
Microexon ID | Pp_13:633025-633039:+ |
Species | Physcomitrium patens | Coordinates | 13:633025..633039 |
Microexon Cluster ID | MEP44 |
Size | 15 |
Phase | 1 |
Pfam Domain Motif | Unknown |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 46,15,47 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | RTTTATGRGCTTTGTGATRTTGACTTGAAAGATTTYAGYMTBCAAGCWTWTGGRCARCAAGGBTGTYTACTTCGRAGCTTRCCTRCAGATRTKGTRTTTGACAAYWCW |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | GAGTTGGTGGACAAG |
Microexon Amino Acid seq | GVGGQG |
Microexon-tag DNA Seq | ATTTACTCCCTGTGTGGAATCGACCTTAAGGATTTCTCTCTTCAAGGAGTTGGTGGACAAGGTTGTTTACTTTCAAGTTTACCTTCCGACATTATGAGCAACGTTACA |
Microexon-tag Amino Acid Seq | IYSLCGIDLKDFSLQGVGGQGCLLSSLPSDIMSNVT |
Microexon-tag spanning region | 632526-633325 |
Microexon-tag prediction score | 0.8414 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | Pp3c13_1140V3.1x |
Reference Transcript ID | Pp3c13_1140V3.1 |
Gene ID | Pp3c13_1140 |
Gene Name | NA |
Transcript ID | Pp3c13_1140V3.1 |
Protein ID | Pp3c13_1140V3.1 |
Gene ID | Pp3c13_1140 |
Gene Name | NA |
Pfam domain motif | Unknown |
Motif E-value | NA |
Motif start | NA |
Motif end | NA |
Protein seq | >Pp3c13_1140V3.1 MKGMKGWRSGLRRPQMSTLLLLYVGLLCQLRGTFSIGHQHGNPIEVGQQLIQDSSPTPSKLPTPSPPTFDTPTPFPTASP PVQASSGIFPFMAPPPLEIPVITNPSTPELSGFCPFDFSTLEGTLIRTAGDCPAPLALYVGSVICCPQLESLFQVSLGQY SLDSGNLGLNVTEAEYCFSDTQNLMASLGANTSLGDLCAAQPANLTSGLCPVTKVSQLEEMINTTKLLDACHSVDPLKEC TEEPTCQSQVMDVATQMAGQLVGDPGQLNGSAVPPGEQQVVVDCKNMVLAWLASKLGPDAANTMLRNLISCRVNKECPLE FRDPMPVAKACGCSSTPSIATCCRAIDGYLLEVQQQMLITNLQALRCVTFLASMLQNMSVFADIYSLCGIDLKDFSLQGV GGQGCLLSSLPSDIMSNVTGIDFTCDLNDNIAAPWVQTLKTDAAYSVCGRPPVALPAIPESSTASWSIDFRRRNFLIMAL CVVFIISKL* |
CDS seq | >Pp3c13_1140V3.1 ATGAAGGGGATGAAGGGTTGGCGATCTGGGCTTAGGAGGCCTCAGATGTCCACTCTGCTTCTTCTCTACGTGGGGCTACT ATGTCAGTTGCGAGGCACATTCTCTATAGGTCATCAACATGGCAACCCAATCGAGGTCGGCCAGCAACTCATTCAGGATT CGTCTCCCACTCCCTCAAAGTTGCCTACTCCCTCTCCTCCAACTTTCGACACTCCAACACCTTTTCCAACTGCGTCACCT CCCGTACAAGCTTCGTCAGGAATTTTTCCATTCATGGCTCCCCCTCCACTGGAGATTCCAGTCATTACCAATCCATCTAC GCCTGAACTATCAGGTTTCTGTCCTTTTGATTTTTCAACGTTAGAAGGGACTCTTATTCGAACTGCTGGAGATTGTCCAG CCCCTCTAGCACTCTACGTTGGAAGTGTCATCTGTTGCCCACAACTTGAGAGCCTTTTTCAAGTCTCTTTGGGTCAATAC AGCCTAGACTCGGGCAATCTTGGGCTGAACGTTACAGAAGCTGAATACTGCTTTTCGGACACCCAAAATCTTATGGCTAG TTTGGGAGCCAACACATCCTTAGGGGATCTTTGTGCTGCTCAACCTGCCAATCTTACCAGTGGTTTATGTCCAGTTACCA AGGTTAGCCAACTGGAAGAGATGATAAATACTACTAAGTTATTGGATGCATGCCATTCGGTGGACCCTTTAAAGGAGTGC ACCGAAGAACCTACTTGTCAATCTCAGGTCATGGACGTAGCCACTCAAATGGCTGGGCAGCTTGTGGGTGATCCAGGTCA ATTGAATGGCAGTGCTGTACCACCAGGTGAACAGCAGGTGGTGGTTGATTGCAAAAACATGGTCCTTGCATGGTTGGCAA GTAAGCTGGGTCCAGATGCAGCGAACACCATGCTGCGTAACCTCATCAGCTGCCGTGTCAACAAAGAGTGTCCTCTGGAA TTTAGAGATCCAATGCCTGTTGCCAAAGCATGTGGCTGCTCAAGTACGCCGTCCATTGCGACTTGTTGCAGAGCCATAGA CGGATACTTGTTGGAGGTTCAGCAGCAGATGTTGATTACTAATTTGCAAGCGCTCCGCTGTGTGACATTCTTGGCTTCCA TGCTTCAAAATATGTCTGTCTTTGCAGATATTTACTCCCTGTGTGGAATCGACCTTAAGGATTTCTCTCTTCAAGGAGTT GGTGGACAAGGTTGTTTACTTTCAAGTTTACCTTCCGACATTATGAGCAACGTTACAGGCATCGACTTTACCTGCGATTT AAACGATAATATAGCGGCTCCCTGGGTTCAAACTCTCAAGACTGATGCAGCATATTCTGTGTGTGGTCGACCTCCGGTTG CTCTGCCAGCCATTCCAGAATCTTCAACGGCCTCTTGGTCAATCGATTTTCGAAGAAGGAACTTTCTCATTATGGCGTTG TGTGTCGTATTTATCATATCCAAGCTGTAG |
