
Microexon ID | Hv_3H:561065753-561065766:+ |
Species | Hordeum Vulgare | Coordinates | 3H:561065753..561065766 |
Microexon Cluster ID | MEP37 |
Size | 14 |
Phase | 1 |
Pfam Domain Motif | Trigger_N |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 46,14,48 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | GYTSSTRCWGCACMRCCARTTCCWGGHTTYCGMAGRSWRAAAGGAGGRAAAACAYCARAKRTACCMARARRCWTYCTWYTRSARATKMTTGGWSMAKMMMRAGTBAMS |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | GGAAAACATCAAAT |
Microexon Amino Acid seq | GKTSN |
Microexon-tag DNA Seq | GCACGCGACGCGCCGCCGGTTCCAGGTTTCAGAAGGTCCAAGGGAGGGAAAACATCAAATATACCAAGCAGCATTCTCCTGTCAATGCTGGGCAAGAGCCGGGTCACA |
Microexon-tag Amino Acid Seq | ARDAPPVPGFRRSKGGKTSNIPSSILLSMLGKSRVT |
Microexon-tag spanning region | 561065585-561066268 |
Microexon-tag prediction score | 0.9304 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | HORVU.MOREX.r3.3HG0306130.1x |
Reference Transcript ID | HORVU.MOREX.r3.3HG0306130.1 |
Gene ID | HORVU.MOREX.r3.3HG0306130 |
Gene Name | NA |
Transcript ID | HORVU.MOREX.r3.3HG0306130.1 |
Protein ID | |
Gene ID | HORVU.MOREX.r3.3HG0306130 |
Gene Name | |
Pfam domain motif | Trigger_N |
Motif E-value | 6.90E-11 |
Motif start | 89 |
Motif end | 228 |
Protein seq | >HORVU.MOREX.r3.3HG0306130.1 MASAATFPKLRLGPRCHGYSQLQAADPVHIHMKIGGSCKCPMPAQGLLVSTGRSAARHAFLPVSAARSGRGAPVADAAEK TGLSLDSFKTSVVKRDDEKIHLRIELPGKATQKVFDEALTSLARDAPPVPGFRRSKGGKTSNIPSSILLSMLGKSRVTKF ILQEILSVTVGDFVKKENLKVNPEIATTQSEGDLESSFAPGSSFGFNVILELEKEADTDDAIDVEVSDSMDAPDVKQSDS EEPSEEEPPSSTP* |
CDS seq | >HORVU.MOREX.r3.3HG0306130.1 ATGGCTTCAGCCGCGACCTTTCCGAAGCTCCGGCTCGGTCCACGATGCCACGGCTACTCCCAGCTTCAGGCGGCCGACCC GGTCCACATCCACATGAAGATTGGCGGTTCCTGCAAGTGCCCCATGCCTGCCCAAGGGTTGCTTGTTTCTACCGGGAGAA GCGCCGCGAGGCACGCGTTCCTGCCGGTGTCGGCCGCCCGATCAGGTCGGGGCGCACCGGTCGCCGATGCCGCCGAGAAG ACCGGGCTGTCGTTGGACAGCTTCAAGACATCCGTTGTCAAACGCGACGACGAAAAGATCCATTTAAGAATCGAGTTGCC TGGGAAGGCAACACAGAAGGTGTTTGATGAGGCTCTGACGAGCCTGGCACGCGACGCGCCGCCGGTTCCAGGTTTCAGAA GGTCCAAGGGAGGGAAAACATCAAATATACCAAGCAGCATTCTCCTGTCAATGCTGGGCAAGAGCCGGGTCACAAAGTTC ATCCTTCAGGAAATACTCAGCGTCACCGTCGGAGACTTCGTCAAGAAGGAGAACCTCAAGGTGAACCCTGAAATCGCGAC GACACAATCGGAAGGCGACCTGGAGTCGTCGTTCGCGCCGGGCTCGTCGTTCGGGTTCAATGTGATCCTGGAGCTGGAGA AGGAGGCTGACACTGATGATGCTATTGATGTGGAGGTATCCGACTCCATGGATGCTCCCGACGTGAAGCAATCCGACTCC GAAGAGCCTTCCGAAGAGGAGCCCCCCTCCTCCACGCCCTGA |
Hv_3H:561065753-561065766:+ does not have available information here.