Microexon ID Bn_scaffoldA05:12130623-12130636:-
Species Brassica   Napus
Coordinates scaffoldA05:12130623..12130636
Microexon Cluster ID MEP38
Size 14
Phase 1
Pfam Domain Motif Myosin_head
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) 46,14,48
Microexon location in the Microexon-tag 2
Microexon-tag DNA Seq CAYTTYARTRMAACTGGRAARATATSTGGTGCYAADATTCAAACWTTTYTRCTTGARAAGTCWAGAGTWGTYCARYKTGCWGAWGGWGARAGRTCATAYCATATWTTT
Logo of Microexon-tag DNA Seq NT60 Logo
Alignment of exons MSA
Microexon DNA seq TTTTACTAGAAAAG
Microexon Amino Acid seq FLLEK
Microexon-tag DNA Seq CATTTTAGTGAAACAAGGAAGATTTCCGGTGCTAAAATTCAAACATTTTTACTAGAAAAGTCTAGAGTGGTTCAATGTGCGGAAGGAGAGAGGTCATATCACATATTT
Microexon-tag Amino Acid Seq HFSETRKISGAKIQTFLLEKSRVVQCAEGERSYHIF
Microexon-tag spanning region12130484-12130784
Microexon-tag prediction score0.9614
Overlapped with the annotated transcript (%) 100
New Transcript ID BnaA05T0177800ZSx
Reference Transcript ID BnaA05T0177800ZS
Gene ID BnaA05G0177800ZS
Gene Name NA
Transcript ID BnaA05T0177800ZS
Protein ID
Gene ID BnaA05G0177800ZS
Gene Name
Pfam domain motif Myosin_head
Motif E-value 2.50E-237
Motif start 157
Motif end 801
Protein seq >BnaA05T0177800ZS
MSEKAKPFVQSLKSMPADYRFLGSSPLEDSSSGSSVSVSIPRNGHLKNGAVGGVDSGNEDSPYGLQSVSNGDESSLVDED
PIVPLPESNDRRWSDTSVYARKKALQFWVQLPNGNWELGKVLSTSGDESVIKLPEGNVLKVISETLVPANPDILDGVDDL
MQLSYLNEPSVLYNLEYRYNQDMIYTKAGPVLVAVNPFKEVPLYGDRNIEAYRKRSNQSPHVYAIADTAIREMIRDEVNQ
SIIISGESGAGKTETAKIAMQYLASLGGGSGIENEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSETRKISGAKIQ
TFLLEKSRVVQCAEGERSYHIFYQLCAGASPALREKLNLTSAKEYNYLRQSNCYSIKGVDDAERFQAVQEALDIVHVSKD
DQESVFAMLAAVLWLGNVSFSIIDNENHAEPESDESLSTVARLIGCNINDLKLALSKRNIKAIDARDALAKSIYASLFDW
LVEQINKSLAVGKRRTGRSISILDIYGFESFNKNSFEQFCINYANERLQQHFNRHLFKLEQEEYIKDGIDWTRVDFEDNQ
TCLRLFEKKPLGLLSLLDEESTFPNGTDLTLANKLKEHLSDNSCFRGDRGKTFTVAHYAGEVTYETTGFLEKNRDLLHSD
SIKLLSSCSRHLPQAFASSMLVHSEKPVVGPLHKAGGADSQRLSVATKFKGQLFELMQRLGKTTPHFIRCIKPNSVQSPG
