
Microexon ID | Bn_scaffoldA01:9889889-9889902:- |
Species | Brassica Napus | Coordinates | scaffoldA01:9889889..9889902 |
Microexon Cluster ID | MEP38 |
Size | 14 |
Phase | 1 |
Pfam Domain Motif | Myosin_head |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 46,14,48 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | CAYTTYARTRMAACTGGRAARATATSTGGTGCYAADATTCAAACWTTTYTRCTTGARAAGTCWAGAGTWGTYCARYKTGCWGAWGGWGARAGRTCATAYCATATWTTT |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | TTCTGCTAGAAAAG |
Microexon Amino Acid seq | FLLEK |
Microexon-tag DNA Seq | CATTTTAGTGCAAAGGGAAAGATATGCGGAGCCAAACTTGAAACTTTTCTGCTAGAAAAGTCAAGAGTGGTTCAGCTGTCCAATGGCGAGAGATCCTACCATATCTTT |
Microexon-tag Amino Acid Seq | HFSAKGKICGAKLETFLLEKSRVVQLSNGERSYHIF |
Microexon-tag spanning region | 9889761-9890047 |
Microexon-tag prediction score | 0.9532 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | BnaA01T0166700ZSx |
Reference Transcript ID | BnaA01T0166700ZS |
Gene ID | BnaA01G0166700ZS |
Gene Name | NA |
Transcript ID | BnaA01T0166700ZS |
Protein ID | |
Gene ID | BnaA01G0166700ZS |
Gene Name | |
Pfam domain motif | Myosin_head |
Motif E-value | 3.30E-235 |
Motif start | 146 |
Motif end | 797 |
Protein seq | >BnaA01T0166700ZS MTIPPSPTMKATPEETMESLSQHDDACERLKDYKSPSLPSRRTSQMPSNRQSLPTSLRDTICPERETKEKDCRTEPISEP EWVNNVEFFITKKLGVWCRGRNGEWHLGKIQSASGDAACVVLSTTEVVEVSMKEILPANPDVLEGVDDLIQLSYLNEPSV LYNLRVRYSQDLIYSKAGPVLIAVNPFKNVQIYGNDIRSAYQKKALVAPHVYAVADAAFDEMMREEKNQSIIISGESGAG KTETAKYAMQYLEALGGGNFGVDNEILKTNCILEAFGNAKTSRNDNSSRFGKLMEIHFSAKGKICGAKLETFLLEKSRVV QLSNGERSYHIFYELCAGASPILKERLNLKEASEYNYLNQSNCLTIDRIDDAQKFHKLMEAFNIVQIPQEHQERAFALLA AVLWLGNVSFEVIDNENHVDVVADEAVTNVAMLMGCDSKELMVVLSTCKLQAGRDCIAKRLTLPQATDMRDSLAKIIYAS LFNWLVEQINTSLEVGKLRTGRSISILDIYGFESFKNNSFEQFCINYANERLQQHFNRHLFKLEQEEYEGDGIDWTKVEF KDNQECLDLIEKKPIGLVSLLDEESNFPKATDTTFANKLKHHLKANSCFRGERRGHGFRVSHYAGEVLYDTNGFLEKNRD PLHVDLIQLLSSCNCQLLNLFSSKMRDKSLKPSLSESMNQSVITKFKSQLFKLMNKLEDTTPHFIRCIKPNSNHLPGVYE