
Microexon ID | Zm_1:295631961-295631974:- |
Species | Zea mays | Coordinates | 1:295631961..295631974 |
Microexon Cluster ID | MEP36 |
Size | 14 |
Phase | 1 |
Pfam Domain Motif | EFP_N |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 15,31,14,48 |
Microexon location in the Microexon-tag | 3 |
Microexon-tag DNA Seq | KTYYGCGGCTCYGATGTGARRCYWGGRAAYGTCATTGAAARAAAAGGAMRBATTTAYSAGGTKRTAAARGCASAACAYWCWMMTCAAGGAAGAGGAGGAGCYAYWATA |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | GCCACATTTATCAG |
Microexon Amino Acid seq | GHIYQ |
Microexon-tag DNA Seq | ATGCTCGGCTCCGACGTGAAACTTGGAAATGTAATACAAAGAAGAGGCCACATTTATCAGGTAATAAAAGCACAACATTCACATCAAGGAAGAGGAGGGGCCACAATA |
Microexon-tag Amino Acid Seq | MLGSDVKLGNVIQRRGHIYQVIKAQHSHQGRGGATI |
Microexon-tag spanning region | 295631798-295632610 |
Microexon-tag prediction score | 0.9634 |
Overlapped with the annotated transcript (%) | 74.07 |
New Transcript ID | Zm00001d034524_T001x |
Reference Transcript ID | Zm00001d034524_T001 |
Gene ID | Zm00001d034524 |
Gene Name | NA |
Transcript ID | Zm00001d034524_T001 |
Protein ID | NA |
Gene ID | Zm00001d034524 |
Gene Name | NA |
Pfam domain motif | NA |
Motif E-value | NA |
Motif start | NA |
Motif end | NA |
Protein seq | |
CDS seq |
Microexon DNA seq | GCCACATTTATCAG |
Microexon Amino Acid seq | GHIYQ |
Microexon-tag DNA Seq | ATGCTCGGCTCCGACGTGAAACTTGGAAATGTAATACAAAGAAGAGGCCACATTTATCAGGTAATAAAAGCACAACATTCACATCAAGGAAGAGGAGGGGCCACAATA |
Microexon-tag Amino Acid seq | MLGSDVKLGNVIQRRGHIYQVIKAQHSHQGRGGATI |
Transcript ID | Zm.5507.1 |
Gene ID | Zm.5507 |
Gene Name | NA |
Pfam domain motif | EFP_N |
Motif E-value | 1.3e-16 |
Motif start | 66 |
Motif end | 120 |
Protein seq | >Zm.5507.1 MQILGRKVLEVSRRLPLFYAAHSGRAHAIATLAGAAARWAPPATSGSLATAPWAATQRRGAKMLGSDVKLGNVIQRRGHI YQVIKAQHSHQGRGGATIQVELRDVDTGNKITERFRTDEALERVFVEEKSFTYLYQEGDTVTLMEPETFEQLEVSKELFG KAAAYLKDEMKVNLQYFDGRPMSGTVPQRVTCTVVEAQPNTKGLTAQPQYKRVLLDNGLTVLAPPFIEAGENIVISTADD SYMTRA* |
CDS seq | >Zm.5507.1 ATGCAGATCCTCGGGCGGAAGGTTCTGGAGGTTTCCCGCCGCCTACCTCTCTTCTACGCTGCGCACAGCGGCCGCGCCCA TGCGATCGCCACGCTTGCGGGCGCCGCCGCGCGATGGGCTCCGCCCGCTACCTCGGGCTCGCTTGCCACCGCGCCGTGGG CTGCCACCCAGCGCCGCGGCGCCAAGATGCTCGGCTCCGACGTGAAACTTGGAAATGTAATACAAAGAAGAGGCCACATT TATCAGGTAATAAAAGCACAACATTCACATCAAGGAAGAGGAGGGGCCACAATACAGGTCGAACTGAGGGATGTTGACAC TGGAAACAAAATAACAGAAAGATTTCGTACTGATGAGGCCCTTGAGAGAGTTTTTGTTGAGGAGAAGTCATTCACATATC TGTATCAGGAAGGAGATACTGTGACTCTTATGGAGCCTGAAACGTTTGAGCAACTTGAAGTTTCGAAGGAACTGTTTGGC AAAGCTGCTGCATACCTAAAAGATGAAATGAAAGTGAATCTACAATACTTTGATGGCCGGCCAATGTCTGGGACAGTTCC TCAACGAGTGACTTGCACTGTTGTTGAAGCACAACCAAATACAAAAGGGCTAACTGCTCAACCACAGTATAAAAGGGTCT TGCTGGATAATGGTCTTACAGTGCTTGCACCACCTTTTATTGAAGCGGGTGAGAATATTGTAATCAGTACAGCCGATGAT TCTTATATGACGAGAGCGTAA |