Microexon ID Pt_5:6212656-6212669:-
Species Populus   Trichocarpa
Coordinates 5:6212656..6212669
Microexon Cluster ID MEP38
Size 14
Phase 1
Pfam Domain Motif Myosin_head
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) 46,14,48
Microexon location in the Microexon-tag 2
Microexon-tag DNA Seq CAYTTYARTRMAACTGGRAARATATSTGGTGCYAADATTCAAACWTTTYTRCTTGARAAGTCWAGAGTWGTYCARYKTGCWGAWGGWGARAGRTCATAYCATATWTTT
Logo of Microexon-tag DNA Seq NT60 Logo
Alignment of exons MSA
Microexon DNA seq TTTTACTTGAAAAG
Microexon Amino Acid seq FLLEK
Microexon-tag DNA Seq CACTTTAGTGAAACTGGAAAAATATCAGGTGCCAAAATTCAAACATTTTTACTTGAAAAGTCCAGAGTCGTCCAATGCATGGAGGGTGAGAGGTCATATCATATATTT
Microexon-tag Amino Acid Seq HFSETGKISGAKIQTFLLEKSRVVQCMEGERSYHIF
Microexon-tag spanning region6212529-6212839
Microexon-tag prediction score0.9627
Overlapped with the annotated transcript (%) 100
New Transcript ID Potri.005G089200.2.v4.1x
Reference Transcript ID Potri.005G089200.2.v4.1
Gene ID Potri.005G089200.v4.1
Gene Name NA
Transcript ID Potri.005G089200.2.v4.1
Protein ID
Gene ID Potri.005G089200.v4.1
Gene Name
Pfam domain motif Myosin_head
Motif E-value 2.10E-245
Motif start 177
Motif end 836
Protein seq >Potri.005G089200.2.v4.1
MLQKKSQVLPSFQSIKSLPVDFRFVGSPTSEQSENANLVNSNTACLSVPEKNDLENGLVEGAEDSVGNDVNEDSPYSQAA
ILVEQRPSVGDEDLDTVPTPLPLVSTFHRERRWADTSSYAAKKKLQSWFQLSNGDWELGKILSTSGTESVISPPDGKVLK
VKTESLVPANPDILDGVDDLMQLSYLNEPSVLYNLQYRYNRDMIYTKAGPVLVAINPFKEVPLYGNNYIEAYKNKSMESP
HVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTLRNDNSSRF
GKLIEIHFSETGKISGAKIQTFLLEKSRVVQCMEGERSYHIFYQLCAGASPKLREKISLKIASEYKYLRQSNCYTITGVD
DAERFRGVMEALDIVHVSKEDQESVFAMLAAVLWLGNVSFSIVDNENHVEPLADEGLTTVAKLIGCNVGELKLALSTRKM
RVGNDTIVQKLSLSQAIDTRDALAKSIYSCLFDWLVEQVNKSLAVGKRRTGRSISILDIYGFESFERNSFEQFCINYANE
RLQQHFNRHLFKLEQEEYIQDGIDWTKVDFDDNQDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNSCFR
GERGKAFSVSHYAGEVTYDTTGFLEKNRDLLHLDSIQLLSSCSCHLPQIFASNMLTQSEKPVVGPLYKAGGADSQKLSVA
TKFKGQLFQLMQRLENTTPHFIRCIKPNNSQSPGSYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLE
