
Microexon ID | Sm_GL377597:713662-713675:+ |
Species | Selaginella moellendorffii | Coordinates | GL377597:713662..713675 |
Microexon Cluster ID | MEP36 |
Size | 14 |
Phase | 1 |
Pfam Domain Motif | EFP_N |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 15,31,14,48 |
Microexon location in the Microexon-tag | 3 |
Microexon-tag DNA Seq | KTYYGCGGCTCYGATGTGARRCYWGGRAAYGTCATTGAAARAAAAGGAMRBATTTAYSAGGTKRTAAARGCASAACAYWCWMMTCAAGGAAGAGGAGGAGCYAYWATA |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | GGCGCCTTGTGCAG |
Microexon Amino Acid seq | GRLVQ |
Microexon-tag DNA Seq | TTCCCCGACACAGAGGTGAGAGTCGGGCAGATTTTGGAGCGCAAAGGGCGCCTTGTGCAGGTTATAAAGATCGCTCATGCTCATGGAGGCCGTGGTGGAGCTACAATT |
Microexon-tag Amino Acid Seq | FPDTEVRVGQILERKGRLVQVIKIAHAHGGRGGATI |
Microexon-tag spanning region | 712235-713788 |
Microexon-tag prediction score | 0.8462 |
Overlapped with the annotated transcript (%) | 12.72 |
New Transcript ID | EFJ21954x |
Reference Transcript ID | EFJ21954 |
Gene ID | SELMODRAFT_443353 |
Gene Name | NA |
Transcript ID | EFJ21954 |
Protein ID | EFJ21954 |
Gene ID | SELMODRAFT_443353 |
Gene Name | NA |
Pfam domain motif | EFP_N |
Motif E-value | 2.3e-10 |
Motif start | 382 |
Motif end | 438 |
Protein seq | >EFJ21954 MSSDRRRSSYIWWYDKSLNFFRDRSAKQELTTRSSKTLTDLDCCSVCQEQFTLPCQANCTHWFCGECILRVWEYGSALLP CKCPICRQPITHLWPSEFSTTEEATNFMPLLTDIATYNLNFDSRVITILRLKFPDTEVRCLHVLHFLFLLVLALYVVCTL NLILEGKLAIRTVKKEFMELNAAHRWVAGFNVAEGKSGLRVLCSTRSLPRLPIMRGRKLGREAILTVQSLKRAKGVREEM EQVLKSQVSRLLKTDMLEVLRELHRQNDCVLAYEELQGEMLPDGLVYTELMTAYLRCERPNDAIDTFQEMKQLGLTVELK TFTTLAKWLEKKGLGEEASAGMQRSRRVAQQGFKALSGFRVFKEDSSSLWHWQQRRGLKIDGSEVRVGQILERKGRLVQV IKIAHAHGGRGGATIPIEYKDLISGIKSTERLRTSESVERVAVDSKTFTYLYDEGQMAILMDPKTFDQVTVDKELFGTGA SYLSDGMSVTVQMHEGKPVTASVPVSLTCKVVEAEPFMKGQTQAAAYKHITLENGKIIMAPCFIVSGDQIVVNTVEDTYV TRASKE* |
