
Microexon ID | Zm_3:171047237-171047250:+ |
Species | Zea mays | Coordinates | 3:171047237..171047250 |
Microexon Cluster ID | MEP37 |
Size | 14 |
Phase | 1 |
Pfam Domain Motif | Trigger_N |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 46,14,48 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | GYTSSTRCWGCACMRCCARTTCCWGGHTTYCGMAGRSWRAAAGGAGGRAAAACAYCARAKRTACCMARARRCWTYCTWYTRSARATKMTTGGWSMAKMMMRAGTBAMS |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | GGAAAACATCAAAT |
Microexon Amino Acid seq | GKTSN |
Microexon-tag DNA Seq | GCCCGTGATGCGCCACCGGTTCCTGGTTTTAGAAAGTCCAAAGGAGGGAAAACATCAAATATACCCAGCAGCATCCTGCTGCAGATGCTTGGCAAGAGCCGGGTCACC |
Microexon-tag Amino Acid Seq | ARDAPPVPGFRKSKGGKTSNIPSSILLQMLGKSRVT |
Microexon-tag spanning region | 171046976-171047587 |
Microexon-tag prediction score | 0.9486 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | Zm00001d042533_T001x |
Reference Transcript ID | Zm00001d042533_T001 |
Gene ID | Zm00001d042533 |
Gene Name | NA |
Transcript ID | Zm00001d042533_T001 |
Protein ID | Zm00001d042533_P001 |
Gene ID | Zm00001d042533 |
Gene Name | NA |
Pfam domain motif | Trigger_N |
Motif E-value | 1.7e-10 |
Motif start | 88 |
Motif end | 191 |
Protein seq | >Zm00001d042533_P001 MASAATATLPKVQLRPRCNSYFQVTGQVHAHTKTCGACKCPTHIHGLLVSAGGRRTFLPVSAVGSGQGSSVTEADRKSDL SLENVKTSVVSRDGEKINVRVQLPGKATQKVFDEALTFLARDAPPVPGFRKSKGGKTSNIPSSILLQMLGKSRVTKFVLQ EILSITIEEFVKKENLKVKPEIQTTQSEGEMESAFAPGSAFGFNVVLQLETPDSDDPEEKPGSDDDLQEESGSSE* |
CDS seq | >Zm00001d042533_T001 ATGGCCTCGGCTGCTACTGCAACCCTCCCCAAGGTTCAGTTGAGGCCAAGATGCAACAGCTACTTCCAGGTGACCGGTCA AGTCCATGCCCACACCAAAACATGCGGTGCCTGCAAGTGTCCGACCCATATCCACGGGTTGCTTGTTTCAGCTGGAGGAA GGAGGACATTCCTGCCGGTGTCTGCAGTTGGATCAGGTCAGGGCTCATCGGTCACTGAGGCCGACAGGAAGAGCGATTTG TCGCTGGAGAACGTCAAGACGTCCGTTGTATCCCGCGACGGTGAAAAGATTAATGTACGAGTGCAGTTGCCTGGAAAGGC GACGCAAAAGGTGTTTGATGAGGCTCTGACGTTCTTGGCCCGTGATGCGCCACCGGTTCCTGGTTTTAGAAAGTCCAAAG GAGGGAAAACATCAAATATACCCAGCAGCATCCTGCTGCAGATGCTTGGCAAGAGCCGGGTCACCAAATTCGTTCTTCAG GAAATACTGAGCATCACCATTGAAGAATTTGTCAAGAAGGAAAACCTGAAGGTGAAACCTGAGATCCAGACAACCCAGTC CGAAGGCGAGATGGAGTCCGCGTTCGCGCCGGGATCAGCATTTGGGTTCAATGTTGTCCTTCAGCTCGAGACACCTGACT CTGATGATCCAGAGGAGAAACCTGGCTCTGATGACGATTTACAGGAGGAATCTGGTTCCTCGGAGTAG |
Microexon DNA seq | GGAAAACATCAAAT |
Microexon Amino Acid seq | GKTSN |
Microexon-tag DNA Seq | GCCCGTGATGCGCCACCGGTTCCTGGTTTTAGAAAGTCCAAAGGAGGGAAAACATCAAATATACCCAGCAGCATCCTGCTGCAGATGCTTGGCAAGAGCCGGGTCACC |
Microexon-tag Amino Acid seq | ARDAPPVPGFRKSKGGKTSNIPSSILLQMLGKSRVT |
Transcript ID | Zm00001d042533_T001 |
Gene ID | Zm.15619 |
Gene Name | NA |
Pfam domain motif | Trigger_N |
Motif E-value | 1.7e-10 |
Motif start | 88 |
Motif end | 191 |
Protein seq | >Zm00001d042533_T001 MASAATATLPKVQLRPRCNSYFQVTGQVHAHTKTCGACKCPTHIHGLLVSAGGRRTFLPVSAVGSGQGSSVTEADRKSDL SLENVKTSVVSRDGEKINVRVQLPGKATQKVFDEALTFLARDAPPVPGFRKSKGGKTSNIPSSILLQMLGKSRVTKFVLQ EILSITIEEFVKKENLKVKPEIQTTQSEGEMESAFAPGSAFGFNVVLQLETPDSDDPEEKPGSDDDLQEESGSSE* |
CDS seq | >Zm00001d042533_T001 ATGGCCTCGGCTGCTACTGCAACCCTCCCCAAGGTTCAGTTGAGGCCAAGATGCAACAGCTACTTCCAGGTGACCGGTCA AGTCCATGCCCACACCAAAACATGCGGTGCCTGCAAGTGTCCGACCCATATCCACGGGTTGCTTGTTTCAGCTGGAGGAA GGAGGACATTCCTGCCGGTGTCTGCAGTTGGATCAGGTCAGGGCTCATCGGTCACTGAGGCCGACAGGAAGAGCGATTTG TCGCTGGAGAACGTCAAGACGTCCGTTGTATCCCGCGACGGTGAAAAGATTAATGTACGAGTGCAGTTGCCTGGAAAGGC GACGCAAAAGGTGTTTGATGAGGCTCTGACGTTCTTGGCCCGTGATGCGCCACCGGTTCCTGGTTTTAGAAAGTCCAAAG GAGGGAAAACATCAAATATACCCAGCAGCATCCTGCTGCAGATGCTTGGCAAGAGCCGGGTCACCAAATTCGTTCTTCAG GAAATACTGAGCATCACCATTGAAGAATTTGTCAAGAAGGAAAACCTGAAGGTGAAACCTGAGATCCAGACAACCCAGTC CGAAGGCGAGATGGAGTCCGCGTTCGCGCCGGGATCAGCATTTGGGTTCAATGTTGTCCTTCAGCTCGAGACACCTGACT CTGATGATCCAGAGGAGAAACCTGGCTCTGATGACGATTTACAGGAGGAATCTGGTTCCTCGGAGTAG |