ENHVLQQLRCCGVLEIVRISRSGYHTRMTHQDLAARYGFLLDTKLSQDPLSTSDSIMKQFNLPPEMYQVGYRKIYLRTGQ IGLLEERREYVLQGVIGLQKHLRGYKSREYFHNMKKSALILQSYIRGENARRNYIAMQTPATVSSEVTKELDAVIHLQSV VRRWFVRKQLKNSVELKKQSHNEKKKTRRKSRRKVSEVKDLPLEQFQVQPWDLADLQSRVQKVETAIMQKEDENTALKEE LQRFEERWIKHETRMKSMEETWQKHISSMQMSLEAACNIMTPDKTASHGNDSEDTISPGTPTKELKGGSLDDIKDIYVEV DQRRVVFDEDVKRHVEIDELEQVSIAIEKQHAEEELSRLKSRFEKWKKDYKARLRGTKARLRLNGHRNWCGKKSF* |
CDS seq | >BnaA01T0166700ZS ATGACTATACCGCCGTCTCCTACGATGAAAGCTACACCTGAGGAGACGATGGAATCTCTTAGCCAACATGATGATGCGTG CGAGAGGTTGAAGGATTATAAGTCTCCGTCCCTTCCCTCTCGACGCACTTCACAAATGCCGTCGAATCGCCAATCGCTTC CGACGAGCCTCCGTGATACGATTTGTCCGGAGAGAGAGACCAAAGAGAAGGATTGTAGGACAGAGCCGATCTCGGAGCCT GAATGGGTCAATAACGTCGAGTTTTTCATCACCAAGAAACTTGGTGTTTGGTGTCGAGGTCGTAATGGGGAGTGGCACTT GGGGAAGATACAATCTGCTTCGGGTGATGCGGCTTGTGTTGTCTTGTCCACCACGGAAGTTGTGGAAGTATCAATGAAAG AGATTCTCCCTGCAAACCCAGATGTTTTGGAGGGAGTTGATGACCTTATACAGCTTAGTTACTTGAATGAACCATCTGTT CTTTACAACCTCAGAGTCAGATACTCACAAGACTTGATTTACAGTAAAGCAGGACCAGTTCTGATTGCAGTGAATCCGTT TAAGAATGTTCAGATTTATGGTAACGACATTCGATCAGCCTATCAAAAGAAGGCTTTGGTTGCTCCTCATGTTTATGCAG TGGCTGATGCAGCTTTTGATGAGATGATGAGAGAGGAGAAGAACCAATCTATTATCATAAGTGGAGAAAGTGGAGCTGGG AAAACTGAGACAGCAAAATATGCAATGCAGTACTTGGAAGCTCTTGGTGGAGGTAACTTTGGGGTGGATAATGAAATCCT AAAGACTAACTGTATACTTGAAGCTTTTGGGAATGCTAAAACATCAAGAAATGATAACTCTAGCCGATTTGGGAAACTGA TGGAGATTCATTTTAGTGCAAAGGGAAAGATATGCGGAGCCAAACTTGAAACTTTTCTGCTAGAAAAGTCAAGAGTGGTT CAGCTGTCCAATGGCGAGAGATCCTACCATATCTTTTATGAATTGTGTGCAGGTGCTTCACCAATTCTTAAAGAGAGATT GAACCTTAAAGAAGCAAGTGAATACAACTATTTGAACCAGAGCAACTGCTTAACCATTGATCGCATCGATGATGCTCAGA AATTTCACAAATTGATGGAAGCTTTCAACATTGTTCAGATTCCTCAAGAACATCAAGAACGTGCATTTGCACTGCTTGCA GCTGTCTTATGGTTAGGGAATGTATCTTTTGAAGTGATTGACAATGAAAACCATGTGGACGTGGTAGCAGATGAAGCTGT CACTAACGTAGCTATGTTAATGGGATGCGACTCAAAAGAGCTTATGGTGGTTTTGTCTACATGCAAGCTCCAAGCTGGTA GAGATTGCATAGCTAAAAGACTGACACTGCCACAGGCGACTGATATGAGGGATTCACTAGCGAAAATCATATATGCAAGC CTTTTCAACTGGCTTGTTGAGCAAATAAACACTTCACTTGAAGTTGGTAAATTAAGGACAGGAAGATCTATTAGTATCCT