Microexon ID Bn_scaffoldA05:35915479-35915492:-
Species Brassica   Napus
Coordinates scaffoldA05:35915479..35915492
Microexon Cluster ID MEP38
Size 14
Phase 1
Pfam Domain Motif Myosin_head
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) 46,14,48
Microexon location in the Microexon-tag 2
Microexon-tag DNA Seq CAYTTYARTRMAACTGGRAARATATSTGGTGCYAADATTCAAACWTTTYTRCTTGARAAGTCWAGAGTWGTYCARYKTGCWGAWGGWGARAGRTCATAYCATATWTTT
Logo of Microexon-tag DNA Seq NT60 Logo
Alignment of exons MSA
Microexon DNA seq TTTTACTAGAAAAG
Microexon Amino Acid seq FLLEK
Microexon-tag DNA Seq CATTTTAGTGAAAGCGGAAAGATATCGGGTGCTCAAGTTCAGACCTTTTTACTAGAAAAGTCTAGAGTGGTCCAATGTGCTGAAGGGGAAAGGTCATACCATATATTT
Microexon-tag Amino Acid Seq HFSESGKISGAQVQTFLLEKSRVVQCAEGERSYHIF
Microexon-tag spanning region35915332-35915638
Microexon-tag prediction score0.9655
Overlapped with the annotated transcript (%) 100
New Transcript ID BnaA05T0358400ZSx
Reference Transcript ID BnaA05T0358400ZS
Gene ID BnaA05G0358400ZS
Gene Name NA
Transcript ID BnaA05T0358400ZS
Protein ID
Gene ID BnaA05G0358400ZS
Gene Name
Pfam domain motif Myosin_head
Motif E-value 9.10E-244
Motif start 145
Motif end 803
Protein seq >BnaA05T0358400ZS
MSQKVSPSMLSLKSLPADYRFDGENSSRPSVGLRNGVSQAGDSEDSPYSGHGVSLEEQSLTDDVEPGAATMPLPQNDERR
WSDTSAYARKKILQSWVQLPNGNWELGKILSTSGEESVISLPEGKVMKVISETLVPANPDILDGVDDLMQLSYLNEPSVL
YNLNYRYNQDMIYTKAGPVLVAVNPFKEVPLYGNRYIEAYRKKSNESPHVYAIADTAIREMIRDEVNQSIIISGESGAGK
TETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSESGKISGAQVQTFLLEKSRVVQC
AEGERSYHIFYQLCAGASPALREKLNLTSAHEYKYLGQSNCYSINGVDDAERFHSVKEALDIVHVSKEDQESVFAMLAAV
LWLGNVSFTVIDNENHVEPVADESLSTVAKLIGCNIIDLKLSLSKRNMRVGKDTIVQKLTLPQAIDARDALAKSVYSCLF
DWLVEQINKSLAVGKRRTGRSISILDIYGFESFDKNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWTRVDFED
NQDCLSLFEKKPLGLLSLLDEESTFPNGTDLTLANKLKQHLHSNSCFRGDREKLFTVVHYAGEVTYDTTGFLEKNRDLLH
LDSIQLLSSCSCHLPQAFASSMLIQSEKPVVGPLYKAGGADSQRLSVATKFKGQLFQLMQRLGNTTPHFIRCIKPNNVQS
PGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRVSHQKFARRYGFLLVENIADKDPLSVSVAILHQFNILPEMYQVGYTKL
FFRTGQIGVLEDTRNRTLHGILRVQSSFRGYQARCHLKELKMGISILQSFVRGDKVRKEFAELRRRHRAAATIQSQVKSK
FARKQYKGITDASVLIQSAIRGWLVRRCSGDLRWLKSVGTKTNESGEVLVKASVLSDLQRRVLKSEAALREKEEENDILQ
QRLQQYENRWSEYETKMKSMEEIWQKQMRSLQSSLSIAKKSLAVEDSARNSDASVNASDATDWDSSSNQFKSQASNGGGG
RQQQQPMSAGLSVIGRLAEEFEQRAQVFGDDAKFLVEVKSGQVEANLNPDRELRRLKQMFETWKKDYGGRLRETKMILSK
LGSEESSGSMEKVKRKWWGRRNSTRY*
CDS seq >BnaA05T0358400ZS
ATGTCCCAAAAGGTGTCTCCATCCATGCTGTCTCTTAAATCTTTGCCAGCAGACTACAGATTCGATGGCGAAAATTCTTC
TAGACCGAGTGTTGGCTTGAGGAATGGTGTTAGTCAAGCTGGAGATAGTGAGGATTCACCATATAGTGGTCACGGTGTGT
CCCTTGAAGAGCAGTCTTTAACTGATGATGTGGAGCCTGGTGCTGCTACAATGCCCTTGCCTCAGAATGATGAACGCAGG
TGGAGTGATACTAGCGCATATGCTCGGAAGAAGATACTGCAATCTTGGGTTCAACTTCCAAATGGTAACTGGGAGCTTGG
GAAGATACTGTCAACTTCAGGAGAAGAGTCTGTTATCTCTTTGCCAGAGGGAAAAGTTATGAAAGTTATATCAGAAACTC
TAGTACCTGCAAATCCTGATATTCTTGATGGAGTGGATGATCTAATGCAACTAAGTTACTTAAATGAGCCATCAGTGTTG
TACAATCTCAACTATAGGTACAACCAAGACATGATATATACAAAAGCTGGACCAGTTTTGGTGGCTGTGAATCCTTTCAA
GGAGGTTCCTCTGTATGGAAATCGCTACATTGAAGCATACAGGAAGAAATCAAACGAAAGTCCTCATGTCTATGCCATTG
CAGACACAGCAATTCGTGAAATGATACGCGATGAGGTTAACCAATCTATCATTATCAGCGGCGAGAGTGGAGCAGGGAAA
ACTGAGACAGCTAAGATAGCTATGCAATACTTGGCTGCTCTCGGAGGTGGAAGCGGGATCGAGTATGAGATACTTAAGAC
TAATCCCATTTTGGAAGCATTTGGAAATGCTAAAACTTTGAGAAATGATAACTCTAGTCGTTTTGGGAAGCTGATAGAGA
TTCATTTTAGTGAAAGCGGAAAGATATCGGGTGCTCAAGTTCAGACCTTTTTACTAGAAAAGTCTAGAGTGGTCCAATGT
GCTGAAGGGGAAAGGTCATACCATATATTTTACCAACTTTGTGCTGGGGCTTCACCTGCGTTAAGAGAGAAGCTAAATCT
GACAAGCGCACATGAGTACAAGTATTTGGGACAGAGTAATTGTTATTCAATCAATGGAGTTGATGATGCTGAACGTTTTC
ATAGTGTTAAGGAAGCTCTAGACATTGTTCATGTTAGTAAAGAAGATCAAGAAAGTGTGTTCGCAATGCTTGCTGCAGTA
TTATGGCTGGGGAATGTTTCCTTCACCGTTATTGACAATGAAAACCATGTTGAGCCTGTAGCAGATGAAAGTTTGTCAAC
TGTTGCTAAATTAATTGGGTGCAACATCATTGATCTTAAGCTAAGTTTATCGAAACGTAACATGAGAGTTGGAAAAGATA
CCATTGTGCAGAAGCTAACACTACCGCAGGCCATTGATGCAAGAGATGCTTTAGCAAAATCGGTTTATTCATGCCTGTTT
GACTGGCTGGTTGAGCAGATCAACAAGTCTCTTGCAGTGGGGAAGAGGCGAACTGGGAGATCCATCAGCATTCTTGATAT
