
Microexon ID | Bn_scaffoldA05:12130623-12130636:- |
Species | Brassica Napus | Coordinates | scaffoldA05:12130623..12130636 |
Microexon Cluster ID | MEP38 |
Size | 14 |
Phase | 1 |
Pfam Domain Motif | Myosin_head |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 46,14,48 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | CAYTTYARTRMAACTGGRAARATATSTGGTGCYAADATTCAAACWTTTYTRCTTGARAAGTCWAGAGTWGTYCARYKTGCWGAWGGWGARAGRTCATAYCATATWTTT |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | TTTTACTAGAAAAG |
Microexon Amino Acid seq | FLLEK |
Microexon-tag DNA Seq | CATTTTAGTGAAACAAGGAAGATTTCCGGTGCTAAAATTCAAACATTTTTACTAGAAAAGTCTAGAGTGGTTCAATGTGCGGAAGGAGAGAGGTCATATCACATATTT |
Microexon-tag Amino Acid Seq | HFSETRKISGAKIQTFLLEKSRVVQCAEGERSYHIF |
Microexon-tag spanning region | 12130484-12130784 |
Microexon-tag prediction score | 0.9614 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | BnaA05T0177800ZSx |
Reference Transcript ID | BnaA05T0177800ZS |
Gene ID | BnaA05G0177800ZS |
Gene Name | NA |
Transcript ID | BnaA05T0177800ZS |
Protein ID | |
Gene ID | BnaA05G0177800ZS |
Gene Name | |
Pfam domain motif | Myosin_head |
Motif E-value | 2.50E-237 |
Motif start | 157 |
Motif end | 801 |
Protein seq | >BnaA05T0177800ZS MSEKAKPFVQSLKSMPADYRFLGSSPLEDSSSGSSVSVSIPRNGHLKNGAVGGVDSGNEDSPYGLQSVSNGDESSLVDED PIVPLPESNDRRWSDTSVYARKKALQFWVQLPNGNWELGKVLSTSGDESVIKLPEGNVLKVISETLVPANPDILDGVDDL MQLSYLNEPSVLYNLEYRYNQDMIYTKAGPVLVAVNPFKEVPLYGDRNIEAYRKRSNQSPHVYAIADTAIREMIRDEVNQ SIIISGESGAGKTETAKIAMQYLASLGGGSGIENEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSETRKISGAKIQ TFLLEKSRVVQCAEGERSYHIFYQLCAGASPALREKLNLTSAKEYNYLRQSNCYSIKGVDDAERFQAVQEALDIVHVSKD DQESVFAMLAAVLWLGNVSFSIIDNENHAEPESDESLSTVARLIGCNINDLKLALSKRNIKAIDARDALAKSIYASLFDW LVEQINKSLAVGKRRTGRSISILDIYGFESFNKNSFEQFCINYANERLQQHFNRHLFKLEQEEYIKDGIDWTRVDFEDNQ TCLRLFEKKPLGLLSLLDEESTFPNGTDLTLANKLKEHLSDNSCFRGDRGKTFTVAHYAGEVTYETTGFLEKNRDLLHSD SIKLLSSCSRHLPQAFASSMLVHSEKPVVGPLHKAGGADSQRLSVATKFKGQLFELMQRLGKTTPHFIRCIKPNSVQSPG