
Microexon ID | Os_1:38901456-38901469:- |
Species | Oryza sativa | Coordinates | 1:38901456..38901469 |
Microexon Cluster ID | MEP37 |
Size | 14 |
Phase | 1 |
Pfam Domain Motif | Trigger_N |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 46,14,48 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | GYTSSTRCWGCACMRCCARTTCCWGGHTTYCGMAGRSWRAAAGGAGGRAAAACAYCARAKRTACCMARARRCWTYCTWYTRSARATKMTTGGWSMAKMMMRAGTBAMS |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | GGAGAACATCAAAT |
Microexon Amino Acid seq | GRTSN |
Microexon-tag DNA Seq | GCTCGTGATGCACCGCCAGTTCCAGGTTTTAGGAAGTCCAAAGGAGGGAGAACATCAAATATACCAAGCAGCATTCTGCTGCAGATGCTTGGCAAAAGCCGGGTCACC |
Microexon-tag Amino Acid Seq | ARDAPPVPGFRKSKGGRTSNIPSSILLQMLGKSRVT |
Microexon-tag spanning region | 38901062-38901678 |
Microexon-tag prediction score | 0.9565 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | Os01t0894700-01x |
Reference Transcript ID | Os01t0894700-01 |
Gene ID | Os01g0894700 |
Gene Name | NA |
Transcript ID | Os01t0894700-01 |
Protein ID | Os01t0894700-01 |
Gene ID | Os01g0894700 |
Gene Name | NA |
Pfam domain motif | Trigger_N |
Motif E-value | 5.9e-11 |
Motif start | 89 |
Motif end | 211 |
Protein seq | >Os01t0894700-01 MASAATLPKLRFRPKCHGHFQAIYPVHVHIKNCNACKCQIPTHGLLVSSARSRPVLPVSAVGSGGGSSVAEDERKSGLSL QNAKTSVVSRDDETINVRVDLPGKATQKVFDEALTSLARDAPPVPGFRKSKGGRTSNIPSSILLQMLGKSRVTKFVLQEI LSITVGDFVKKENLKVNPEIKTTQSEEELESSFTPGSSFSFSVVLQLEKPESDETSENSESDEASEPSS* |
CDS seq | >Os01t0894700-01 ATGGCGTCAGCGGCGACCCTTCCGAAGCTTCGGTTCAGGCCAAAATGCCACGGCCACTTCCAGGCAATCTATCCGGTTCA TGTCCATATCAAGAACTGCAATGCTTGCAAGTGTCAGATTCCTACCCACGGGTTGCTTGTTTCCAGCGCGAGAAGTCGTC CTGTCCTGCCAGTGTCGGCAGTTGGATCAGGCGGGGGCTCATCGGTTGCTGAGGACGAGAGGAAGAGTGGCTTGTCGCTG CAGAACGCCAAGACATCCGTTGTGTCACGCGACGATGAAACGATCAATGTAAGAGTGGATTTGCCTGGAAAGGCGACACA GAAGGTGTTTGATGAAGCCTTGACAAGCTTGGCTCGTGATGCACCGCCAGTTCCAGGTTTTAGGAAGTCCAAAGGAGGGA GAACATCAAATATACCAAGCAGCATTCTGCTGCAGATGCTTGGCAAAAGCCGGGTCACCAAGTTCGTTCTTCAGGAAATA CTCAGCATCACTGTTGGTGATTTTGTAAAGAAGGAAAACCTGAAGGTGAACCCTGAAATCAAGACAACCCAGTCAGAAGA AGAGCTCGAGTCATCGTTTACGCCGGGTTCATCATTCAGTTTCAGTGTTGTTCTGCAGCTTGAGAAGCCTGAATCTGATG AGACCTCAGAGAACTCTGAATCTGACGAGGCTTCTGAGCCCTCTTCTTGA |
Microexon DNA seq | GGAGAACATCAAAT |
Microexon Amino Acid seq | GRTSN |
Microexon-tag DNA Seq | GCTCGTGATGCACCGCCAGTTCCAGGTTTTAGGAAGTCCAAAGGAGGGAGAACATCAAATATACCAAGCAGCATTCTGCTGCAGATGCTTGGCAAAAGCCGGGTCACC |
Microexon-tag Amino Acid seq | ARDAPPVPGFRKSKGGRTSNIPSSILLQMLGKSRVT |
Transcript ID | Os01t0894700-01 |
Gene ID | Os.4690 |
Gene Name | NA |
Pfam domain motif | Trigger_N |
Motif E-value | 5.9e-11 |
Motif start | 89 |
Motif end | 211 |
Protein seq | >Os01t0894700-01 MASAATLPKLRFRPKCHGHFQAIYPVHVHIKNCNACKCQIPTHGLLVSSARSRPVLPVSAVGSGGGSSVAEDERKSGLSL QNAKTSVVSRDDETINVRVDLPGKATQKVFDEALTSLARDAPPVPGFRKSKGGRTSNIPSSILLQMLGKSRVTKFVLQEI LSITVGDFVKKENLKVNPEIKTTQSEEELESSFTPGSSFSFSVVLQLEKPESDETSENSESDEASEPSS* |
CDS seq | >Os01t0894700-01 ATGGCGTCAGCGGCGACCCTTCCGAAGCTTCGGTTCAGGCCAAAATGCCACGGCCACTTCCAGGCAATCTATCCGGTTCA TGTCCATATCAAGAACTGCAATGCTTGCAAGTGTCAGATTCCTACCCACGGGTTGCTTGTTTCCAGCGCGAGAAGTCGTC CTGTCCTGCCAGTGTCGGCAGTTGGATCAGGCGGGGGCTCATCGGTTGCTGAGGACGAGAGGAAGAGTGGCTTGTCGCTG CAGAACGCCAAGACATCCGTTGTGTCACGCGACGATGAAACGATCAATGTAAGAGTGGATTTGCCTGGAAAGGCGACACA GAAGGTGTTTGATGAAGCCTTGACAAGCTTGGCTCGTGATGCACCGCCAGTTCCAGGTTTTAGGAAGTCCAAAGGAGGGA GAACATCAAATATACCAAGCAGCATTCTGCTGCAGATGCTTGGCAAAAGCCGGGTCACCAAGTTCGTTCTTCAGGAAATA CTCAGCATCACTGTTGGTGATTTTGTAAAGAAGGAAAACCTGAAGGTGAACCCTGAAATCAAGACAACCCAGTCAGAAGA AGAGCTCGAGTCATCGTTTACGCCGGGTTCATCATTCAGTTTCAGTGTTGTTCTGCAGCTTGAGAAGCCTGAATCTGATG AGACCTCAGAGAACTCTGAATCTGACGAGGCTTCTGAGCCCTCTTCTTGA |