Microexon DNA seq | GAGTTGGTGGACAAG |
Microexon Amino Acid seq | GVGGQG |
Microexon-tag DNA Seq | ATTTACTCCCTGTGTGGAATCGACCTTAAGGATTTCTCTCTTCAAGGAGTTGGTGGACAAGGTTGTTTACTTTCAAGTTTACCTTCCGACATTATGAGCAACGTTACA |
Microexon-tag Amino Acid seq | IYSLCGIDLKDFSLQGVGGQGCLLSSLPSDIMSNVT |
Transcript ID | Pp.4494.1 |
Gene ID | Pp.4494 |
Gene Name | NA |
Pfam domain motif | Unknown |
Motif E-value | NA |
Motif start | NA |
Motif end | NA |
Protein seq | >Pp.4494.1 MKGMKGWRSGLRRPQMSTLLLLYVGLLCQLRGTFSIGHQHGNPIEVGQQLIQDSSPTPSKLPTPSPPTFDTPTPFPTASP PVQASSGIFPFMAPPPLEIPVITNPSTPELSGFCPFDFSTLEGTLIRTAGDCPAPLALYVGSVICCPQLESLFQVSLGQY SLDSGNLGLNVTEAEYCFSDTQNLMASLGANTSLGDLCAAQPANLTSGLCPVTKVSQLEEMINTTKLLDACHSVDPLKEC TEEPTCQSQVMDVATQMAGQLVGDPGQLNGSAVPPGEQQVVVDCKNMVLAWLASKLGPDAANTMLRNLISCRVNKECPLE FRDPMPVAKACGCSSTPSIATCCRAIDGYLLEVQQQMLITNLQALRCVTFLASMLQNMSVFADIYSLCGIDLKDFSLQGV GGQGCLLSSLPSDIMSNVTGIDFTCDLNDNIAAPWVQTLKTDAAYSVCGRPPVALPAIPESSTASWSIDFRRRNFLIMAL CVVFIISKL* |
CDS seq | >Pp.4494.1 ATGAAGGGGATGAAGGGTTGGCGATCTGGGCTTAGGAGGCCTCAGATGTCCACTCTGCTTCTTCTCTACGTGGGGCTACT ATGTCAGTTGCGAGGCACATTCTCTATAGGTCATCAACATGGCAACCCAATCGAGGTCGGCCAGCAACTCATTCAGGATT CGTCTCCCACTCCCTCAAAGTTGCCTACTCCCTCTCCTCCAACTTTCGACACTCCAACACCTTTTCCAACTGCGTCACCT CCCGTACAAGCTTCGTCAGGAATTTTTCCATTCATGGCTCCCCCTCCACTGGAGATTCCAGTCATTACCAATCCATCTAC GCCTGAACTATCAGGTTTCTGTCCTTTTGATTTTTCAACGTTAGAAGGGACTCTTATTCGAACTGCTGGAGATTGTCCAG CCCCTCTAGCACTCTACGTTGGAAGTGTCATCTGTTGCCCACAACTTGAGAGCCTTTTTCAAGTCTCTTTGGGTCAATAC AGCCTAGACTCGGGCAATCTTGGGCTGAACGTTACAGAAGCTGAATACTGCTTTTCGGACACCCAAAATCTTATGGCTAG TTTGGGAGCCAACACATCCTTAGGGGATCTTTGTGCTGCTCAACCTGCCAATCTTACCAGTGGTTTATGTCCAGTTACCA AGGTTAGCCAACTGGAAGAGATGATAAATACTACTAAGTTATTGGATGCATGCCATTCGGTGGACCCTTTAAAGGAGTGC ACCGAAGAACCTACTTGTCAATCTCAGGTCATGGACGTAGCCACTCAAATGGCTGGGCAGCTTGTGGGTGATCCAGGTCA ATTGAATGGCAGTGCTGTACCACCAGGTGAACAGCAGGTGGTGGTTGATTGCAAAAACATGGTCCTTGCATGGTTGGCAA GTAAGCTGGGTCCAGATGCAGCGAACACCATGCTGCGTAACCTCATCAGCTGCCGTGTCAACAAAGAGTGTCCTCTGGAA TTTAGAGATCCAATGCCTGTTGCCAAAGCATGTGGCTGCTCAAGTACGCCGTCCATTGCGACTTGTTGCAGAGCCATAGA CGGATACTTGTTGGAGGTTCAGCAGCAGATGTTGATTACTAATTTGCAAGCGCTCCGCTGTGTGACATTCTTGGCTTCCA TGCTTCAAAATATGTCTGTCTTTGCAGATATTTACTCCCTGTGTGGAATCGACCTTAAGGATTTCTCTCTTCAAGGAGTT GGTGGACAAGGTTGTTTACTTTCAAGTTTACCTTCCGACATTATGAGCAACGTTACAGGCATCGACTTTACCTGCGATTT AAACGATAATATAGCGGCTCCCTGGGTTCAAACTCTCAAGACTGATGCAGCATATTCTGTGTGTGGTCGACCTCCGGTTG CTCTGCCAGCCATTCCAGAATCTTCAACGGCCTCTTGGTCAATCGATTTTCGAAGAAGGAACTTTCTCATTATGGCGTTG TGTGTCGTATTTATCATATCCAAGCTGTAG |