
Microexon ID | Sl_2:54495240-54495253:+ |
Species | Solanum Lycopersicum | Coordinates | 2:54495240..54495253 |
Microexon Cluster ID | MEP35 |
Size | 14 |
Phase | 0 |
Pfam Domain Motif | Tudor-knot |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 48,14,46 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | AARGCTGARHTYCRRAAGAAKGARTGGARATAYTTYGTYCATTAYCTTGGTTGGAAYAAAAATTGGGATGAATGGGTWGGYRYKGAYCGYYTGWTGAARYWYACTGAR |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | GGCTGGAACAAAAA |
Microexon Amino Acid seq | GWNKN |
Microexon-tag DNA Seq | AAAGCAGAGCTGCGGAAGAACGAATGGAGATACTTCGTTCATTACCTTGGCTGGAACAAAAATTGGGATGAATGGGTAGGAGCTGACCGCTTGATGAAGCACACAGAA |
Microexon-tag Amino Acid Seq | KAELRKNEWRYFVHYLGWNKNWDEWVGADRLMKHTE |
Microexon-tag spanning region | 54495005-54496548 |
Microexon-tag prediction score | 0.9839 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | Solyc02g092910.3.1x |
Reference Transcript ID | Solyc02g092910.3.1 |
Gene ID | Solyc02g092910.3 |
Gene Name | NA |
Transcript ID | Solyc02g092910.3.1 |
Protein ID | |
Gene ID | Solyc02g092910.3 |
Gene Name | |
Pfam domain motif | MSL3_chromo-like |
Motif E-value | 3.40E-15 |
Motif start | 27 |
Motif end | 93 |
Protein seq | >Solyc02g092910.3.1 MVNSKNNSSTDSENSSGDVPDSKPSLYFEGEKVLAYHGPRIYEAKVQKAELRKNEWRYFVHYLGWNKNWDEWVGADRLMK HTEDNVLKQQALDKKQGMEKSTKSGRSAPAKPKSSADVKLDKEETKSNVPKGKKRKTDSGAEKGNVSVEKLVKIQIPSTL KKQLVDDWEFIMHQNKLVKLPRSPTVDDILTKYLEYRSKKDGMMTDSVGEILNGIRCYFDKALPALLLYKKERQQYHEAV SDNVSPSSVYGAEHLLRLFVKLPELIAYAKIDEESLTKLQQKFLDFLKFLQKNQGTFFLSAYDGPKASEGNGKDKES* |
CDS seq | >Solyc02g092910.3.1 ATGGTTAACTCAAAAAACAACTCTTCTACCGACAGCGAAAATTCCTCCGGTGACGTTCCCGACTCTAAACCTAGTCTCTA CTTTGAAGGCGAGAAGGTTCTCGCTTATCATGGCCCTCGCATCTACGAAGCAAAGGTCCAAAAAGCAGAGCTGCGGAAGA ACGAATGGAGATACTTCGTTCATTACCTTGGCTGGAACAAAAATTGGGATGAATGGGTAGGAGCTGACCGCTTGATGAAG CACACAGAAGACAACGTCTTGAAGCAGCAGGCCCTGGACAAGAAGCAGGGCATGGAGAAAAGTACTAAATCTGGACGTTC AGCACCGGCAAAACCCAAAAGCTCAGCTGATGTTAAACTGGACAAGGAAGAAACTAAGAGCAATGTTCCAAAAGGGAAAA AGCGCAAAACTGACTCAGGCGCTGAGAAGGGCAATGTATCTGTAGAGAAACTTGTGAAGATTCAGATTCCATCTACTTTG AAGAAGCAACTAGTTGATGATTGGGAGTTCATCATGCACCAGAATAAGCTTGTGAAGCTCCCACGATCTCCTACTGTGGA TGATATATTGACCAAGTACCTTGAATACCGATCCAAAAAGGACGGGATGATGACTGATTCAGTTGGGGAGATACTGAATG GAATTCGATGCTATTTTGACAAAGCACTGCCTGCACTTTTATTGTACAAGAAGGAGCGCCAACAGTATCATGAAGCAGTT TCAGATAATGTCTCTCCATCTAGTGTATATGGTGCTGAACATCTATTGCGCCTTTTTGTAAAATTGCCCGAGTTGATTGC ATATGCAAAAATTGACGAGGAGTCGTTAACGAAGTTGCAACAGAAATTTCTAGACTTTCTCAAGTTTTTGCAGAAAAACC AGGGTACTTTCTTCCTATCTGCTTATGATGGTCCTAAAGCCTCTGAAGGAAATGGCAAGGATAAAGAAAGCTGA |
Sl_2:54495240-54495253:+ does not have available information here.