CDS seq | >EFJ21954 ATGAGCAGCGATCGTCGACGCTCTTCTTACATCTGGTGGTACGATAAGAGCTTGAATTTCTTCCGTGACCGCAGCGCCAA GCAAGAACTGACGACTCGATCATCCAAAACTCTCACGGACTTGGATTGCTGCTCGGTTTGCCAGGAGCAATTCACTCTTC CTTGTCAAGCGAATTGCACACACTGGTTCTGTGGAGAATGTATTCTCAGAGTGTGGGAGTATGGATCAGCGTTACTCCCT TGTAAATGTCCCATTTGTCGACAACCAATCACTCACTTGTGGCCTAGCGAATTTTCTACGACTGAAGAGGCTACGAATTT CATGCCACTGCTGACTGACATCGCGACTTACAATCTTAACTTCGATAGCCGAGTGATCACCATTTTGCGACTGAAATTCC CCGACACAGAGGTTCGGTGTCTCCACGTTCTTCACTTCCTTTTTCTCCTGGTTCTCGCTCTTTACGTCGTTTGCACGCTC AATCTCATACTCGAAGGTAAGCTGGCTATTCGGACAGTGAAGAAAGAGTTCATGGAACTTAATGCGGCACACAGATGGGT CGCGGGTTTCAACGTTGCCGAGGGAAAATCCGGACTGCGTGTGCTGTGTTCTACCAGGAGTCTTCCCAGACTACCGATAA TGAGGGGCCGGAAGCTGGGAAGAGAGGCAATTCTCACTGTACAGAGCTTGAAGAGAGCCAAAGGTGTCCGGGAGGAGATG GAACAAGTGCTCAAGTCTCAGGTGTCCCGGCTTCTCAAGACTGACATGCTCGAAGTTCTGCGGGAGCTACACAGGCAAAA CGACTGTGTTCTAGCTTACGAGGAGCTCCAGGGAGAAATGCTGCCGGATGGGCTGGTTTACACTGAGCTCATGACGGCTT ACTTGAGATGCGAGAGACCAAACGATGCGATCGACACATTCCAGGAGATGAAGCAACTGGGGCTCACGGTGGAGCTCAAA ACTTTCACCACTCTGGCCAAATGGTTGGAGAAAAAAGGCCTTGGCGAGGAAGCTAGCGCTGGGATGCAGCGCTCGAGGCG CGTTGCGCAGCAGGGATTCAAGGCGCTGTCTGGATTTCGAGTCTTTAAGGAGGATTCTTCGTCGTTGTGGCATTGGCAGC AGCGCCGCGGATTGAAGATCGATGGATCGGAGGTGAGAGTCGGGCAGATTTTGGAGCGCAAAGGGCGCCTTGTGCAGGTT ATAAAGATCGCTCATGCTCATGGAGGCCGTGGTGGAGCTACAATTCCGATCGAGTACAAGGATCTGATCAGCGGGATCAA GTCAACTGAGCGTTTGCGAACCTCAGAATCGGTGGAAAGAGTGGCTGTCGATTCGAAAACCTTTACATATCTGTACGACG AGGGACAAATGGCGATTTTGATGGATCCAAAAACGTTCGACCAGGTTACAGTGGACAAAGAGCTCTTTGGAACTGGAGCT TCATATCTTTCAGATGGAATGTCTGTGACGGTGCAAATGCACGAGGGTAAACCAGTGACTGCTTCGGTACCAGTTTCTCT GACATGCAAAGTGGTCGAAGCTGAGCCTTTTATGAAAGGCCAGACCCAAGCTGCAGCGTACAAGCACATCACGCTAGAAA ATGGCAAAATAATCATGGCCCCTTGCTTCATCGTTAGTGGAGACCAGATAGTTGTCAACACAGTGGAAGACACTTACGTG ACAAGAGCTTCCAAAGAATAA |
Microexon DNA seq | GGCGCCTTGTGCAG |
Microexon Amino Acid seq | GRLVQ |
Microexon-tag DNA Seq | ATCGATGGATCGGAGGTGAGAGTCGGGCAGATTTTGGAGCGCAAAGGGCGCCTTGTGCAGGTTATAAAGATCGCTCATGCTCATGGAGGCCGTGGTGGAGCTACAATT |
Microexon-tag Amino Acid seq | IDGSEVRVGQILERKGRLVQVIKIAHAHGGRGGATI |
Transcript ID | EFJ21954 |
Gene ID | Sm.15753 |
Gene Name | NA |
Pfam domain motif | EFP_N |
Motif E-value | 2.3e-10 |
Motif start | 382 |
Motif end | 438 |