SVAYSQDPLSISVAILHQFDILPEMYQVGYTKLFFRTGQIGVLEDTRNHTLHGILRVQSCFRGHQARAYLRELKRGICVL
QSFVRGEKIRKEYAVSQQRHRAAVVIQRHIKSTICGKKYKDMHQASIMIQSVIRGWLVRRFSGDVGLLKSGATKGNESDE
VLVKASFLAELQRRVLKAEAALREKEEENDVLHQRLQQYENRWSEYELKMKSMEEVWQKQMRSLQSSLSIAKKSLAIDDS
ERNSDASVNASDEREFSWDTGSNHRGQESNSARPMSAGLSVISRMAEEFEQRSQVFGDDAKFLVEVKSGQVEASLNPDRE
LRRLKQMFEAWKKDYGSRLRETKVILNKLGTEEGALDRVKRKWWGRRNSTRYT*
CDS seq >Potri.005G089200.2.v4.1
ATGTTGCAGAAAAAATCTCAGGTCTTGCCTTCTTTCCAGTCGATCAAATCGTTGCCAGTTGATTTTAGGTTTGTTGGTTC
GCCGACATCAGAACAATCAGAAAACGCAAATTTGGTAAATAGCAATACAGCCTGTTTGAGTGTTCCTGAAAAAAATGATC
TAGAGAATGGTCTTGTCGAGGGAGCTGAGGATAGTGTTGGCAATGATGTCAATGAGGATTCACCTTACAGTCAAGCTGCC
ATCTTGGTTGAACAAAGACCTTCTGTGGGTGATGAAGATTTGGATACTGTGCCCACACCTTTGCCCTTGGTATCAACATT
TCACAGGGAGCGCAGGTGGGCTGACACCAGTTCCTATGCTGCAAAAAAGAAACTTCAATCTTGGTTTCAACTTTCAAATG
GGGATTGGGAGCTGGGGAAGATTTTATCAACTTCAGGGACCGAGTCTGTCATTTCCCCTCCAGATGGAAAAGTTTTAAAG
GTGAAAACTGAGAGTCTTGTTCCAGCAAATCCTGATATCCTTGATGGTGTAGATGATCTCATGCAACTTAGTTACTTAAA
TGAGCCATCAGTGCTGTACAATCTTCAGTATAGATACAACCGTGATATGATTTATACAAAAGCAGGGCCAGTTTTGGTTG
CCATCAATCCTTTCAAGGAAGTTCCTTTATATGGAAATAATTACATTGAAGCATATAAGAATAAATCTATGGAGAGCCCA
CATGTGTATGCCATTACAGACACGGCCATCCGGGAAATGATACGAGATGAAGTAAATCAATCTATCATTATAAGTGGTGA
AAGTGGAGCAGGAAAAACAGAGACAGCGAAGATAGCTATGCAATATCTGGCTGCTCTTGGTGGTGGTAGTGGGATAGAAT
ATGAAATATTGAAAACGAATCCTATTCTAGAAGCTTTTGGTAATGCAAAGACATTGAGGAATGACAACTCAAGTCGCTTT
GGAAAGTTGATTGAAATCCACTTTAGTGAAACTGGAAAAATATCAGGTGCCAAAATTCAAACATTTTTACTTGAAAAGTC
CAGAGTCGTCCAATGCATGGAGGGTGAGAGGTCATATCATATATTTTATCAGCTTTGTGCCGGGGCTTCACCTAAACTTA
GAGAGAAAATAAGCTTGAAGATTGCAAGTGAATATAAATATTTGAGACAGAGCAATTGCTACACAATTACTGGTGTCGAT
GACGCTGAACGCTTCCGTGGTGTTATGGAAGCTCTGGATATTGTTCATGTCAGTAAGGAAGACCAAGAGAGTGTATTTGC
AATGCTTGCTGCAGTACTGTGGTTAGGAAATGTCTCGTTTTCCATTGTTGATAATGAAAATCATGTTGAACCTTTGGCAG
ATGAAGGTCTAACCACTGTTGCAAAATTGATTGGCTGTAATGTTGGGGAGCTTAAGCTGGCTTTATCTACTCGCAAAATG
AGAGTCGGAAATGATACAATTGTCCAAAAGCTATCCTTATCACAGGCAATAGATACAAGAGATGCTCTGGCCAAGTCAAT
TTATTCTTGCTTGTTTGATTGGCTTGTTGAACAAGTCAACAAATCACTTGCAGTTGGTAAAAGGAGAACTGGCAGATCCA