LYDQELVLQQLRCCGVLEVVRISRSGFPTRMSHQKFALRYGFLLLESIAAKDPLSVSVAILHQFNILPEMYQVGYTKLFF
RTGQIGVLEDTRNRTLHGILRLQSCFRGHQARSRLREYKRGITFLQSFVRGEKIRKEYTELLRRHRACSAIQSHVKRSIA
KRRYKAKVDASLVIQSAIRGELVRRCGGDIKYGGTKRNESGEVLVHASVLSELQRRVLRTEAALREKEEENDILRQRLQQ
YDNRWSEYEMKMKSMEEIWQKQMRSLQSSLSIAKRSLDVEGSPRYSDASVNASDASDFSVSGDFRTPGRSGSVGLSVISR
LAEEFGQRAQVFGDDTKFLMEVKSGKVEANLSPERELRRLKQMFETWKKDYGGRLRETKTILSRLGNEETGGSPLVERVK
TKWWGRLRSTRF*
CDS seq >BnaA05T0177800ZS
ATGTCTGAGAAGGCTAAGCCATTTGTTCAGTCACTTAAATCCATGCCGGCCGACTATAGATTCCTTGGTTCATCACCCCT
TGAAGACTCCTCCTCTGGCTCAAGTGTTTCTGTGTCTATCCCACGAAATGGCCACTTAAAGAATGGAGCTGTTGGGGGAG
TGGATAGTGGTAATGAGGATTCACCCTATGGCCTGCAAAGCGTTTCAAATGGAGACGAATCTTCACTTGTTGATGAAGAT
CCTATTGTTCCCTTGCCTGAGAGTAATGATCGCAGGTGGAGTGACACTAGCGTCTATGCTCGGAAAAAGGCACTGCAATT
TTGGGTCCAACTTCCAAACGGTAACTGGGAGCTGGGGAAGGTGTTGTCAACTTCAGGGGACGAGTCTGTTATTAAACTGC
CTGAGGGCAATGTTTTAAAGGTCATATCAGAGACTCTAGTACCTGCAAATCCTGATATTCTTGATGGAGTGGACGACCTC
ATGCAACTAAGTTACTTAAATGAGCCATCAGTGTTGTATAACCTTGAGTATCGGTACAACCAAGACATGATATATACAAA
AGCTGGGCCTGTTCTAGTGGCTGTAAATCCCTTCAAGGAGGTTCCTTTGTATGGAGATCGCAACATTGAAGCATACAGGA
AGAGGTCAAACCAGAGCCCTCATGTCTATGCTATTGCAGATACAGCAATCCGTGAAATGATACGAGATGAAGTTAACCAA
TCTATCATTATCAGTGGAGAGAGTGGAGCAGGGAAAACTGAGACAGCGAAAATAGCAATGCAGTACTTGGCTTCTCTTGG
AGGTGGAAGTGGGATCGAGAATGAGATACTAAAGACCAATCCCATCTTGGAAGCCTTTGGAAATGCAAAAACATTGAGAA
ACGATAACTCTAGTCGTTTTGGGAAGCTGATAGAGATTCATTTTAGTGAAACAAGGAAGATTTCCGGTGCTAAAATTCAA
ACATTTTTACTAGAAAAGTCTAGAGTGGTTCAATGTGCGGAAGGAGAGAGGTCATATCACATATTTTATCAGCTTTGTGC
TGGAGCTTCACCTGCGCTTAGAGAGAAGCTAAATTTGACAAGCGCAAAAGAGTATAATTATTTGAGACAGAGCAATTGCT
ATTCAATTAAAGGAGTTGATGACGCTGAACGTTTTCAAGCTGTTCAAGAAGCCTTAGATATTGTGCACGTTAGTAAAGAC
GATCAGGAAAGTGTATTTGCAATGCTTGCAGCAGTGTTATGGCTGGGGAATGTCTCATTCTCCATTATTGACAATGAAAA
CCACGCTGAACCTGAATCAGATGAAAGTTTATCAACTGTTGCTAGATTGATTGGGTGCAACATCAATGACCTTAAGCTAG
CTCTATCAAAGCGTAATATAAAAGCCATTGATGCAAGAGATGCTTTAGCAAAGTCAATCTATGCCAGCCTATTCGACTGG
CTGGTTGAACAGATAAACAAATCTCTTGCCGTAGGAAAGAGGAGAACTGGCAGATCCATCAGCATTCTTGATATCTATGG