LYDQELVLQQLRCCGVLEVVRISRSGFPTRMSHQKFALRYGFLLLESIAAKDPLSVSVAILHQFNILPEMYQVGYTKLFF RTGQIGVLEDTRNRTLHGILRLQSCFRGHQARSRLREYKRGITFLQSFVRGEKIRKEYTELLRRHRACSAIQSHVKRSIA KRRYKAKVDASLVIQSAIRGELVRRCGGDIKYGGTKRNESGEVLVHASVLSELQRRVLRTEAALREKEEENDILRQRLQQ YDNRWSEYEMKMKSMEEIWQKQMRSLQSSLSIAKRSLDVEGSPRYSDASVNASDASDFSVSGDFRTPGRSGSVGLSVISR LAEEFGQRAQVFGDDTKFLMEVKSGKVEANLSPERELRRLKQMFETWKKDYGGRLRETKTILSRLGNEETGGSPLVERVK TKWWGRLRSTRF* |
CDS seq | >BnaA05T0177800ZS ATGTCTGAGAAGGCTAAGCCATTTGTTCAGTCACTTAAATCCATGCCGGCCGACTATAGATTCCTTGGTTCATCACCCCT TGAAGACTCCTCCTCTGGCTCAAGTGTTTCTGTGTCTATCCCACGAAATGGCCACTTAAAGAATGGAGCTGTTGGGGGAG TGGATAGTGGTAATGAGGATTCACCCTATGGCCTGCAAAGCGTTTCAAATGGAGACGAATCTTCACTTGTTGATGAAGAT CCTATTGTTCCCTTGCCTGAGAGTAATGATCGCAGGTGGAGTGACACTAGCGTCTATGCTCGGAAAAAGGCACTGCAATT TTGGGTCCAACTTCCAAACGGTAACTGGGAGCTGGGGAAGGTGTTGTCAACTTCAGGGGACGAGTCTGTTATTAAACTGC CTGAGGGCAATGTTTTAAAGGTCATATCAGAGACTCTAGTACCTGCAAATCCTGATATTCTTGATGGAGTGGACGACCTC ATGCAACTAAGTTACTTAAATGAGCCATCAGTGTTGTATAACCTTGAGTATCGGTACAACCAAGACATGATATATACAAA AGCTGGGCCTGTTCTAGTGGCTGTAAATCCCTTCAAGGAGGTTCCTTTGTATGGAGATCGCAACATTGAAGCATACAGGA AGAGGTCAAACCAGAGCCCTCATGTCTATGCTATTGCAGATACAGCAATCCGTGAAATGATACGAGATGAAGTTAACCAA TCTATCATTATCAGTGGAGAGAGTGGAGCAGGGAAAACTGAGACAGCGAAAATAGCAATGCAGTACTTGGCTTCTCTTGG AGGTGGAAGTGGGATCGAGAATGAGATACTAAAGACCAATCCCATCTTGGAAGCCTTTGGAAATGCAAAAACATTGAGAA ACGATAACTCTAGTCGTTTTGGGAAGCTGATAGAGATTCATTTTAGTGAAACAAGGAAGATTTCCGGTGCTAAAATTCAA ACATTTTTACTAGAAAAGTCTAGAGTGGTTCAATGTGCGGAAGGAGAGAGGTCATATCACATATTTTATCAGCTTTGTGC TGGAGCTTCACCTGCGCTTAGAGAGAAGCTAAATTTGACAAGCGCAAAAGAGTATAATTATTTGAGACAGAGCAATTGCT ATTCAATTAAAGGAGTTGATGACGCTGAACGTTTTCAAGCTGTTCAAGAAGCCTTAGATATTGTGCACGTTAGTAAAGAC GATCAGGAAAGTGTATTTGCAATGCTTGCAGCAGTGTTATGGCTGGGGAATGTCTCATTCTCCATTATTGACAATGAAAA CCACGCTGAACCTGAATCAGATGAAAGTTTATCAACTGTTGCTAGATTGATTGGGTGCAACATCAATGACCTTAAGCTAG CTCTATCAAAGCGTAATATAAAAGCCATTGATGCAAGAGATGCTTTAGCAAAGTCAATCTATGCCAGCCTATTCGACTGG CTGGTTGAACAGATAAACAAATCTCTTGCCGTAGGAAAGAGGAGAACTGGCAGATCCATCAGCATTCTTGATATCTATGG