Protein seq | >EFJ21954 MSSDRRRSSYIWWYDKSLNFFRDRSAKQELTTRSSKTLTDLDCCSVCQEQFTLPCQANCTHWFCGECILRVWEYGSALLP CKCPICRQPITHLWPSEFSTTEEATNFMPLLTDIATYNLNFDSRVITILRLKFPDTEVRCLHVLHFLFLLVLALYVVCTL NLILEGKLAIRTVKKEFMELNAAHRWVAGFNVAEGKSGLRVLCSTRSLPRLPIMRGRKLGREAILTVQSLKRAKGVREEM EQVLKSQVSRLLKTDMLEVLRELHRQNDCVLAYEELQGEMLPDGLVYTELMTAYLRCERPNDAIDTFQEMKQLGLTVELK TFTTLAKWLEKKGLGEEASAGMQRSRRVAQQGFKALSGFRVFKEDSSSLWHWQQRRGLKIDGSEVRVGQILERKGRLVQV IKIAHAHGGRGGATIPIEYKDLISGIKSTERLRTSESVERVAVDSKTFTYLYDEGQMAILMDPKTFDQVTVDKELFGTGA SYLSDGMSVTVQMHEGKPVTASVPVSLTCKVVEAEPFMKGQTQAAAYKHITLENGKIIMAPCFIVSGDQIVVNTVEDTYV TRASKE* |
CDS seq | >EFJ21954 ATGAGCAGCGATCGTCGACGCTCTTCTTACATCTGGTGGTACGATAAGAGCTTGAATTTCTTCCGTGACCGCAGCGCCAA GCAAGAACTGACGACTCGATCATCCAAAACTCTCACGGACTTGGATTGCTGCTCGGTTTGCCAGGAGCAATTCACTCTTC CTTGTCAAGCGAATTGCACACACTGGTTCTGTGGAGAATGTATTCTCAGAGTGTGGGAGTATGGATCAGCGTTACTCCCT TGTAAATGTCCCATTTGTCGACAACCAATCACTCACTTGTGGCCTAGCGAATTTTCTACGACTGAAGAGGCTACGAATTT CATGCCACTGCTGACTGACATCGCGACTTACAATCTTAACTTCGATAGCCGAGTGATCACCATTTTGCGACTGAAATTCC CCGACACAGAGGTTCGGTGTCTCCACGTTCTTCACTTCCTTTTTCTCCTGGTTCTCGCTCTTTACGTCGTTTGCACGCTC AATCTCATACTCGAAGGTAAGCTGGCTATTCGGACAGTGAAGAAAGAGTTCATGGAACTTAATGCGGCACACAGATGGGT CGCGGGTTTCAACGTTGCCGAGGGAAAATCCGGACTGCGTGTGCTGTGTTCTACCAGGAGTCTTCCCAGACTACCGATAA TGAGGGGCCGGAAGCTGGGAAGAGAGGCAATTCTCACTGTACAGAGCTTGAAGAGAGCCAAAGGTGTCCGGGAGGAGATG GAACAAGTGCTCAAGTCTCAGGTGTCCCGGCTTCTCAAGACTGACATGCTCGAAGTTCTGCGGGAGCTACACAGGCAAAA CGACTGTGTTCTAGCTTACGAGGAGCTCCAGGGAGAAATGCTGCCGGATGGGCTGGTTTACACTGAGCTCATGACGGCTT ACTTGAGATGCGAGAGACCAAACGATGCGATCGACACATTCCAGGAGATGAAGCAACTGGGGCTCACGGTGGAGCTCAAA ACTTTCACCACTCTGGCCAAATGGTTGGAGAAAAAAGGCCTTGGCGAGGAAGCTAGCGCTGGGATGCAGCGCTCGAGGCG CGTTGCGCAGCAGGGATTCAAGGCGCTGTCTGGATTTCGAGTCTTTAAGGAGGATTCTTCGTCGTTGTGGCATTGGCAGC AGCGCCGCGGATTGAAGATCGATGGATCGGAGGTGAGAGTCGGGCAGATTTTGGAGCGCAAAGGGCGCCTTGTGCAGGTT ATAAAGATCGCTCATGCTCATGGAGGCCGTGGTGGAGCTACAATTCCGATCGAGTACAAGGATCTGATCAGCGGGATCAA GTCAACTGAGCGTTTGCGAACCTCAGAATCGGTGGAAAGAGTGGCTGTCGATTCGAAAACCTTTACATATCTGTACGACG AGGGACAAATGGCGATTTTGATGGATCCAAAAACGTTCGACCAGGTTACAGTGGACAAAGAGCTCTTTGGAACTGGAGCT TCATATCTTTCAGATGGAATGTCTGTGACGGTGCAAATGCACGAGGGTAAACCAGTGACTGCTTCGGTACCAGTTTCTCT GACATGCAAAGTGGTCGAAGCTGAGCCTTTTATGAAAGGCCAGACCCAAGCTGCAGCGTACAAGCACATCACGCTAGAAA ATGGCAAAATAATCATGGCCCCTTGCTTCATCGTTAGTGGAGACCAGATAGTTGTCAACACAGTGGAAGACACTTACGTG ACAAGAGCTTCCAAAGAATAA |