
Microexon ID | Zm_1:230670666-230670680:- |
Species | Zea mays | Coordinates | 1:230670666..230670680 |
Microexon Cluster ID | MEP41 |
Size | 15 |
Phase | 0 |
Pfam Domain Motif | DUF974 |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 48,15,45 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | CARTTYTTCAAGTTYATTGTTKCWAAYCCACTTTCWGTTAGRACAAAGGTYCGYRYTRTCAAGGAAACTACMTWTYTRGARGCTTGYATWGARAAYCATACAAAATCA |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | GTTCGCACCATCAAG |
Microexon Amino Acid seq | VRTIK |
Microexon-tag DNA Seq | CAGTTCTTTAAGTTCTCTGTTTCAAACCCATTATCTGTTAGGACAAAGGTTCGCACCATCAAGGACATCACATATCTGGAAGCCTGCATAGAGAACCATACAAAATCT |
Microexon-tag Amino Acid Seq | QFFKFSVSNPLSVRTKVRTIKDITYLEACIENHTKS |
Microexon-tag spanning region | 230669901-230670851 |
Microexon-tag prediction score | 0.9641 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | Zm00001d032566_T001x |
Reference Transcript ID | Zm00001d032566_T001 |
Gene ID | Zm00001d032566 |
Gene Name | NA |
Transcript ID | Zm00001d032566_T001 |
Protein ID | Zm00001d032566_P001 |
Gene ID | Zm00001d032566 |
Gene Name | NA |
Pfam domain motif | DUF974 |
Motif E-value | 2e-50 |
Motif start | 111 |
Motif end | 272 |
Protein seq | >Zm00001d032566_P001 MASPYAGGVQPPSPAGAVQQQQQNHSLAFRVMRLSRPSLQPDLAALLRFDPRDVFLPEDALTGSDPSAAAKFLHGLLHPA DSATAVPGDFTFRDRFLLRDPADALALPGLLVLPQSFGAIYLGETFCSYISINNSSSFEARDVVIKAEIQTERQRILLLD TSKSPVESIRSGGRYDFIVEHDVKELGAHTLVCTALYNDGDGERKYLPQFFKFSVSNPLSVRTKVRTIKDITYLEACIEN HTKSNLYMDQVDFEPAQQWSATRLEADEHPSTVKSAIGYCDIEPKPTASKDVNLRAVKVPPIIYVERAFMVNLCLTNQTD KTVGPFEVFLAPSMSGEDRAVLVNGPQKLILPLVEAFESIKFDLSMVTTQLGVQKISGITMYAVQEKKYYEPLPDIEIFV DAE* |
CDS seq | >Zm00001d032566_T001 ATGGCTTCGCCTTACGCCGGCGGCGTGCAGCCTCCCTCTCCCGCTGGGGCGGTGCAGCAGCAGCAGCAGAACCACTCTCT GGCGTTCCGCGTGATGCGGCTGTCTCGCCCCTCACTCCAGCCAGACCTGGCCGCTCTGCTCCGCTTCGACCCACGCGACG TCTTCCTCCCTGAGGACGCGCTCACCGGCTCCGACCCGTCCGCTGCCGCCAAATTCCTCCACGGCCTCCTCCACCCTGCG GACTCCGCCACTGCCGTCCCTGGAGACTTCACCTTCCGCGACCGCTTCCTCCTCCGCGACCCAGCCGACGCGCTCGCTCT GCCGGGCCTCCTCGTCCTCCCCCAGTCGTTCGGTGCGATCTATCTGGGCGAGACCTTCTGCAGTTACATCAGCATCAACA ATAGCTCCAGCTTTGAGGCCAGGGACGTCGTCATCAAGGCAGAAATACAAACAGAGAGACAGAGAATACTTCTTCTGGAT ACATCAAAATCCCCTGTTGAGTCAATTAGATCTGGGGGTAGATATGATTTCATTGTGGAACATGATGTCAAAGAACTAGG AGCACATACGCTTGTATGTACTGCTTTATATAATGATGGTGATGGAGAGCGTAAATATCTTCCCCAGTTCTTTAAGTTCT CTGTTTCAAACCCATTATCTGTTAGGACAAAGGTTCGCACCATCAAGGACATCACATATCTGGAAGCCTGCATAGAGAAC CATACAAAATCTAATCTTTACATGGATCAAGTTGATTTTGAGCCTGCCCAACAATGGAGTGCTACAAGACTGGAAGCTGA TGAACATCCCTCAACAGTGAAGTCTGCAATAGGTTACTGTGATATTGAGCCTAAGCCGACTGCAAGCAAAGATGTTAATC TCCGTGCTGTGAAAGTTCCACCTATTATATATGTGGAAAGAGCATTTATGGTCAATCTGTGCCTTACAAATCAAACGGAC AAAACTGTGGGCCCTTTTGAAGTATTTCTGGCTCCAAGCATGTCGGGTGAAGACAGAGCTGTTCTAGTCAATGGGCCACA GAAGTTGATTTTACCTTTGGTGGAGGCTTTTGAGTCTATCAAATTTGATCTGAGCATGGTGACCACCCAGCTAGGAGTGC AAAAGATTTCCGGAATTACAATGTACGCCGTGCAGGAAAAGAAGTACTATGAACCTTTGCCCGACATAGAGATTTTTGTT GATGCAGAATAG |