CTTTGAATCATTCAATAAGAATAGTTTTGAGCAGTTCTGCATAAATTATGCGAATGAGAGATTGCAGCAACACTTTAATC GTCATCTATTCAAGCTAGAGCAGGAGGAATATATCAAAGATGGGATTGACTGGACAAGGGTTGATTTTGAGGACAACCAA ACCTGTCTCAGGCTCTTTGAAAAGAAACCATTAGGTCTGCTCTCTCTTCTTGATGAGGAATCCACATTTCCGAATGGCAC AGATTTGACACTTGCCAACAAGCTTAAGGAACACCTAAGTGATAATTCCTGTTTTAGAGGAGATCGAGGGAAGACCTTCA CCGTTGCTCATTATGCTGGAGAGGTTACATATGAGACAACTGGATTTCTAGAGAAGAACCGGGATTTGCTGCATTCGGAT TCTATTAAGCTTTTGTCGTCTTGCTCTCGCCACCTTCCCCAAGCGTTTGCTTCTAGTATGCTCGTCCATTCTGAAAAACC TGTTGTTGGACCTTTACACAAAGCAGGTGGAGCTGATTCCCAGCGACTGAGTGTAGCAACTAAATTTAAGGGTCAACTTT TCGAATTGATGCAGCGTTTAGGAAAGACTACCCCACATTTCATTCGCTGCATAAAGCCAAACAGTGTTCAGTCTCCGGGG TTGTATGATCAAGAGCTTGTCTTACAGCAGCTACGATGCTGTGGGGTCCTAGAGGTAGTTCGAATTTCTCGGTCTGGGTT TCCCACGAGAATGTCTCATCAAAAGTTTGCCCTAAGGTATGGATTCCTTCTGCTGGAGAGCATTGCAGCAAAAGATCCAC TTAGTGTTTCGGTTGCCATTCTTCATCAGTTCAACATCTTGCCAGAGATGTATCAAGTCGGCTACACAAAACTGTTTTTC AGAACAGGCCAGATTGGGGTTCTTGAAGATACAAGGAACCGCACTCTTCATGGGATTTTACGTCTCCAAAGCTGTTTTAG AGGGCACCAAGCACGAAGTCGTCTGAGAGAGTATAAAAGAGGAATTACTTTTCTTCAATCATTTGTTCGTGGAGAAAAGA TAAGAAAGGAATACACAGAGTTACTGCGGAGGCATAGGGCTTGTTCTGCTATACAAAGCCATGTTAAGAGAAGTATTGCT AAGAGACGGTATAAAGCCAAGGTTGATGCATCTCTTGTAATACAGTCAGCAATTCGTGGCGAGCTGGTTAGAAGATGCGG TGGGGATATTAAATATGGAGGCACCAAGAGAAATGAGTCAGGGGAGGTGCTAGTGCACGCATCAGTACTTTCCGAACTTC AGCGCAGGGTTCTGAGAACCGAAGCTGCTCTTCGTGAGAAAGAAGAGGAGAACGATATTCTCAGACAAAGACTCCAGCAG TACGACAACAGGTGGTCTGAATACGAAATGAAGATGAAATCCATGGAAGAAATTTGGCAAAAGCAGATGAGATCATTGCA ATCCAGTCTTTCCATTGCAAAGAGAAGCCTAGATGTCGAGGGTTCACCCAGATACTCGGATGCATCTGTGAACGCTAGCG ATGCAAGTGATTTCTCTGTGAGTGGTGATTTCAGGACCCCTGGGAGAAGTGGAAGTGTTGGTTTAAGCGTGATAAGCCGG TTAGCAGAAGAATTCGGACAAAGAGCTCAGGTGTTTGGAGATGACACAAAGTTCTTGATGGAAGTGAAATCTGGTAAGGT GGAAGCAAACTTGAGTCCGGAAAGGGAGCTGAGGAGGCTGAAGCAGATGTTTGAGACTTGGAAGAAGGATTATGGAGGGA GACTAAGGGAAACGAAAACGATACTTAGCAGACTTGGGAATGAAGAAACTGGTGGTTCACCCTTAGTGGAAAGGGTGAAG ACGAAGTGGTGGGGGAGGTTAAGGAGTACCAGGTTTTAA |
Bn_scaffoldA05:12130623-12130636:- does not have available information here.