TGACATATATGGTTTTGAATCATTCAAGAATAATAGCTTTGAACAATTTTGCATAAACTATGCAAATGAAAGACTGCAAC AACATTTCAACCGACATCTATTTAAACTTGAACAAGAGGAATATGAAGGGGATGGAATTGATTGGACTAAGGTCGAATTC AAAGACAATCAAGAGTGTCTAGATCTTATTGAGAAGAAACCCATTGGTTTGGTATCACTACTAGATGAGGAATCAAATTT TCCAAAGGCAACTGATACAACGTTTGCCAACAAGCTGAAGCATCATTTGAAAGCTAACTCTTGTTTCAGGGGAGAAAGAA GAGGTCATGGCTTCAGAGTTAGTCATTATGCCGGAGAGGTTCTCTATGATACAAATGGCTTCCTGGAAAAGAACAGAGAT CCACTGCATGTTGATCTTATCCAACTTTTGTCATCATGCAACTGTCAATTACTGAACCTGTTTTCTTCTAAGATGCGTGA CAAGTCTCTTAAGCCATCCTTGTCGGAATCCATGAATCAAAGTGTTATTACAAAGTTTAAGAGCCAACTATTCAAGCTGA TGAACAAGTTAGAAGACACCACTCCTCACTTTATTCGATGCATAAAGCCAAACTCAAATCATCTTCCTGGAGTTTACGAA GAGAATCATGTTCTACAACAGCTTAGATGTTGTGGCGTTTTGGAGATTGTTAGAATATCAAGATCAGGTTATCATACTAG GATGACACATCAGGATCTTGCAGCAAGATATGGATTCTTACTGGACACAAAACTCTCCCAGGATCCACTTAGCACATCAG ATTCTATTATGAAACAGTTCAATCTTCCTCCTGAAATGTATCAAGTTGGATATAGAAAAATATACCTTCGAACCGGGCAA ATTGGCCTACTTGAGGAAAGAAGAGAATATGTTCTGCAGGGTGTAATTGGATTACAGAAGCATCTTCGTGGTTACAAGTC TCGTGAATACTTCCACAATATGAAGAAATCAGCATTGATACTTCAATCTTATATCCGCGGTGAAAATGCCAGGAGAAACT ATATTGCGATGCAAACACCGGCCACAGTTTCCTCAGAAGTAACTAAAGAGCTTGATGCAGTCATACATTTGCAATCTGTG GTACGGAGATGGTTCGTTCGTAAGCAGTTAAAAAACAGTGTGGAACTGAAGAAACAATCACACAATGAGAAGAAAAAAAC GAGAAGAAAGTCAAGGAGGAAGGTTTCAGAAGTCAAGGATCTTCCTTTAGAGCAGTTTCAAGTCCAACCTTGGGATCTAG CTGATCTCCAGAGCCGGGTTCAGAAAGTCGAAACAGCTATAATGCAGAAGGAAGATGAAAACACTGCATTGAAGGAGGAG TTGCAACGGTTTGAGGAAAGATGGATAAAGCACGAAACAAGAATGAAGTCAATGGAGGAAACATGGCAAAAACATATCTC TTCAATGCAGATGAGTCTGGAAGCTGCATGTAATATTATGACTCCAGACAAGACTGCAAGTCACGGTAATGACTCAGAGG ACACAATCTCCCCTGGAACTCCTACAAAAGAGCTCAAGGGTGGTAGCTTGGATGATATTAAGGATATTTATGTAGAAGTT GATCAACGTAGAGTTGTATTTGATGAAGATGTGAAGCGTCATGTGGAAATAGACGAACTGGAACAAGTGTCGATTGCAAT CGAGAAGCAGCATGCAGAAGAAGAACTCAGTAGACTGAAGTCAAGATTTGAGAAGTGGAAGAAAGATTACAAAGCGAGAC TACGAGGGACAAAGGCAAGGCTCCGGTTAAATGGACACAGGAACTGGTGCGGCAAGAAAAGCTTTTGA |
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