
Microexon ID | Bn_scaffoldA03:19178293-19178306:+ |
Species | Brassica Napus | Coordinates | scaffoldA03:19178293..19178306 |
Microexon Cluster ID | MEP38 |
Size | 14 |
Phase | 1 |
Pfam Domain Motif | Myosin_head |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 46,14,48 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | CAYTTYARTRMAACTGGRAARATATSTGGTGCYAADATTCAAACWTTTYTRCTTGARAAGTCWAGAGTWGTYCARYKTGCWGAWGGWGARAGRTCATAYCATATWTTT |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | TCTTACTAGAAAAG |
Microexon Amino Acid seq | FLLEK |
Microexon-tag DNA Seq | CATTTTAGTGAAACTGGAAAGATATCGGGTGCTCAAGTTCAAACCTTCTTACTAGAAAAGTCTAGAGTGGTCCAATGTGCTGAAGGGGAAAGGTCATATCATATATTT |
Microexon-tag Amino Acid Seq | HFSETGKISGAQVQTFLLEKSRVVQCAEGERSYHIF |
Microexon-tag spanning region | 19178142-19178458 |
Microexon-tag prediction score | 0.9718 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | BnaA03T0360700ZSx |
Reference Transcript ID | BnaA03T0360700ZS |
Gene ID | BnaA03G0360700ZS |
Gene Name | NA |
Transcript ID | BnaA03T0360700ZS |
Protein ID | |
Gene ID | BnaA03G0360700ZS |
Gene Name | |
Pfam domain motif | Myosin_head |
Motif E-value | 5.40E-244 |
Motif start | 145 |
Motif end | 803 |
Protein seq | >BnaA03T0360700ZS MSQKVTPSMNSLKSLPADYRFDGSSVPRKGGFRNGISTSDTAAGDSEDSPYSGHVEQQSLSEDMDTDAATMPLPQSNERR WSDTSAYARKKILQSWIQLPNGNWELGKILSTSGEESVISLAEGKVIKVMSETLVPANPDILDGVDDLMQLSYLNEPSVL YNLNYRYNQDMIYTKAGPVLVAVNPFKEVPLYGNSYIEAYRKRTNDSPHVYAIADTAIREMIRDEVNQSIIISGESGAGK TETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSETGKISGAQVQTFLLEKSRVVQC AEGERSYHIFYQLCAGASSALREKLNLKSAHEYKYLGQSNCYRINGVDDAERFHTVKEALDIVHVSKEDQESVFAMLAAV LWLGNVSFTVIDNENHVEPIADESLLTVAKLIGCNSNELKLSLSKRNMRVGKDTIVQKLTLPQAIDARDALAKSIYSCLF DWLVEQINKSLAVGKRRTGRSISILDIYGFESFDKNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWTRVDFED NQDCLSLFEKKPLGLLSLLDEESTFPNGTDLTLANKLKQHLISNSCFRGTREKLFTVVHYAGEVTYETTGFLEKNRDLLH LDSIQLLSSCSCHLPQAFASSMLIQSEKPVVGPLHKAGGADSQRLSVATKFKGQLFQLMQRLGNTTPHFIRCIKPNNVQS PGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLVENIADKDPLSVSVAILHQFNILPEMYQVGYTKL FFRTGQIGVLEDTRNRTLHGILRVQSSFRGYKARCHLKELRMGIYTLQSFVRGEKVRKEFAYLRKRHRAAATIQSQVKSK IARKQYQDVTEASLVIQSAIRGWLVRRCSGDIGWLKSGEVLVKASVLSELQRRVLKSEAALREKEEENDILQQRLQQYEN RWSEYETKMKSMEEIWQKQMRSLQSSLSIAKKSLAVEDSARNSDASVNASDATDWDSSSNQFKGGGGRQQQQQRPMSAGL SVIGRLAEEFEQRAQVFGDDAKFLVEVKSGQVEANLNPDRELRRLKQMFETWKKDYGGRLRETKMILSKLGSEESGGSME KVKRKWWGRRNSTRY* |
CDS seq | >BnaA03T0360700ZS ATGTCCCAAAAGGTGACTCCATCCATGAACTCACTTAAGTCTCTGCCGGCAGACTATAGATTTGATGGCTCCAGTGTTCC AAGAAAAGGTGGTTTCAGAAATGGGATTAGTACAAGTGATACTGCTGCTGGGGATAGTGAGGATTCACCATATAGTGGGC ACGTTGAACAGCAGTCTTTATCTGAGGATATGGATACTGATGCTGCTACAATGCCCTTGCCTCAGAGTAATGAACGCAGG TGGAGTGACACTAGTGCATATGCTCGGAAGAAGATACTGCAATCTTGGATTCAACTTCCCAATGGTAACTGGGAGCTTGG GAAGATACTGTCAACTTCAGGAGAGGAGTCTGTTATTTCTTTGGCTGAGGGAAAAGTTATAAAAGTCATGTCAGAGACTC TAGTACCTGCAAATCCTGATATTCTTGATGGAGTGGACGATCTAATGCAACTTAGTTACTTAAATGAGCCATCAGTGTTG TACAACCTCAACTATAGGTACAACCAAGACATGATATATACGAAAGCGGGACCAGTTTTGGTGGCTGTGAATCCTTTCAA GGAGGTTCCTTTATACGGAAACAGCTACATTGAAGCATACAGGAAGAGAACAAATGATAGTCCTCATGTGTATGCAATTG CAGATACAGCAATTCGTGAAATGATACGCGATGAAGTTAACCAATCTATCATTATCAGCGGTGAGAGTGGAGCAGGAAAA ACTGAGACAGCTAAGATAGCTATGCAATACTTGGCTGCACTTGGAGGTGGAAGCGGGATTGAATATGAGATACTTAAGAC TAATCCTATCTTGGAAGCATTTGGAAATGCAAAAACATTGAGAAATGATAACTCTAGTCGTTTTGGGAAACTGATAGAGA TTCATTTTAGTGAAACTGGAAAGATATCGGGTGCTCAAGTTCAAACCTTCTTACTAGAAAAGTCTAGAGTGGTCCAATGT GCTGAAGGGGAAAGGTCATATCATATATTTTACCAACTTTGTGCTGGGGCTTCATCTGCACTTAGAGAGAAGCTAAATCT GAAAAGCGCACATGAGTATAAATATTTGGGACAGAGTAATTGTTATAGAATCAATGGAGTTGACGATGCTGAACGTTTCC ATACTGTTAAGGAAGCTCTGGACATTGTTCATGTTAGTAAAGAAGATCAAGAAAGTGTATTCGCGATGCTTGCTGCAGTA TTATGGCTGGGGAATGTTTCTTTCACTGTTATTGACAATGAAAACCACGTTGAACCCATAGCAGATGAAAGTTTGTTAAC TGTTGCTAAATTGATTGGGTGCAACAGCAATGAGCTTAAGCTAAGTTTATCCAAACGTAACATGAGAGTTGGAAAGGACA CCATTGTGCAGAAGCTAACACTACCGCAGGCCATTGATGCAAGAGATGCTTTAGCAAAATCAATTTATTCTTGCCTCTTT GACTGGCTGGTGGAGCAGATCAACAAATCTCTTGCAGTAGGAAAGAGACGAACTGGCAGATCCATCAGCATTCTTGATAT