Microexon ID At_5:23040680-23040694:-
Species Arabidopsis thaliana
Coordinates 5:23040680..23040694
Microexon Cluster ID MEP43
Size 15
Phase 0
Pfam Domain Motif Unknown
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) 48,15,45
Microexon location in the Microexon-tag 2
Microexon-tag DNA Seq GARCTTCTYAGWCTAGCWTCAACMGAARTACARMGACARTTYTWTCAGGARGCRAGGATTAAGACTGCTGTWTTCATGGGGTGYAACARWGGWGAAATTGARMTYGGT
Logo of Microexon-tag DNA Seq NT60 Logo
Alignment of exons MSA
Microexon DNA seq GAAGCCAGGATTCAG
Microexon Amino Acid seq EARIQ
Microexon-tag DNA Seq GAGAGTCAAAGACTTGCTTTTAACGACACACAACGTCTCTTCTATCAGGAAGCCAGGATTCAGACGGTGATATTCATGGGTTGCCGGAGCGGCGAGATCGAACTCGGA
Microexon-tag Amino Acid Seq ESQRLAFNDTQRLFYQEARIQTVIFMGCRSGEIELG
Microexon-tag spanning region23040550-23040859
Microexon-tag prediction score0.8444
Overlapped with the annotated transcript (%) 100
New Transcript ID AT5G56960.2x
Reference Transcript ID AT5G56960.2
Gene ID AT5G56960
Gene Name NA
Transcript ID AT5G56960.2
Protein ID AT5G56960.2
Gene ID AT5G56960
Gene Name NA
Pfam domain motif Unknown
Motif E-value NA
Motif start NA
Motif end NA
Protein seq >AT5G56960.2
MDAFFLTDDPNTRNQLIRSLAQSFGCVYVCLWSYYFPRPSNYLISMDGYYNEASEEPSSSSSSGSLARSLFHEYRQSVIP
LQNGHVPSMAFMNNLPYVEIRPQESQRLAFNDTQRLFYQEARIQTVIFMGCRSGEIELGMTYDTTNMKIEASLREWFPED
FNRKSSPANSDYLRPPHYPSSSSSSLSPNNISEYSSLLFPLIPKPSTTTEAVNVPVLPPLAPINMIHPQHQEPLFRNRQR
EEEAMTQAILAVLTGPSSPPSTSSSPQRKGRATAFKRYYSMISDRGRAPLPSVRKQSMMTRAMSFYNRLNINQRERFTRE
NATTHGEGSGGSGGGGRYTSGPSATQLQHMISERKRREKLNESFQALRSLLPPGTKKDKASVLSIAREQLSSLQGEISKL
LERNREVEAKLAGEREIENDLRPEERFNVRIRHIPESTSRERTLDLRVVLRGDIIRVDDLMIRLLEFLKQINNVSLVSIE
ARTLARAEGDTSIVLVISLRLKIEGEWDESAFQEAVRRVVADLAH*
CDS seq >AT5G56960.2
ATGGATGCATTCTTCTTAACGGATGATCCCAATACCCGGAACCAGTTAATCCGGTCGCTAGCTCAATCTTTTGGATGTGT
TTACGTTTGTCTTTGGTCTTACTATTTTCCTCGACCTTCTAACTATTTAATATCAATGGATGGATATTACAATGAAGCTT
CTGAAGAACCTTCTTCGTCTTCTTCTTCTGGAAGTTTAGCTAGGAGCTTGTTCCATGAGTATCGCCAATCCGTTATCCCG
CTCCAAAATGGGCATGTGCCAAGCATGGCGTTCATGAACAATCTTCCATACGTAGAAATTCGACCACAAGAGAGTCAAAG
ACTTGCTTTTAACGACACACAACGTCTCTTCTATCAGGAAGCCAGGATTCAGACGGTGATATTCATGGGTTGCCGGAGCG
GCGAGATCGAACTCGGAATGACGTATGATACTACAAATATGAAAATTGAAGCAAGTCTTCGAGAATGGTTCCCTGAAGAT
TTCAATAGAAAGTCTTCTCCGGCAAACTCCGATTATCTCCGGCCACCTCATTATCCCTCTTCATCGTCTTCTTCTCTTAG
TCCCAACAACATCTCCGAATATTCCTCTCTTTTGTTCCCACTCATCCCTAAACCTTCAACGACGACTGAGGCCGTTAACG
TTCCGGTACTTCCACCGCTAGCTCCGATCAATATGATCCATCCACAGCATCAAGAGCCTTTATTCCGTAACCGTCAACGT
GAGGAAGAAGCAATGACGCAAGCAATCTTAGCGGTTTTAACGGGGCCATCAAGTCCTCCGTCAACTTCTTCCTCGCCGCA
GCGTAAAGGAAGAGCCACCGCTTTTAAGAGATATTACTCCATGATTAGTGACCGCGGTAGAGCCCCGCTTCCGAGTGTTC
GGAAGCAAAGTATGATGACAAGAGCGATGTCCTTCTACAATAGGCTTAACATTAACCAGAGAGAGCGTTTTACTAGGGAA
AACGCTACTACACACGGCGAGGGAAGCGGTGGAAGTGGAGGGGGTGGACGTTATACTAGCGGGCCAAGCGCAACGCAACT
GCAACATATGATATCGGAGAGGAAACGGCGAGAGAAGCTTAATGAGAGCTTTCAAGCATTGAGATCTCTCCTTCCTCCCG
GAACTAAGAAAGATAAAGCATCGGTCCTCTCCATTGCAAGAGAGCAACTATCTTCTTTGCAAGGTGAGATTTCGAAACTA
CTAGAGAGAAATCGGGAGGTAGAGGCAAAGCTAGCAGGAGAAAGAGAGATTGAAAATGATTTACGACCCGAAGAGAGGTT
TAACGTTCGTATAAGACATATACCTGAATCAACATCTAGAGAGAGGACTTTGGATCTACGAGTTGTTCTAAGGGGAGACA
TCATTAGGGTTGATGATTTGATGATAAGACTTCTCGAATTCTTGAAGCAAATCAACAATGTGAGCTTAGTGTCAATCGAA
GCTCGAACTCTAGCTAGAGCAGAGGGGGATACTTCAATTGTTCTTGTGATCAGCTTAAGGCTCAAGATTGAGGGTGAATG
GGACGAATCAGCCTTCCAAGAAGCAGTCAGAAGGGTTGTTGCTGACTTGGCTCACTGA
At_5:23040680-23040694:- does not have available information here.