Microexon DNA seq | GTTCGCACCATCAAG |
Microexon Amino Acid seq | VRTIK |
Microexon-tag DNA Seq | CAGTTCTTTAAGTTCTCTGTTTCAAACCCATTATCTGTTAGGACAAAGGTTCGCACCATCAAGGACATCACATATCTGGAAGCCTGCATAGAGAACCATACAAAATCT |
Microexon-tag Amino Acid seq | QFFKFSVSNPLSVRTKVRTIKDITYLEACIENHTKS |
Transcript ID | Zm00001d032566_T002 |
Gene ID | Zm.3986 |
Gene Name | NA |
Pfam domain motif | DUF974 |
Motif E-value | 2.2e-64 |
Motif start | 111 |
Motif end | 340 |
Protein seq | >Zm00001d032566_T002 MASPYAGGVQPPSPAGAVQQQQQNHSLAFRVMRLSRPSLQPDLAALLRFDPRDVFLPEDALTGSDPSAAAKFLHGLLHPA DSATAVPGDFTFRDRFLLRDPADALALPGLLVLPQSFGAIYLGETFCSYISINNSSSFEARDVVIKAEIQTERQRILLLD TSKSPVESIRSGGRYDFIVEHDVKELGAHTLVCTALYNDGDGERKYLPQFFKFSVSNPLSVRTKVRTIKDITYLEACIEN HTKSNLYMDQVDFEPAQQWSATRLEADEHPSTVKSAIGDLCKQPILIRAGGGIYNYLYQLRSSSDEAGQTKSEGSSILGK FQITWRTNLGEPGRLQTQNIHSTPTASKDVNLRAVKVPPIIYVERAFMVNLCLTNQTDKTVGPFEVFLAPSMSGEDRAVL VNGPQKLILPLVEAFESIKFDLSMVTTQLGVQKISGITMYAVQEKKYYEPLPDIEIFVDAE* |
CDS seq | >Zm00001d032566_T002 ATGGCTTCGCCTTACGCCGGCGGCGTGCAGCCTCCCTCTCCCGCTGGGGCGGTGCAGCAGCAGCAGCAGAACCACTCTCT GGCGTTCCGCGTGATGCGGCTGTCTCGCCCCTCACTCCAGCCAGACCTGGCCGCTCTGCTCCGCTTCGACCCACGCGACG TCTTCCTCCCTGAGGACGCGCTCACCGGCTCCGACCCGTCCGCTGCCGCCAAATTCCTCCACGGCCTCCTCCACCCTGCG GACTCCGCCACTGCCGTCCCTGGAGACTTCACCTTCCGCGACCGCTTCCTCCTCCGCGACCCAGCCGACGCGCTCGCTCT GCCGGGCCTCCTCGTCCTCCCCCAGTCGTTCGGTGCGATCTATCTGGGCGAGACCTTCTGCAGTTACATCAGCATCAACA ATAGCTCCAGCTTTGAGGCCAGGGACGTCGTCATCAAGGCAGAAATACAAACAGAGAGACAGAGAATACTTCTTCTGGAT ACATCAAAATCCCCTGTTGAGTCAATTAGATCTGGGGGTAGATATGATTTCATTGTGGAACATGATGTCAAAGAACTAGG AGCACATACGCTTGTATGTACTGCTTTATATAATGATGGTGATGGAGAGCGTAAATATCTTCCCCAGTTCTTTAAGTTCT CTGTTTCAAACCCATTATCTGTTAGGACAAAGGTTCGCACCATCAAGGACATCACATATCTGGAAGCCTGCATAGAGAAC CATACAAAATCTAATCTTTACATGGATCAAGTTGATTTTGAGCCTGCCCAACAATGGAGTGCTACAAGACTGGAAGCTGA TGAACATCCCTCAACAGTGAAGTCTGCAATAGGGGATCTCTGTAAACAACCGATCCTCATCAGAGCTGGGGGAGGAATAT ACAATTACCTTTATCAGCTAAGATCATCATCTGATGAAGCTGGTCAAACAAAGTCTGAGGGAAGCAGTATACTTGGTAAA TTTCAGATAACATGGCGTACGAACCTGGGTGAACCAGGCCGTTTGCAGACTCAGAACATTCATAGCACTCCGACTGCAAG CAAAGATGTTAATCTCCGTGCTGTGAAAGTTCCACCTATTATATATGTGGAAAGAGCATTTATGGTCAATCTGTGCCTTA CAAATCAAACGGACAAAACTGTGGGCCCTTTTGAAGTATTTCTGGCTCCAAGCATGTCGGGTGAAGACAGAGCTGTTCTA GTCAATGGGCCACAGAAGTTGATTTTACCTTTGGTGGAGGCTTTTGAGTCTATCAAATTTGATCTGAGCATGGTGACCAC CCAGCTAGGAGTGCAAAAGATTTCCGGAATTACAATGTACGCCGTGCAGGAAAAGAAGTACTATGAACCTTTGCCCGACA TAGAGATTTTTGTTGATGCAGAATAG |