
Microexon ID | Sb_4:16491749-16491762:+ |
Species | Sorghum Bicolor | Coordinates | 4:16491749..16491762 |
Microexon Cluster ID | MEP35 |
Size | 14 |
Phase | 0 |
Pfam Domain Motif | Tudor-knot |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 48,14,46 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | AARGCTGARHTYCRRAAGAAKGARTGGARATAYTTYGTYCATTAYCTTGGTTGGAAYAAAAATTGGGATGAATGGGTWGGYRYKGAYCGYYTGWTGAARYWYACTGAR |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | GGTTGGAATAAGAA |
Microexon Amino Acid seq | GWNKN |
Microexon-tag DNA Seq | AGGATCGAAAATCATGAAGATGAATGGCGCTACTTTGTCCATTATCTCGGTTGGAATAAGAACTGGGATGAATGGGTTGCAAATGACCGCTTGTTGGCATTAACAGAG |
Microexon-tag Amino Acid Seq | RIENHEDEWRYFVHYLGWNKNWDEWVANDRLLALTE |
Microexon-tag spanning region | 16491449-16493784 |
Microexon-tag prediction score | 0.9048 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | OQU84821x |
Reference Transcript ID | OQU84821 |
Gene ID | SORBI_3004G129300 |
Gene Name | NA |
Transcript ID | OQU84821 |
Protein ID | |
Gene ID | SORBI_3004G129300 |
Gene Name | |
Pfam domain motif | MSL3_chromo-like |
Motif E-value | 2.80E-11 |
Motif start | 41 |
Motif end | 84 |
Protein seq | >OQU84821 MVTSSSSSQLPTVDSATSPTPASGSGSNGGHGAVGEVQRIENHEDEWRYFVHYLGWNKNWDEWVANDRLLALTEENMRKQ QELDKNQVVDKTMKSGRSTQHKPKGSNADAKADKDDTKSLMKGKKRKSQPGTEIQEKEKRSSQSLLVLQFPLTLKKQLVD DWEFVSQMGKFVKLPRSPTVDDILKKYLEHRTKKDGKINDSYAEILKGIRCYFDKALPAMLLYKKERDQYAEEVKGDVSP STVYGAEHLLRLFVKLPELLAFVNMEEDALNKLQMKLLDILKFIQKNQSTFFTTVYDDGRKSADGAKTK* |
CDS seq | >OQU84821 ATGGTGACCTCATCTAGCTCCTCCCAGCTCCCCACCGTGGATTCAGCGACCTCCCCAACTCCAGCGAGCGGATCTGGTAG CAACGGCGGTCATGGCGCTGTCGGCGAGGTTCAAAGGATCGAAAATCATGAAGATGAATGGCGCTACTTTGTCCATTATC TCGGTTGGAATAAGAACTGGGATGAATGGGTTGCAAATGACCGCTTGTTGGCATTAACAGAGGAAAACATGCGCAAACAA CAAGAGCTTGACAAGAACCAGGTAGTTGACAAAACAATGAAGTCTGGACGGTCAACACAGCATAAACCAAAAGGCTCCAA TGCAGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCATGAAGGGGAAGAAACGTAAAAGTCAGCCTGGGACTGAGA TTCAGGAAAAGGAAAAAAGATCATCACAGAGTCTACTAGTGTTGCAGTTTCCTTTGACACTGAAGAAGCAACTTGTGGAT GATTGGGAGTTTGTCTCGCAGATGGGTAAGTTTGTGAAGCTACCACGATCACCTACTGTTGATGATATTCTAAAGAAGTA TTTGGAGCACCGGACAAAGAAGGATGGCAAGATAAATGACTCCTATGCTGAGATTCTGAAAGGAATACGCTGCTACTTTG ATAAAGCATTGCCTGCAATGCTTTTATATAAGAAAGAGCGAGATCAGTATGCTGAAGAAGTTAAAGGTGATGTCTCACCG TCAACTGTATATGGAGCTGAGCACCTATTGCGCCTTTTTGTGAAATTGCCAGAGTTACTTGCTTTTGTCAATATGGAGGA AGATGCGCTGAACAAGCTACAGATGAAATTGCTGGACATTCTCAAGTTTATTCAGAAGAATCAGAGCACCTTCTTTACCA CCGTGTACGATGATGGTCGTAAAAGTGCAGATGGGGCTAAAACCAAATGA |
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