Microexon ID Gm_4:44252406-44252419:-
Species Glycine max
Coordinates 4:44252406..44252419
Microexon Cluster ID MEP36
Size 14
Phase 1
Pfam Domain Motif EFP_N
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) 15,31,14,48
Microexon location in the Microexon-tag 3
Microexon-tag DNA Seq KTYYGCGGCTCYGATGTGARRCYWGGRAAYGTCATTGAAARAAAAGGAMRBATTTAYSAGGTKRTAAARGCASAACAYWCWMMTCAAGGAAGAGGAGGAGCYAYWATA
Logo of Microexon-tag DNA Seq NT60 Logo
Alignment of exons MSA
Microexon DNA seq GACGCGCTCACGAG
Microexon Amino Acid seq GRAHE
Microexon-tag DNA Seq CTCTCTGGATCTGATGTTCGAGTCGGGAATCTCATTGGAAACCGAGGACGCGCTCACGAGGTTCTCAAACTGTATCGCCCTCTTGAAGGAACGGGCAAAGCCACTCTT
Microexon-tag Amino Acid Seq LSGSDVRVGNLIGNRGRAHEVLKLYRPLEGTGKATL
Microexon-tag spanning region44252261-44252721
Microexon-tag prediction score0.8532
Overlapped with the annotated transcript (%) 100
New Transcript ID KRH63460x
Reference Transcript ID KRH63460
Gene ID GLYMA_04G178200
Gene Name NA
Transcript ID KRH63460
Protein ID KRH63460
Gene ID GLYMA_04G178200
Gene Name NA
Pfam domain motif Unknown
Motif E-value NA
Motif start NA
Motif end NA
Protein seq >KRH63460
MQSMSLTLSKRLSNSKPLFRISSNLVAHASSATTSPPPPSPPVPSPSALNSLLTAPWSATQSRGITLSGSDVRVGNLIGN
RGRAHEVLKLYRPLEGTGKATLEVPPQSVAGYATVATTEDGAERKERNSGLSKATKTKREQLLKATAVASLLLIYPNTYS
LLFANFFVFWHLYAGIGEILADYVHHEMTREFVMISLRLFLIMALKDVCLNFVFV*
CDS seq >KRH63460
ATGCAATCTATGTCCCTGACGCTGAGCAAGAGGCTCTCCAATTCAAAGCCTCTCTTCAGAATCTCTTCCAACCTCGTCGC
TCACGCATCCTCCGCCACAACCTCTCCGCCGCCACCTTCGCCGCCAGTCCCCTCTCCATCCGCCCTCAACAGCCTCCTCA
CCGCTCCGTGGTCCGCCACTCAGTCACGCGGAATCACGCTCTCTGGATCTGATGTTCGAGTCGGGAATCTCATTGGAAAC
CGAGGACGCGCTCACGAGGTTCTCAAACTGTATCGCCCTCTTGAAGGAACGGGCAAAGCCACTCTTGAGGTTCCGCCTCA
AAGTGTAGCTGGTTATGCCACAGTTGCTACTACAGAGGATGGCGCCGAAAGGAAGGAACGAAACAGTGGATTGAGTAAGG
CAACGAAGACAAAGAGAGAGCAGCTCCTAAAAGCTACTGCAGTTGCCTCTCTTCTTCTAATATACCCGAACACTTATTCA
TTGCTCTTCGCAAATTTCTTTGTGTTCTGGCACTTATATGCAGGGATCGGAGAGATTTTGGCAGACTATGTTCACCATGA
AATGACCAGAGAATTTGTCATGATTTCTCTCAGGTTGTTCTTGATAATGGCATTGAAGGATGTATGCTTAAATTTTGTAT
TTGTATAA
Microexon DNA seq GACGCGCTCACGAG
Microexon Amino Acid seq GRAHE
Microexon-tag DNA Seq CTCTCTGGATCTGATGTTCGAGTCGGGAATCTCATTGGAAACCGAGGACGCGCTCACGAGGTTCTCAAACTGTATCGCCCTCTTGAAGGAACGGGCAAAGCCACTCTT
Microexon-tag Amino Acid seq LSGSDVRVGNLIGNRGRAHEVLKLYRPLEGTGKATL
Transcript ID Gm.39043.3
Gene ID Gm.39043
Gene Name NA
Pfam domain motif Unknown
Motif E-value NA
Motif start NA
Motif end NA
Protein seq >Gm.39043.3
MQSMSLTLSKRLSNSKPLFRISSNLVAHASSATTSPPPPSPPVPSPSALNSLLTAPWSATQSRGITLSGSDVRVGNLIGN
RGRAHEVLKLYRPLEGTGKATLEVYSRFSLSLSYIALLEY*
CDS seq >Gm.39043.3
ATGCAATCTATGTCCCTGACGCTGAGCAAGAGGCTCTCCAATTCAAAGCCTCTCTTCAGAATCTCTTCCAACCTCGTCGC
TCACGCATCCTCCGCCACAACCTCTCCGCCGCCACCTTCGCCGCCAGTCCCCTCTCCATCCGCCCTCAACAGCCTCCTCA
CCGCTCCGTGGTCCGCCACTCAGTCACGCGGAATCACGCTCTCTGGATCTGATGTTCGAGTCGGGAATCTCATTGGAAAC
CGAGGACGCGCTCACGAGGTTCTCAAACTGTATCGCCCTCTTGAAGGAACGGGCAAAGCCACTCTTGAGGTTTATTCAAG
ATTCTCTCTCTCACTCTCTTATATAGCTCTGCTTGAATACTGA