CTACGGCTTCGAATCATTTGATAAAAACAGCTTTGAGCAGTTCTGTATAAATTATGCAAATGAGAGATTGCAGCAACACT TTAATCGTCATCTATTCAAGCTGGAGCAAGAGGAATATATCCAGGATGGAATTGACTGGACAAGGGTTGATTTTGAGGAC AACCAAGATTGTCTTAGTCTCTTTGAAAAGAAACCATTAGGGCTGCTCTCTCTTTTGGATGAGGAATCAACATTTCCGAA TGGCACAGATTTGACACTTGCAAACAAGCTAAAACAACATTTGATCTCTAATTCATGTTTCAGAGGAACTCGAGAGAAGC TTTTCACAGTTGTCCACTATGCAGGAGAGGTTACATATGAGACGACTGGATTTCTAGAAAAGAACAGAGATTTGTTGCAT TTGGATTCTATACAACTGTTGTCCTCTTGCTCCTGCCACCTTCCTCAAGCATTTGCATCTAGCATGCTGATCCAATCTGA AAAACCTGTTGTTGGTCCTTTACACAAAGCAGGTGGTGCTGATTCCCAGCGGTTGAGTGTAGCTACTAAGTTTAAGGGTC AACTATTCCAATTGATGCAACGTTTAGGAAACACTACCCCACATTTCATCCGCTGCATCAAGCCAAATAACGTACAGTCA CCAGGGTTGTATGAGCAAGGGCTTGTCTTACAGCAGCTAAGATGCTGTGGGGTCCTAGAAGTGGTTCGAATCTCACGGTC TGGATTTCCCACAAGAATGTCTCATCAGAAATTCGCCAGAAGGTATGGTTTCCTTCTGGTGGAGAACATTGCTGATAAAG ATCCTCTAAGTGTTTCAGTTGCAATTCTCCATCAGTTTAACATCTTGCCAGAGATGTATCAAGTTGGCTACACGAAGTTG TTCTTCAGAACCGGACAGATTGGTGTTCTTGAAGATACAAGGAACCGTACTCTCCATGGCATTTTACGTGTGCAAAGCTC TTTTAGAGGATACAAAGCACGCTGTCACCTGAAGGAGCTTAGAATGGGAATCTATACTCTCCAGTCATTCGTTCGCGGAG AGAAAGTAAGAAAAGAGTTTGCTTATTTACGAAAAAGGCATAGAGCTGCTGCTACTATACAAAGCCAAGTTAAAAGCAAG ATTGCTAGGAAACAGTATCAGGACGTAACAGAAGCGTCTCTTGTGATACAATCAGCAATTCGTGGTTGGTTGGTTAGAAG ATGCTCAGGGGACATTGGATGGCTAAAATCAGGCGAGGTGCTGGTGAAGGCGTCAGTACTCTCCGAGCTTCAACGCAGGG TACTTAAATCAGAAGCTGCTCTACGTGAGAAAGAAGAAGAGAACGACATTCTTCAACAGAGGCTTCAACAGTACGAGAAC AGGTGGTCGGAGTACGAGACAAAGATGAAGTCAATGGAGGAGATCTGGCAGAAGCAGATGCGGTCTTTGCAGTCCAGCCT CTCCATAGCAAAGAAAAGCCTAGCGGTTGAGGACTCGGCGAGAAACTCAGATGCATCGGTTAATGCTAGTGATGCAACGG ATTGGGATTCAAGCAGTAACCAGTTCAAGGGAGGAGGGGGGAGACAACAACAGCAACAACGACCTATGAGCGCGGGGCTT AGTGTGATTGGACGGTTAGCTGAGGAGTTTGAACAGAGAGCTCAAGTGTTTGGTGATGATGCGAAGTTTTTGGTGGAAGT GAAGTCTGGTCAGGTGGAAGCGAACTTGAATCCGGATAGAGAGCTGAGGAGGTTGAAACAGATGTTTGAGACGTGGAAAA AGGATTATGGAGGGAGGTTGAGGGAAACGAAGATGATACTGAGTAAGCTTGGGAGTGAAGAGAGTGGTGGTTCGATGGAG AAGGTGAAGAGGAAGTGGTGGGGAAGGAGAAATAGCACTAGGTATTGA |
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