CTATGGCTTTGAATCATTTGATAAAAATAGCTTTGAGCAGTTCTGTATAAATTATGCAAATGAGAGATTGCAGCAACACT
TTAACCGTCATCTATTCAAGCTGGAGCAAGAGGAATATATCCAAGATGGTATTGACTGGACAAGGGTTGATTTTGAGGAC
AACCAAGATTGTCTTAGTCTCTTTGAAAAGAAACCATTGGGGCTGCTTTCTCTTTTGGACGAGGAATCAACATTTCCGAA
TGGCACAGATTTGACACTTGCAAACAAGCTAAAACAGCATCTACACTCTAATTCATGTTTCAGAGGAGATCGAGAGAAGC
TTTTCACAGTTGTGCATTATGCAGGAGAGGTTACATATGACACAACAGGATTTCTAGAGAAGAACAGAGACCTGTTGCAC
TTGGATTCTATTCAGCTTTTGTCCTCTTGCTCGTGCCACCTTCCTCAAGCGTTTGCTTCTAGCATGCTGATCCAATCCGA
AAAACCTGTAGTCGGTCCTTTGTACAAAGCAGGTGGTGCTGATTCCCAGCGGTTGAGTGTAGCTACCAAATTTAAGGGTC
AACTATTCCAATTGATGCAACGTTTAGGGAACACTACCCCACATTTCATTCGTTGCATCAAGCCAAATAACGTTCAGTCT
CCAGGGTTGTATGAGCAAGGACTTGTCTTACAGCAGCTTAGATGTTGTGGGGTCTTAGAAGTGGTTCGAATCTCACGGTC
TGGATTTCCTACAAGAGTGTCTCATCAGAAATTTGCCAGAAGGTATGGTTTCCTTCTGGTGGAGAACATTGCTGATAAAG
ATCCTCTAAGTGTCTCAGTTGCGATCCTCCATCAGTTTAATATCTTGCCGGAGATGTACCAAGTTGGCTACACGAAGTTG
TTTTTCAGAACCGGCCAGATTGGGGTTCTTGAAGATACAAGGAACCGTACTCTCCATGGCATTTTACGTGTCCAAAGCTC
TTTTAGAGGATACCAAGCACGTTGTCACCTGAAGGAGCTTAAAATGGGGATATCTATTCTTCAGTCATTTGTTCGTGGAG
ATAAAGTAAGAAAAGAGTTTGCCGAGTTACGAAGGAGGCATAGGGCTGCAGCTACTATACAAAGCCAAGTTAAAAGCAAG
TTTGCTAGGAAACAGTATAAGGGTATAACCGATGCGTCGGTTTTGATACAGTCAGCAATTCGTGGCTGGTTGGTTAGAAG
ATGCTCAGGAGATCTTAGATGGCTAAAATCTGTAGGCACTAAGACAAATGAGTCAGGCGAGGTACTAGTGAAGGCATCTG
TACTTTCCGACCTTCAACGTAGAGTACTTAAATCTGAAGCTGCTCTGCGTGAGAAAGAAGAGGAGAACGACATTCTTCAA
CAGAGGCTTCAACAGTACGAGAACCGTTGGTCAGAATACGAGACAAAGATGAAATCAATGGAAGAAATCTGGCAGAAGCA
AATGCGGTCGTTGCAATCTAGCCTCTCCATAGCAAAGAAAAGCCTAGCGGTTGAGGACTCTGCTAGAAACTCGGATGCAT
CGGTCAATGCAAGTGATGCAACGGATTGGGATTCAAGCAGTAATCAGTTCAAGAGTCAGGCAAGCAACGGAGGAGGGGGG
AGACAACAACAACAGCCTATGAGTGCTGGTCTTAGTGTGATTGGACGGTTGGCGGAGGAGTTTGAACAGAGAGCTCAAGT
GTTTGGTGATGATGCGAAGTTCTTGGTGGAAGTGAAGTCTGGTCAGGTGGAAGCGAACTTGAACCCAGACAGAGAGCTGA
GGAGGTTGAAACAGATGTTTGAGACGTGGAAGAAGGATTATGGAGGGAGGTTGAGGGAAACGAAGATGATACTGAGCAAG
CTTGGGAGTGAAGAGAGCAGTGGTTCGATGGAGAAGGTGAAGAGGAAGTGGTGGGGAAGGAGGAATAGCACTAGGTATTG
A
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