CTTTGAATCATTCAATAAGAATAGTTTTGAGCAGTTCTGCATAAATTATGCGAATGAGAGATTGCAGCAACACTTTAATC
GTCATCTATTCAAGCTAGAGCAGGAGGAATATATCAAAGATGGGATTGACTGGACAAGGGTTGATTTTGAGGACAACCAA
ACCTGTCTCAGGCTCTTTGAAAAGAAACCATTAGGTCTGCTCTCTCTTCTTGATGAGGAATCCACATTTCCGAATGGCAC
AGATTTGACACTTGCCAACAAGCTTAAGGAACACCTAAGTGATAATTCCTGTTTTAGAGGAGATCGAGGGAAGACCTTCA
CCGTTGCTCATTATGCTGGAGAGGTTACATATGAGACAACTGGATTTCTAGAGAAGAACCGGGATTTGCTGCATTCGGAT
TCTATTAAGCTTTTGTCGTCTTGCTCTCGCCACCTTCCCCAAGCGTTTGCTTCTAGTATGCTCGTCCATTCTGAAAAACC
TGTTGTTGGACCTTTACACAAAGCAGGTGGAGCTGATTCCCAGCGACTGAGTGTAGCAACTAAATTTAAGGGTCAACTTT
TCGAATTGATGCAGCGTTTAGGAAAGACTACCCCACATTTCATTCGCTGCATAAAGCCAAACAGTGTTCAGTCTCCGGGG
TTGTATGATCAAGAGCTTGTCTTACAGCAGCTACGATGCTGTGGGGTCCTAGAGGTAGTTCGAATTTCTCGGTCTGGGTT
TCCCACGAGAATGTCTCATCAAAAGTTTGCCCTAAGGTATGGATTCCTTCTGCTGGAGAGCATTGCAGCAAAAGATCCAC
TTAGTGTTTCGGTTGCCATTCTTCATCAGTTCAACATCTTGCCAGAGATGTATCAAGTCGGCTACACAAAACTGTTTTTC
AGAACAGGCCAGATTGGGGTTCTTGAAGATACAAGGAACCGCACTCTTCATGGGATTTTACGTCTCCAAAGCTGTTTTAG
AGGGCACCAAGCACGAAGTCGTCTGAGAGAGTATAAAAGAGGAATTACTTTTCTTCAATCATTTGTTCGTGGAGAAAAGA
TAAGAAAGGAATACACAGAGTTACTGCGGAGGCATAGGGCTTGTTCTGCTATACAAAGCCATGTTAAGAGAAGTATTGCT
AAGAGACGGTATAAAGCCAAGGTTGATGCATCTCTTGTAATACAGTCAGCAATTCGTGGCGAGCTGGTTAGAAGATGCGG
TGGGGATATTAAATATGGAGGCACCAAGAGAAATGAGTCAGGGGAGGTGCTAGTGCACGCATCAGTACTTTCCGAACTTC
AGCGCAGGGTTCTGAGAACCGAAGCTGCTCTTCGTGAGAAAGAAGAGGAGAACGATATTCTCAGACAAAGACTCCAGCAG
TACGACAACAGGTGGTCTGAATACGAAATGAAGATGAAATCCATGGAAGAAATTTGGCAAAAGCAGATGAGATCATTGCA
ATCCAGTCTTTCCATTGCAAAGAGAAGCCTAGATGTCGAGGGTTCACCCAGATACTCGGATGCATCTGTGAACGCTAGCG
ATGCAAGTGATTTCTCTGTGAGTGGTGATTTCAGGACCCCTGGGAGAAGTGGAAGTGTTGGTTTAAGCGTGATAAGCCGG
TTAGCAGAAGAATTCGGACAAAGAGCTCAGGTGTTTGGAGATGACACAAAGTTCTTGATGGAAGTGAAATCTGGTAAGGT
GGAAGCAAACTTGAGTCCGGAAAGGGAGCTGAGGAGGCTGAAGCAGATGTTTGAGACTTGGAAGAAGGATTATGGAGGGA
GACTAAGGGAAACGAAAACGATACTTAGCAGACTTGGGAATGAAGAAACTGGTGGTTCACCCTTAGTGGAAAGGGTGAAG
ACGAAGTGGTGGGGGAGGTTAAGGAGTACCAGGTTTTAA
Bn_scaffoldA05:12130623-12130636:- does not have available information here.