TCAGCATTCTTGACATTTATGGATTTGAATCATTTGAAAGGAATAGTTTTGAGCAATTCTGCATAAATTATGCAAATGAG
AGATTGCAGCAACACTTCAATCGTCATTTATTCAAGTTGGAGCAGGAGGAATACATACAAGATGGCATTGACTGGACCAA
GGTTGATTTTGATGATAACCAGGACTGTCTCAATCTTTTTGAAAAGAAACCTTTGGGGTTATTATCTTTGCTGGATGAGG
AGTCCACCTTTCCAAATGGCACAGATTTGACATTTGCCAACAAGCTTAAACAGCATTTAAACTCTAATTCTTGTTTCAGA
GGAGAGCGAGGCAAAGCCTTCAGTGTCAGCCATTATGCGGGCGAGGTGACTTATGATACAACTGGATTTCTGGAGAAGAA
TAGAGACTTATTACACTTGGACTCTATCCAGCTTCTCTCTTCATGTTCATGCCATCTCCCTCAGATATTTGCTTCCAATA
TGCTTACACAATCTGAGAAACCTGTAGTCGGTCCTTTATATAAAGCAGGTGGAGCAGATTCACAAAAGCTAAGTGTTGCA
ACAAAATTTAAGGGCCAACTGTTCCAATTGATGCAACGTCTAGAGAACACAACACCACATTTCATACGTTGTATAAAGCC
TAACAACTCGCAATCTCCTGGATCGTATGAGCAAGGACTTGTATTGCAGCAACTGAGATGTTGTGGAGTTCTTGAAGTAG
TTCGTATATCAAGGTCTGGATTTCCTACCAGAATGTCACACCAGAAGTTTGCCAGAAGATATGGTTTTCTTCTGCTGGAA
AGTGTTGCTTATTCTCAAGATCCACTGAGTATTTCGGTTGCAATTCTTCATCAGTTCGATATCTTGCCAGAGATGTATCA
AGTTGGCTACACAAAATTATTTTTCCGAACAGGACAGATTGGTGTGCTTGAGGATACAAGAAACCACACGCTACATGGTA
TTTTACGTGTTCAAAGCTGTTTCAGGGGGCACCAAGCTCGTGCTTACCTCAGGGAGCTCAAAAGAGGAATTTGTGTTCTA
CAGTCATTTGTTCGTGGAGAGAAAATCAGAAAGGAATATGCAGTCTCACAACAAAGACATAGAGCAGCCGTTGTTATACA
AAGACATATCAAAAGCACAATCTGCGGGAAAAAATACAAAGACATGCATCAAGCATCAATCATGATACAATCAGTTATTC
GTGGATGGTTGGTGAGAAGATTTTCGGGTGATGTAGGATTATTGAAATCTGGTGCAACCAAGGGCAATGAGTCAGATGAG
GTGCTCGTGAAGGCATCATTTCTTGCTGAATTACAGCGACGTGTTCTCAAAGCTGAAGCTGCTCTTAGAGAGAAAGAGGA
GGAGAATGACGTCCTTCACCAACGGCTCCAACAGTATGAGAACCGTTGGTCAGAATATGAGTTGAAAATGAAGTCCATGG
AAGAAGTGTGGCAGAAACAGATGAGATCCCTACAATCCAGTCTCTCCATTGCAAAGAAGAGCCTAGCCATTGATGATTCT
GAGAGAAATTCTGATGCATCTGTCAATGCAAGTGATGAGAGAGAGTTTAGCTGGGATACAGGAAGCAACCATAGGGGTCA
AGAAAGTAACAGTGCTAGACCGATGAGTGCAGGCTTGAGTGTTATAAGCCGTATGGCTGAAGAATTTGAGCAGAGGAGTC
AAGTGTTTGGTGATGATGCCAAGTTCTTGGTAGAGGTAAAATCAGGTCAGGTTGAAGCAAGTTTGAACCCTGACCGAGAG
CTCAGAAGGTTGAAGCAGATGTTTGAAGCTTGGAAGAAGGATTATGGATCGAGACTACGGGAAACAAAGGTGATTTTGAA
TAAGCTCGGAACTGAAGAAGGTGCCCTTGACAGGGTGAAAAGGAAGTGGTGGGGAAGGAGGAACAGCACGAGATATACTT
AG
Pt_5:6212656-6212669:- does not have available information here.