Microexon ID Bn_scaffoldA06:2048649-2048662:-
Species Brassica   Napus
Coordinates scaffoldA06:2048649..2048662
Microexon Cluster ID MEP38
Size 14
Phase 1
Pfam Domain Motif Myosin_head
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) 46,14,48
Microexon location in the Microexon-tag 2
Microexon-tag DNA Seq CAYTTYARTRMAACTGGRAARATATSTGGTGCYAADATTCAAACWTTTYTRCTTGARAAGTCWAGAGTWGTYCARYKTGCWGAWGGWGARAGRTCATAYCATATWTTT
Logo of Microexon-tag DNA Seq NT60 Logo
Alignment of exons MSA
Microexon DNA seq TTTTGCTAGAAAAG
Microexon Amino Acid seq FLLEK
Microexon-tag DNA Seq CATTTTAGTGAAACAGGAAAGATTTCTGGTGCTAAAGTCCAAACATTTTTGCTAGAAAAGTCTAGAGTGGTTCAATGTGCGGAAGGAGAAAGGTCATATCATATATTT
Microexon-tag Amino Acid Seq HFSETGKISGAKVQTFLLEKSRVVQCAEGERSYHIF
Microexon-tag spanning region2048512-2048809
Microexon-tag prediction score0.9737
Overlapped with the annotated transcript (%) 100
New Transcript ID BnaA06T0030900ZSx
Reference Transcript ID BnaA06T0030900ZS
Gene ID BnaA06G0030900ZS
Gene Name NA
Transcript ID BnaA06T0030900ZS
Protein ID
Gene ID BnaA06G0030900ZS
Gene Name
Pfam domain motif Myosin_head
Motif E-value 1.70E-246
Motif start 159
Motif end 817
Protein seq >BnaA06T0030900ZS
MSQKVKPSVQSLKSMPADYRFLDSPPLEDSSGSSVSVTIPPNGHLKNGFKGTGDSVGGVDNGNEDSPYSVSNGEVSSLVD
GDLIVPLPQSTDRRWSDTSVYARKKVLQFWVQLPSGNWELGKVLSTSGEESVVKLPEGNVLKVISETLVPANPDILDGVD
DLMQLSYLNEPAVLYNLEYRYNQDMIYTKAGPVLVAVNPFKEVPLYGNSNIEAYRKRSNESPHVYAIADTAIREMIRDEV
NQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSETGKISGAK
VQTFLLEKSRVVQCAEGERSYHIFYQLCAGASPTLREKLNLTSAEEYKYLQQSNCYSINGVDDAERFQAVTEALDIVHVS
KEDQESVFAMLAAVLWLGNVSFTAIDNENHVEPEEDESLSTVAKLIGCNINELKLALSNRNMKVRNDTIIQKLTLSQAID
ARDALAKSIYACLFDWLVEQINKSLAVGKRRTGRSISILDIYGFESFDKNSFEQFCINYANERLQQHFNRHLFKLEQEEY
IQDGIDWTRVDFEDNQNCLSLFEKKPLGLLSLLDEESTFPNGTDLTLANKLKEHLSANSCFRGDRGKAFTVSHYAGEVTY
ETTGFLEKNRDLLHSDSIKLLSSCSCHLPQAFASSMLIHSEKPVVGPLYKAGGADSQRLSVATKFKDQLFQLMQRLGNTT
PHFIRCIKPNNVQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESIAAKDPLSVSVAILHQF
NILPEMYQVGYTKLFFRTGQIGVLEDTRNRTLHGILRLQSCFRGHQARSRLREHKRRVTVLQSFVRGEKVRKEYTELLRR
HRASAAIQSHVKRRIAKRQYKATVDASVVIQSAIRGELVRRCAGDIGWLKSGGTKRNESDEVLVKASVLSELQRRVLKSE
AALREKEEENDILRQRLQQYDNRWSEYETKMKSMEEIWQKQMRSLQSSLSIAKKSLEVEDSARNSDASVNASDATELSGS
GGDFRTHGRTRSVGVGLSVISRLAEEFGQRAQVFGDDTKFLMEVKSGQVEANLDPERELRRLKQMFDTWKKDYGGRLRET
KLILGKLGSEGGGGSAERVKMKWWGRLKSTRF*
CDS seq >BnaA06T0030900ZS
ATGTCCCAGAAGGTTAAGCCATCTGTTCAGTCACTTAAATCGATGCCGGCGGATTATAGATTCCTTGATTCACCACCCCT
TGAGGACTCCTCTGGATCAAGTGTTTCTGTGACCATTCCACCAAATGGTCACTTGAAGAATGGGTTCAAGGGAACTGGAG
ATTCTGTTGGGGGAGTGGATAATGGTAATGAGGATTCACCGTACAGCGTTTCAAATGGGGAGGTGTCTTCACTTGTTGAT
GGAGATCTTATCGTGCCCTTGCCTCAGAGTACGGACCGCAGGTGGAGCGACACAAGCGTATATGCTCGGAAGAAGGTATT
GCAATTTTGGGTCCAACTTCCAAGTGGTAACTGGGAGCTGGGGAAGGTGTTGTCAACTTCAGGAGAAGAGTCTGTTGTTA
AACTACCTGAGGGAAATGTGTTAAAAGTCATATCAGAGACACTAGTACCTGCAAATCCTGATATACTTGATGGAGTAGAT
GATCTCATGCAACTAAGTTACTTAAATGAACCAGCAGTGTTGTACAACCTTGAGTATAGGTACAACCAAGACATGATCTA
TACCAAAGCAGGCCCGGTTCTAGTGGCTGTGAATCCATTCAAAGAGGTTCCTTTGTATGGAAATAGCAACATCGAAGCAT
ACAGGAAAAGATCAAATGAGAGCCCTCATGTCTACGCTATTGCAGATACAGCAATCCGTGAAATGATAAGAGATGAAGTT
AACCAATCCATCATTATAAGTGGAGAGAGTGGAGCAGGGAAAACTGAGACAGCAAAGATAGCAATGCAATACTTGGCTGC
TCTTGGAGGTGGAAGTGGGATCGAGTATGAGATATTAAAGACTAATCCCATCTTGGAAGCATTTGGAAATGCAAAAACAT
TGAGAAACGATAATTCTAGTCGTTTTGGGAAGCTGATAGAGATTCATTTTAGTGAAACAGGAAAGATTTCTGGTGCTAAA
GTCCAAACATTTTTGCTAGAAAAGTCTAGAGTGGTTCAATGTGCGGAAGGAGAAAGGTCATATCATATATTTTACCAGCT
TTGTGCTGGGGCTTCACCTACTCTTAGAGAGAAGCTAAATTTGACAAGCGCAGAAGAGTATAAATATTTGCAACAAAGCA
ATTGTTATTCAATTAACGGAGTTGATGACGCTGAACGTTTTCAAGCTGTCACGGAAGCTCTAGACATTGTGCACGTTAGT
AAAGAAGATCAAGAAAGCGTATTTGCAATGCTTGCAGCAGTACTATGGCTAGGGAATGTTTCTTTCACCGCTATTGACAA
TGAAAACCACGTTGAACCTGAGGAAGATGAAAGTTTGTCAACTGTTGCTAAATTGATTGGGTGCAACATCAATGAGCTAA
AGCTAGCTCTATCGAATCGTAATATGAAAGTTAGAAATGACACAATTATACAGAAGCTAACACTATCGCAGGCCATTGAC
GCAAGAGATGCTTTAGCAAAGTCAATATATGCCTGCCTATTTGACTGGCTGGTTGAACAGATAAACAAATCTCTTGCGGT
GGGAAAAAGGAGGACTGGCAGATCCATCAGCATTCTGGATATCTATGGCTTTGAATCATTTGATAAGAACAGTTTTGAAC
