
Microexon ID | Zm_5:132599863-132599876:+ |
Species | Zea mays | Coordinates | 5:132599863..132599876 |
Microexon Cluster ID | MEP35 |
Size | 14 |
Phase | 0 |
Pfam Domain Motif | Tudor-knot |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 48,14,46 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | AARGCTGARHTYCRRAAGAAKGARTGGARATAYTTYGTYCATTAYCTTGGTTGGAAYAAAAATTGGGATGAATGGGTWGGYRYKGAYCGYYTGWTGAARYWYACTGAR |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | GGTTGGAATAAGAA |
Microexon Amino Acid seq | GWNKN |
Microexon-tag DNA Seq | AGGATCGAAAACCATGAAGATGAATGGCGCTACTTTGTCCATTATCTCGGTTGGAATAAGAACTGGGATGAATGGGTTGCAAATGACCGCTTGTTGGAATTGACGGAG |
Microexon-tag Amino Acid Seq | RIENHEDEWRYFVHYLGWNKNWDEWVANDRLLELTE |
Microexon-tag spanning region | 132599655-132602484 |
Microexon-tag prediction score | 0.9117 |
Overlapped with the annotated transcript (%) | 57.41 |
New Transcript ID | Zm00001d015932_T002x |
Reference Transcript ID | Zm00001d015932_T002 |
Gene ID | Zm00001d015932 |
Gene Name | NA |
Transcript ID | Zm00001d015932_T001 |
Protein ID | Zm00001d015932_P001 |
Gene ID | Zm00001d015932 |
Gene Name | NA |
Pfam domain motif | Unknown |
Motif E-value | NA |
Motif start | NA |
Motif end | NA |
Protein seq | >Zm00001d015932_P001 MGSSSNTNTSGGASDKEEKKKEDKIKGKDSSGPSFKENERVLAYHGPLLYEAKVQRIENHEDEWRYFVHYLVSLRVGIRT DAKADKDDTKSLISVKGKKRKSQLGTEIQDKEKRSSHSLLVLQFPLPLKKQLVDDWEFVTQMGKLVKLPRSPTVDDILKK YLEHRAKKDGKINDSYAEILKGLRCYFDKALPAMLLYKKERDQYAEEVKGDVSPSTVYGAEHLLRLFVKLPELLASVNME EDALNKLQLKLLDVLKFLQKNQITFFTSAYDGSCKGADEDKTK* |
CDS seq | >Zm00001d015932_T001 ATGGGCAGCTCCTCGAATACCAACACGAGCGGCGGGGCCAGCGACAAGGAGGAGAAGAAGAAGGAGGACAAGATCAAAGG CAAGGACTCGTCGGGGCCATCCTTCAAGGAGAACGAAAGGGTCCTCGCCTACCACGGCCCCCTCCTCTACGAGGCCAAGG TTCAAAGGATCGAAAACCATGAAGATGAATGGCGCTACTTTGTCCATTATCTCGTAAGTCTTAGGGTTGGAATAAGAACG GATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCATTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGA GATTCAGGACAAGGAAAAAAGATCATCACATAGTCTACTAGTGTTGCAGTTTCCTTTGCCACTGAAGAAGCAACTTGTGG ATGATTGGGAGTTTGTTACGCAGATGGGTAAGCTTGTGAAGCTACCACGATCACCTACTGTTGATGATATTCTAAAGAAG TACTTGGAACACCGGGCAAAGAAGGATGGCAAGATAAATGACTCCTATGCTGAGATTCTGAAAGGATTACGCTGCTACTT TGATAAAGCATTGCCTGCAATGCTTTTATATAAGAAAGAGCGAGATCAGTATGCTGAAGAAGTTAAAGGTGATGTCTCAC CATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTGTAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAG GAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAAGTTTCTTCAGAAGAATCAGATCACCTTCTTTAC CTCTGCGTACGATGGTTCTTGTAAAGGTGCAGATGAGGATAAAACCAAATGA |
Microexon DNA seq | GGTTGGAATAAGAA |
Microexon Amino Acid seq | RVGIRT |
Microexon-tag DNA Seq | CATGAAGATGAATGGCGCTACTTTGTCCATTATCTCGTAAGTCTTAGGGTTGGAATAAGAACGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCATTTCAGTG |
Microexon-tag Amino Acid seq | HEDEWRYFVHYLVSLRVGIRTDAKADKDDTKSLISV |
Transcript ID | Zm00001d015932_T001 |
Gene ID | Zm.23979 |
Gene Name | NA |
Pfam domain motif | Unknown |
Motif E-value | NA |
Motif start | NA |
Motif end | NA |
Protein seq | >Zm00001d015932_T001 MGSSSNTNTSGGASDKEEKKKEDKIKGKDSSGPSFKENERVLAYHGPLLYEAKVQRIENHEDEWRYFVHYLVSLRVGIRT DAKADKDDTKSLISVKGKKRKSQLGTEIQDKEKRSSHSLLVLQFPLPLKKQLVDDWEFVTQMGKLVKLPRSPTVDDILKK YLEHRAKKDGKINDSYAEILKGLRCYFDKALPAMLLYKKERDQYAEEVKGDVSPSTVYGAEHLLRLFVKLPELLASVNME EDALNKLQLKLLDVLKFLQKNQITFFTSAYDGSCKGADEDKTK* |
CDS seq | >Zm00001d015932_T001 ATGGGCAGCTCCTCGAATACCAACACGAGCGGCGGGGCCAGCGACAAGGAGGAGAAGAAGAAGGAGGACAAGATCAAAGG CAAGGACTCGTCGGGGCCATCCTTCAAGGAGAACGAAAGGGTCCTCGCCTACCACGGCCCCCTCCTCTACGAGGCCAAGG TTCAAAGGATCGAAAACCATGAAGATGAATGGCGCTACTTTGTCCATTATCTCGTAAGTCTTAGGGTTGGAATAAGAACG GATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCATTTCAGTGAAGGGGAAGAAACGTAAAAGTCAGCTTGGGACTGA GATTCAGGACAAGGAAAAAAGATCATCACATAGTCTACTAGTGTTGCAGTTTCCTTTGCCACTGAAGAAGCAACTTGTGG ATGATTGGGAGTTTGTTACGCAGATGGGTAAGCTTGTGAAGCTACCACGATCACCTACTGTTGATGATATTCTAAAGAAG TACTTGGAACACCGGGCAAAGAAGGATGGCAAGATAAATGACTCCTATGCTGAGATTCTGAAAGGATTACGCTGCTACTT TGATAAAGCATTGCCTGCAATGCTTTTATATAAGAAAGAGCGAGATCAGTATGCTGAAGAAGTTAAAGGTGATGTCTCAC CATCAACTGTATATGGAGCTGAGCATCTATTGCGCCTTTTTGTAAAATTGCCAGAGCTACTTGCTTCTGTCAATATGGAG GAAGATGCGTTGAACAAGCTACAGCTGAAACTGCTGGACGTTCTCAAGTTTCTTCAGAAGAATCAGATCACCTTCTTTAC CTCTGCGTACGATGGTTCTTGTAAAGGTGCAGATGAGGATAAAACCAAATGA |