
Microexon ID | Zm_2:199264397-199264410:+ |
Species | Zea mays | Coordinates | 2:199264397..199264410 |
Microexon Cluster ID | MEP37 |
Size | 14 |
Phase | 1 |
Pfam Domain Motif | Trigger_N |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 46,14,48 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | GYTSSTRCWGCACMRCCARTTCCWGGHTTYCGMAGRSWRAAAGGAGGRAAAACAYCARAKRTACCMARARRCWTYCTWYTRSARATKMTTGGWSMAKMMMRAGTBAMS |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | GGAAAACTCCAGAC |
Microexon Amino Acid seq | GKTPD |
Microexon-tag DNA Seq | GTTGCCGCCGCTCAACCCCTTCCCGGCTTTCGACGAATGAAAGGAGGGAAAACTCCAGACATACCGAAAGAAGTTGCTCTACACTTAATCGGGCCATCAAAAGTGAAG |
Microexon-tag Amino Acid Seq | VAAAQPLPGFRRMKGGKTPDIPKEVALHLIGPSKVK |
Microexon-tag spanning region | 199264059-199264572 |
Microexon-tag prediction score | 0.9463 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | Zm00001d006126_T001x |
Reference Transcript ID | Zm00001d006126_T001 |
Gene ID | Zm00001d006126 |
Gene Name | NA |
Transcript ID | Zm00001d006126_T001 |
Protein ID | Zm00001d006126_P001 |
Gene ID | Zm00001d006126 |
Gene Name | NA |
Pfam domain motif | Trigger_N |
Motif E-value | 2.1e-09 |
Motif start | 98 |
Motif end | 212 |
Protein seq | >Zm00001d006126_P001 MELSTPVGSSLARTATMALVSPSFKITNQMCARGMPLECQFPHRLPSVACSMLLNTQPSQRTNHKDCGLLQVQCTENLMQ SPVSFSDFSVSVCAQEDGLIKLQVNVSGTMTDSIFEKVFTKNVAAAQPLPGFRRMKGGKTPDIPKEVALHLIGPSKVKKE TIKKIISSTVAEYVQKEGLTVSKNMKVQQSYEELEAAFEPGKEFCFDATVHLQ* |
CDS seq | >Zm00001d006126_T001 ATGGAGTTATCCACTCCCGTCGGGAGCTCCCTTGCTAGAACTGCGACCATGGCCCTCGTTAGCCCCAGCTTCAAGATAAC CAATCAAATGTGTGCCAGGGGTATGCCACTTGAATGCCAATTTCCTCATAGGCTACCATCTGTAGCTTGTTCAATGTTGT TAAACACACAACCTTCACAACGAACCAACCATAAAGATTGTGGTTTGCTTCAGGTGCAATGTACAGAAAACCTTATGCAG TCGCCAGTATCTTTCAGTGACTTCTCTGTTTCAGTGTGTGCTCAAGAGGATGGTCTGATAAAGCTACAGGTAAATGTATC TGGCACAATGACAGATTCTATCTTTGAGAAAGTTTTCACAAAGAATGTTGCCGCCGCTCAACCCCTTCCCGGCTTTCGAC GAATGAAAGGAGGGAAAACTCCAGACATACCGAAAGAAGTTGCTCTACACTTAATCGGGCCATCAAAAGTGAAGAAAGAA ACAATCAAGAAAATTATAAGTAGCACGGTTGCTGAGTATGTTCAAAAGGAGGGCCTGACTGTATCGAAGAATATGAAAGT TCAGCAGAGCTATGAAGAGCTTGAGGCAGCATTTGAACCAGGGAAAGAATTTTGCTTTGACGCAACAGTTCATTTACAAT AA |
Microexon DNA seq | GGAAAACTCCAGAC |
Microexon Amino Acid seq | GKTPD |
Microexon-tag DNA Seq | GTTGCCGCCGCTCAACCCCTTCCCGGCTTTCGACGAATGAAAGGAGGGAAAACTCCAGACATACCGAAAGAAGTTGCTCTACACTTAATCGGGCCATCAAAAGTGAAG |
Microexon-tag Amino Acid seq | VAAAQPLPGFRRMKGGKTPDIPKEVALHLIGPSKVK |
Transcript ID | Zm00001d006126_T001 |
Gene ID | Zm.11833 |
Gene Name | NA |
Pfam domain motif | Trigger_N |
Motif E-value | 2.1e-09 |
Motif start | 98 |
Motif end | 212 |
Protein seq | >Zm00001d006126_T001 MELSTPVGSSLARTATMALVSPSFKITNQMCARGMPLECQFPHRLPSVACSMLLNTQPSQRTNHKDCGLLQVQCTENLMQ SPVSFSDFSVSVCAQEDGLIKLQVNVSGTMTDSIFEKVFTKNVAAAQPLPGFRRMKGGKTPDIPKEVALHLIGPSKVKKE TIKKIISSTVAEYVQKEGLTVSKNMKVQQSYEELEAAFEPGKEFCFDATVHLQ* |
CDS seq | >Zm00001d006126_T001 ATGGAGTTATCCACTCCCGTCGGGAGCTCCCTTGCTAGAACTGCGACCATGGCCCTCGTTAGCCCCAGCTTCAAGATAAC CAATCAAATGTGTGCCAGGGGTATGCCACTTGAATGCCAATTTCCTCATAGGCTACCATCTGTAGCTTGTTCAATGTTGT TAAACACACAACCTTCACAACGAACCAACCATAAAGATTGTGGTTTGCTTCAGGTGCAATGTACAGAAAACCTTATGCAG TCGCCAGTATCTTTCAGTGACTTCTCTGTTTCAGTGTGTGCTCAAGAGGATGGTCTGATAAAGCTACAGGTAAATGTATC TGGCACAATGACAGATTCTATCTTTGAGAAAGTTTTCACAAAGAATGTTGCCGCCGCTCAACCCCTTCCCGGCTTTCGAC GAATGAAAGGAGGGAAAACTCCAGACATACCGAAAGAAGTTGCTCTACACTTAATCGGGCCATCAAAAGTGAAGAAAGAA ACAATCAAGAAAATTATAAGTAGCACGGTTGCTGAGTATGTTCAAAAGGAGGGCCTGACTGTATCGAAGAATATGAAAGT TCAGCAGAGCTATGAAGAGCTTGAGGCAGCATTTGAACCAGGGAAAGAATTTTGCTTTGACGCAACAGTTCATTTACAAT AA |