AGTTCTGTATAAATTATGCAAATGAGAGATTGCAGCAACACTTTAATCGTCATCTATTCAAGCTGGAGCAGGAGGAATAT
ATACAGGATGGCATTGACTGGACAAGGGTTGATTTTGAGGACAACCAAAATTGTCTCAGTCTCTTTGAAAAGAAACCATT
AGGTCTGCTCTCGCTTCTTGATGAGGAATCAACATTTCCGAATGGCACAGATCTGACACTTGCCAACAAGCTTAAGGAAC
ACCTAAGTGCTAATTCCTGTTTTAGAGGAGATCGAGGGAAGGCTTTTACGGTTTCTCATTATGCTGGAGAGGTTACATAT
GAGACGACTGGATTTCTAGAGAAGAACCGGGATTTGCTGCATTCAGATTCTATTAAGCTTTTGTCATCTTGCTCTTGCCA
CCTTCCACAAGCCTTCGCTTCTAGCATGCTCATTCATTCTGAAAAGCCTGTTGTTGGTCCTTTATACAAAGCAGGTGGAG
CTGACTCCCAGCGACTGAGTGTAGCAACTAAATTTAAGGATCAACTTTTCCAATTGATGCAACGTCTAGGGAACACGACA
CCACATTTCATTCGCTGCATAAAGCCAAACAATGTTCAGTCTCCGGGGTTGTATGAGCAAGGTCTTGTCTTACAGCAGCT
AAGATGTTGTGGGGTTCTAGAGGTGGTTAGAATCTCCCGGTCTGGATTTCCTACCAGAATGTCTCATCAGAAATTTGCTA
GAAGGTATGGTTTCCTTCTGCTGGAGAGCATTGCAGCAAAAGATCCTCTTAGTGTTTCTGTTGCAATTCTTCATCAGTTC
AACATCTTGCCAGAGATGTATCAAGTCGGCTACACAAAACTGTTTTTCAGAACTGGCCAGATTGGGGTTCTTGAAGATAC
AAGGAACCGCACTCTTCATGGGATCTTACGTCTCCAAAGCTGTTTTAGAGGGCACCAAGCACGGAGTCGTCTAAGAGAGC
ATAAAAGAAGAGTTACTGTTCTTCAGTCATTTGTTCGTGGAGAAAAGGTAAGAAAGGAATACACAGAGTTACTTCGGAGG
CATAGAGCTTCTGCTGCTATACAAAGCCATGTTAAGAGAAGGATTGCTAAGAGACAGTATAAAGCTACAGTTGATGCATC
TGTTGTAATACAGTCAGCAATTCGTGGCGAGCTGGTTAGAAGATGTGCTGGGGATATTGGTTGGCTAAAATCTGGAGGCA
CCAAGAGAAATGAGTCAGACGAGGTGCTGGTGAAGGCATCAGTACTTTCAGAACTTCAGCGCAGGGTTCTGAAAAGCGAA
GCTGCACTTCGTGAGAAAGAAGAAGAGAACGACATTCTCCGACAAAGACTCCAGCAGTACGACAACAGGTGGTCTGAATA
CGAAACCAAGATGAAGTCAATGGAAGAGATTTGGCAAAAGCAAATGAGATCATTGCAGTCCAGTCTTTCCATTGCCAAGA
AAAGCCTAGAGGTTGAGGACTCAGCGAGAAACTCTGATGCGTCGGTGAACGCAAGCGACGCAACGGAGTTATCAGGAAGC
GGCGGTGATTTCAGGACTCATGGGAGGACAAGAAGTGTTGGTGTGGGGTTAAGCGTGATAAGCAGGTTAGCAGAGGAGTT
CGGACAGAGAGCTCAGGTGTTTGGTGATGACACAAAGTTCTTGATGGAAGTGAAGTCTGGTCAGGTGGAGGCGAACTTGG
ATCCGGAGAGGGAGCTAAGAAGGTTGAAACAGATGTTTGACACGTGGAAGAAGGATTATGGAGGGAGGCTAAGGGAAACG
AAACTGATACTTGGCAAGCTTGGGAGTGAAGGAGGTGGTGGTTCAGCGGAGAGAGTGAAGATGAAGTGGTGGGGGAGGTT
GAAGAGTACCAGGTTTTAA
Bn_scaffoldA06:2048649-2048662:- does not have available information here.