Microexon ID Zm_2:199264397-199264410:+
Species Zea mays
Coordinates 2:199264397..199264410
Microexon Cluster ID MEP37
Size 14
Phase 1
Pfam Domain Motif Trigger_N
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) 46,14,48
Microexon location in the Microexon-tag 2
Microexon-tag DNA Seq GYTSSTRCWGCACMRCCARTTCCWGGHTTYCGMAGRSWRAAAGGAGGRAAAACAYCARAKRTACCMARARRCWTYCTWYTRSARATKMTTGGWSMAKMMMRAGTBAMS
Logo of Microexon-tag DNA Seq NT60 Logo
Alignment of exons MSA
Microexon DNA seq GGAAAACTCCAGAC
Microexon Amino Acid seq GKTPD
Microexon-tag DNA Seq GTTGCCGCCGCTCAACCCCTTCCCGGCTTTCGACGAATGAAAGGAGGGAAAACTCCAGACATACCGAAAGAAGTTGCTCTACACTTAATCGGGCCATCAAAAGTGAAG
Microexon-tag Amino Acid Seq VAAAQPLPGFRRMKGGKTPDIPKEVALHLIGPSKVK
Microexon-tag spanning region199264059-199264572
Microexon-tag prediction score0.9463
Overlapped with the annotated transcript (%) 100
New Transcript ID Zm00001d006126_T001x
Reference Transcript ID Zm00001d006126_T001
Gene ID Zm00001d006126
Gene Name NA
Transcript ID Zm00001d006126_T001
Protein ID Zm00001d006126_P001
Gene ID Zm00001d006126
Gene Name NA
Pfam domain motif Trigger_N
Motif E-value 2.1e-09
Motif start 98
Motif end 212
Protein seq >Zm00001d006126_P001
MELSTPVGSSLARTATMALVSPSFKITNQMCARGMPLECQFPHRLPSVACSMLLNTQPSQRTNHKDCGLLQVQCTENLMQ
SPVSFSDFSVSVCAQEDGLIKLQVNVSGTMTDSIFEKVFTKNVAAAQPLPGFRRMKGGKTPDIPKEVALHLIGPSKVKKE
TIKKIISSTVAEYVQKEGLTVSKNMKVQQSYEELEAAFEPGKEFCFDATVHLQ*
CDS seq >Zm00001d006126_T001
ATGGAGTTATCCACTCCCGTCGGGAGCTCCCTTGCTAGAACTGCGACCATGGCCCTCGTTAGCCCCAGCTTCAAGATAAC
CAATCAAATGTGTGCCAGGGGTATGCCACTTGAATGCCAATTTCCTCATAGGCTACCATCTGTAGCTTGTTCAATGTTGT
TAAACACACAACCTTCACAACGAACCAACCATAAAGATTGTGGTTTGCTTCAGGTGCAATGTACAGAAAACCTTATGCAG
TCGCCAGTATCTTTCAGTGACTTCTCTGTTTCAGTGTGTGCTCAAGAGGATGGTCTGATAAAGCTACAGGTAAATGTATC
TGGCACAATGACAGATTCTATCTTTGAGAAAGTTTTCACAAAGAATGTTGCCGCCGCTCAACCCCTTCCCGGCTTTCGAC
GAATGAAAGGAGGGAAAACTCCAGACATACCGAAAGAAGTTGCTCTACACTTAATCGGGCCATCAAAAGTGAAGAAAGAA
ACAATCAAGAAAATTATAAGTAGCACGGTTGCTGAGTATGTTCAAAAGGAGGGCCTGACTGTATCGAAGAATATGAAAGT
TCAGCAGAGCTATGAAGAGCTTGAGGCAGCATTTGAACCAGGGAAAGAATTTTGCTTTGACGCAACAGTTCATTTACAAT
AA
Microexon DNA seq GGAAAACTCCAGAC
Microexon Amino Acid seq GKTPD
Microexon-tag DNA Seq GTTGCCGCCGCTCAACCCCTTCCCGGCTTTCGACGAATGAAAGGAGGGAAAACTCCAGACATACCGAAAGAAGTTGCTCTACACTTAATCGGGCCATCAAAAGTGAAG
Microexon-tag Amino Acid seq VAAAQPLPGFRRMKGGKTPDIPKEVALHLIGPSKVK
Transcript ID Zm00001d006126_T001
Gene ID Zm.11833
Gene Name NA
Pfam domain motif Trigger_N
Motif E-value 2.1e-09
Motif start 98
Motif end 212
Protein seq >Zm00001d006126_T001
MELSTPVGSSLARTATMALVSPSFKITNQMCARGMPLECQFPHRLPSVACSMLLNTQPSQRTNHKDCGLLQVQCTENLMQ
SPVSFSDFSVSVCAQEDGLIKLQVNVSGTMTDSIFEKVFTKNVAAAQPLPGFRRMKGGKTPDIPKEVALHLIGPSKVKKE
TIKKIISSTVAEYVQKEGLTVSKNMKVQQSYEELEAAFEPGKEFCFDATVHLQ*
CDS seq >Zm00001d006126_T001
ATGGAGTTATCCACTCCCGTCGGGAGCTCCCTTGCTAGAACTGCGACCATGGCCCTCGTTAGCCCCAGCTTCAAGATAAC
CAATCAAATGTGTGCCAGGGGTATGCCACTTGAATGCCAATTTCCTCATAGGCTACCATCTGTAGCTTGTTCAATGTTGT
TAAACACACAACCTTCACAACGAACCAACCATAAAGATTGTGGTTTGCTTCAGGTGCAATGTACAGAAAACCTTATGCAG
TCGCCAGTATCTTTCAGTGACTTCTCTGTTTCAGTGTGTGCTCAAGAGGATGGTCTGATAAAGCTACAGGTAAATGTATC
TGGCACAATGACAGATTCTATCTTTGAGAAAGTTTTCACAAAGAATGTTGCCGCCGCTCAACCCCTTCCCGGCTTTCGAC
GAATGAAAGGAGGGAAAACTCCAGACATACCGAAAGAAGTTGCTCTACACTTAATCGGGCCATCAAAAGTGAAGAAAGAA
ACAATCAAGAAAATTATAAGTAGCACGGTTGCTGAGTATGTTCAAAAGGAGGGCCTGACTGTATCGAAGAATATGAAAGT
TCAGCAGAGCTATGAAGAGCTTGAGGCAGCATTTGAACCAGGGAAAGAATTTTGCTTTGACGCAACAGTTCATTTACAAT
AA