Microexon ID Zm_1:295631961-295631974:-
Species Zea mays
Coordinates 1:295631961..295631974
Microexon Cluster ID MEP36
Size 14
Phase 1
Pfam Domain Motif EFP_N
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) 15,31,14,48
Microexon location in the Microexon-tag 3
Microexon-tag DNA Seq KTYYGCGGCTCYGATGTGARRCYWGGRAAYGTCATTGAAARAAAAGGAMRBATTTAYSAGGTKRTAAARGCASAACAYWCWMMTCAAGGAAGAGGAGGAGCYAYWATA
Logo of Microexon-tag DNA Seq NT60 Logo
Alignment of exons MSA
Microexon DNA seq GCCACATTTATCAG
Microexon Amino Acid seq GHIYQ
Microexon-tag DNA Seq ATGCTCGGCTCCGACGTGAAACTTGGAAATGTAATACAAAGAAGAGGCCACATTTATCAGGTAATAAAAGCACAACATTCACATCAAGGAAGAGGAGGGGCCACAATA
Microexon-tag Amino Acid Seq MLGSDVKLGNVIQRRGHIYQVIKAQHSHQGRGGATI
Microexon-tag spanning region295631798-295632610
Microexon-tag prediction score0.9634
Overlapped with the annotated transcript (%) 74.07
New Transcript ID Zm00001d034524_T001x
Reference Transcript ID Zm00001d034524_T001
Gene ID Zm00001d034524
Gene Name NA
Transcript ID Zm00001d034524_T001
Protein ID NA
Gene ID Zm00001d034524
Gene Name NA
Pfam domain motif NA
Motif E-value NA
Motif start NA
Motif end NA
Protein seq
CDS seq
Microexon DNA seq GCCACATTTATCAG
Microexon Amino Acid seq GHIYQ
Microexon-tag DNA Seq ATGCTCGGCTCCGACGTGAAACTTGGAAATGTAATACAAAGAAGAGGCCACATTTATCAGGTAATAAAAGCACAACATTCACATCAAGGAAGAGGAGGGGCCACAATA
Microexon-tag Amino Acid seq MLGSDVKLGNVIQRRGHIYQVIKAQHSHQGRGGATI
Transcript ID Zm.5507.1
Gene ID Zm.5507
Gene Name NA
Pfam domain motif EFP_N
Motif E-value 1.3e-16
Motif start 66
Motif end 120
Protein seq >Zm.5507.1
MQILGRKVLEVSRRLPLFYAAHSGRAHAIATLAGAAARWAPPATSGSLATAPWAATQRRGAKMLGSDVKLGNVIQRRGHI
YQVIKAQHSHQGRGGATIQVELRDVDTGNKITERFRTDEALERVFVEEKSFTYLYQEGDTVTLMEPETFEQLEVSKELFG
KAAAYLKDEMKVNLQYFDGRPMSGTVPQRVTCTVVEAQPNTKGLTAQPQYKRVLLDNGLTVLAPPFIEAGENIVISTADD
SYMTRA*
CDS seq >Zm.5507.1
ATGCAGATCCTCGGGCGGAAGGTTCTGGAGGTTTCCCGCCGCCTACCTCTCTTCTACGCTGCGCACAGCGGCCGCGCCCA
TGCGATCGCCACGCTTGCGGGCGCCGCCGCGCGATGGGCTCCGCCCGCTACCTCGGGCTCGCTTGCCACCGCGCCGTGGG
CTGCCACCCAGCGCCGCGGCGCCAAGATGCTCGGCTCCGACGTGAAACTTGGAAATGTAATACAAAGAAGAGGCCACATT
TATCAGGTAATAAAAGCACAACATTCACATCAAGGAAGAGGAGGGGCCACAATACAGGTCGAACTGAGGGATGTTGACAC
TGGAAACAAAATAACAGAAAGATTTCGTACTGATGAGGCCCTTGAGAGAGTTTTTGTTGAGGAGAAGTCATTCACATATC
TGTATCAGGAAGGAGATACTGTGACTCTTATGGAGCCTGAAACGTTTGAGCAACTTGAAGTTTCGAAGGAACTGTTTGGC
AAAGCTGCTGCATACCTAAAAGATGAAATGAAAGTGAATCTACAATACTTTGATGGCCGGCCAATGTCTGGGACAGTTCC
TCAACGAGTGACTTGCACTGTTGTTGAAGCACAACCAAATACAAAAGGGCTAACTGCTCAACCACAGTATAAAAGGGTCT
TGCTGGATAATGGTCTTACAGTGCTTGCACCACCTTTTATTGAAGCGGGTGAGAATATTGTAATCAGTACAGCCGATGAT
TCTTATATGACGAGAGCGTAA