
Microexon ID | At_5:23040680-23040694:- |
Species | Arabidopsis thaliana | Coordinates | 5:23040680..23040694 |
Microexon Cluster ID | MEP43 |
Size | 15 |
Phase | 0 |
Pfam Domain Motif | Unknown |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 48,15,45 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | GARCTTCTYAGWCTAGCWTCAACMGAARTACARMGACARTTYTWTCAGGARGCRAGGATTAAGACTGCTGTWTTCATGGGGTGYAACARWGGWGAAATTGARMTYGGT |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | GAAGCCAGGATTCAG |
Microexon Amino Acid seq | EARIQ |
Microexon-tag DNA Seq | GAGAGTCAAAGACTTGCTTTTAACGACACACAACGTCTCTTCTATCAGGAAGCCAGGATTCAGACGGTGATATTCATGGGTTGCCGGAGCGGCGAGATCGAACTCGGA |
Microexon-tag Amino Acid Seq | ESQRLAFNDTQRLFYQEARIQTVIFMGCRSGEIELG |
Microexon-tag spanning region | 23040550-23040859 |
Microexon-tag prediction score | 0.8444 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | AT5G56960.2x |
Reference Transcript ID | AT5G56960.2 |
Gene ID | AT5G56960 |
Gene Name | NA |
Transcript ID | AT5G56960.2 |
Protein ID | AT5G56960.2 |
Gene ID | AT5G56960 |
Gene Name | NA |
Pfam domain motif | Unknown |
Motif E-value | NA |
Motif start | NA |
Motif end | NA |
Protein seq | >AT5G56960.2 MDAFFLTDDPNTRNQLIRSLAQSFGCVYVCLWSYYFPRPSNYLISMDGYYNEASEEPSSSSSSGSLARSLFHEYRQSVIP LQNGHVPSMAFMNNLPYVEIRPQESQRLAFNDTQRLFYQEARIQTVIFMGCRSGEIELGMTYDTTNMKIEASLREWFPED FNRKSSPANSDYLRPPHYPSSSSSSLSPNNISEYSSLLFPLIPKPSTTTEAVNVPVLPPLAPINMIHPQHQEPLFRNRQR EEEAMTQAILAVLTGPSSPPSTSSSPQRKGRATAFKRYYSMISDRGRAPLPSVRKQSMMTRAMSFYNRLNINQRERFTRE NATTHGEGSGGSGGGGRYTSGPSATQLQHMISERKRREKLNESFQALRSLLPPGTKKDKASVLSIAREQLSSLQGEISKL LERNREVEAKLAGEREIENDLRPEERFNVRIRHIPESTSRERTLDLRVVLRGDIIRVDDLMIRLLEFLKQINNVSLVSIE ARTLARAEGDTSIVLVISLRLKIEGEWDESAFQEAVRRVVADLAH* |
CDS seq | >AT5G56960.2 ATGGATGCATTCTTCTTAACGGATGATCCCAATACCCGGAACCAGTTAATCCGGTCGCTAGCTCAATCTTTTGGATGTGT TTACGTTTGTCTTTGGTCTTACTATTTTCCTCGACCTTCTAACTATTTAATATCAATGGATGGATATTACAATGAAGCTT CTGAAGAACCTTCTTCGTCTTCTTCTTCTGGAAGTTTAGCTAGGAGCTTGTTCCATGAGTATCGCCAATCCGTTATCCCG CTCCAAAATGGGCATGTGCCAAGCATGGCGTTCATGAACAATCTTCCATACGTAGAAATTCGACCACAAGAGAGTCAAAG ACTTGCTTTTAACGACACACAACGTCTCTTCTATCAGGAAGCCAGGATTCAGACGGTGATATTCATGGGTTGCCGGAGCG GCGAGATCGAACTCGGAATGACGTATGATACTACAAATATGAAAATTGAAGCAAGTCTTCGAGAATGGTTCCCTGAAGAT TTCAATAGAAAGTCTTCTCCGGCAAACTCCGATTATCTCCGGCCACCTCATTATCCCTCTTCATCGTCTTCTTCTCTTAG TCCCAACAACATCTCCGAATATTCCTCTCTTTTGTTCCCACTCATCCCTAAACCTTCAACGACGACTGAGGCCGTTAACG TTCCGGTACTTCCACCGCTAGCTCCGATCAATATGATCCATCCACAGCATCAAGAGCCTTTATTCCGTAACCGTCAACGT GAGGAAGAAGCAATGACGCAAGCAATCTTAGCGGTTTTAACGGGGCCATCAAGTCCTCCGTCAACTTCTTCCTCGCCGCA GCGTAAAGGAAGAGCCACCGCTTTTAAGAGATATTACTCCATGATTAGTGACCGCGGTAGAGCCCCGCTTCCGAGTGTTC GGAAGCAAAGTATGATGACAAGAGCGATGTCCTTCTACAATAGGCTTAACATTAACCAGAGAGAGCGTTTTACTAGGGAA AACGCTACTACACACGGCGAGGGAAGCGGTGGAAGTGGAGGGGGTGGACGTTATACTAGCGGGCCAAGCGCAACGCAACT GCAACATATGATATCGGAGAGGAAACGGCGAGAGAAGCTTAATGAGAGCTTTCAAGCATTGAGATCTCTCCTTCCTCCCG GAACTAAGAAAGATAAAGCATCGGTCCTCTCCATTGCAAGAGAGCAACTATCTTCTTTGCAAGGTGAGATTTCGAAACTA CTAGAGAGAAATCGGGAGGTAGAGGCAAAGCTAGCAGGAGAAAGAGAGATTGAAAATGATTTACGACCCGAAGAGAGGTT TAACGTTCGTATAAGACATATACCTGAATCAACATCTAGAGAGAGGACTTTGGATCTACGAGTTGTTCTAAGGGGAGACA TCATTAGGGTTGATGATTTGATGATAAGACTTCTCGAATTCTTGAAGCAAATCAACAATGTGAGCTTAGTGTCAATCGAA GCTCGAACTCTAGCTAGAGCAGAGGGGGATACTTCAATTGTTCTTGTGATCAGCTTAAGGCTCAAGATTGAGGGTGAATG GGACGAATCAGCCTTCCAAGAAGCAGTCAGAAGGGTTGTTGCTGACTTGGCTCACTGA |
At_5:23040680-23040694:- does not have available information here.