
Microexon ID | Zm_2:45884860-45884872:- |
Species | Zea mays | Coordinates | 2:45884860..45884872 |
Microexon Cluster ID | MEP33 |
Size | 13 |
Phase | 2 |
Pfam Domain Motif | Unknown |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 47,13,48 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | GAVTTYYTRTCARTHTCRGARTTYCTWGTKGARRTWTCTGATGAYYTGTWTGAYTAYGAGGATGAYGTKTTRRAGAAYAAYTTCAAYATTYTGCGCATGTTTGTYRRA |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | GTATGATTATGAG |
Microexon Amino Acid seq | LYDYE |
Microexon-tag DNA Seq | GACTTCTTGTCAGTTTCAGAATTTTTGGTTGAGATATCTGATGACCTGTATGATTATGAGGATGACGTTATGAACAATACGTTCAATATCCTTCGCATGTTTGCTGCA |
Microexon-tag Amino Acid Seq | DFLSVSEFLVEISDDLYDYEDDVMNNTFNILRMFAA |
Microexon-tag spanning region | 45884717-45885483 |
Microexon-tag prediction score | 0.9517 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | Zm00001d003491_T004x |
Reference Transcript ID | Zm00001d003491_T004 |
Gene ID | Zm00001d003491 |
Gene Name | NA |
Transcript ID | Zm00001d003491_T002 |
Protein ID | Zm00001d003491_P002 |
Gene ID | Zm00001d003491 |
Gene Name | NA |
Pfam domain motif | Unknown |
Motif E-value | NA |
Motif start | NA |
Motif end | NA |
Protein seq | >Zm00001d003491_P002 MEALLELEKMQRVLSLMSSRGLSHTDSSCGGAAADRFLAQFLLFMLDASNEDCLHVVPDDNTSKVRPALLRTELKSGIQY WSLERKLCQALLRNEKVRRDLCLLSMNCIWTSCQFQNFWLRYLMTCEFALNLIPMHHSITKWYDYEDDVMNNTFNILRMF AAIYGPLEAPNMLAKCIGEAEEKYESFSKKLDPSLSGSYWRRCEEATKEGGKTSGHAYGTWNIPRVISNEDAFRRERRSK HDACAVIT* |
CDS seq | >Zm00001d003491_T002 ATGGAGGCGCTGCTGGAGCTCGAGAAGATGCAGAGGGTGCTGTCCCTCATGAGTTCACGCGGCCTCTCCCACACCGACTC CAGCTGCGGCGGCGCTGCCGCTGACCGCTTCCTCGCCCAATTCCTCCTCTTCATGTTAGATGCTTCAAATGAAGACTGTT TACATGTAGTCCCAGATGACAACACTTCAAAAGTAAGACCTGCATTATTGCGAACTGAACTCAAATCAGGCATTCAGTAT TGGTCTCTAGAGAGGAAGCTCTGCCAAGCATTACTAAGAAATGAGAAGGTAAGGAGAGACCTTTGTTTGCTGTCAATGAA TTGCATATGGACTTCTTGTCAGTTTCAGAATTTTTGGTTGAGATATCTGATGACCTGTGAGTTTGCTCTGAATCTTATTC CCATGCATCACAGCATAACAAAATGGTATGATTATGAGGATGACGTTATGAACAATACGTTCAATATCCTTCGCATGTTT GCTGCAATATATGGACCATTAGAGGCACCGAATATGCTGGCCAAGTGCATAGGCGAGGCTGAAGAGAAATACGAGAGCTT CTCCAAGAAACTGGATCCTAGTCTCTCAGGTAGTTACTGGAGAAGATGTGAGGAAGCGACGAAGGAAGGCGGAAAAACAT CAGGCCATGCATATGGAACATGGAATATCCCTCGTGTGATAAGCAACGAAGATGCTTTCCGACGTGAAAGACGGAGCAAA CACGATGCTTGTGCTGTGATCACTTGA |
Microexon DNA seq | GTATGATTATGAG |
Microexon Amino Acid seq | LYDYE |
Microexon-tag DNA Seq | GACTTCTTGTCAGTTTCAGAATTTTTGGTTGAGATATCTGATGACCTGTATGATTATGAGGATGACGTTATGAACAATACGTTCAATATCCTTCGCATGTTTGCTGCA |
Microexon-tag Amino Acid seq | DFLSVSEFLVEISDDLYDYEDDVMNNTFNILRMFAA |
Transcript ID | Zm.9885.1 |
Gene ID | Zm.9885 |
Gene Name | NA |
Pfam domain motif | Unknown |
Motif E-value | NA |
Motif start | NA |
Motif end | NA |
Protein seq | >Zm.9885.1 MRRKASGFWNLEPNAAFPNWGHTLTSASFLFYFRSPPFSVCYFASLEQNLKQLEAKPRYCEKRKRGGRGGAAMEALLELE KMQRVLSLMSSRGLSHTDSSCGGAAADRFLAQFLLFMVQPFDSLTLENKFLLISELLRKATPNTLEEVQHLTHLEANKDI CSGGSLQPIKKFKMHAEKSTVQAMPMVGFDAMARAKSTLEDFCRSYFMFHGLDVNKPQAIFKYLPVLSFTESYIYQLDAS NEDCLHVVPDDNTSKVLGKKEESLNETSLSQMIEPLEGLLQCQGLMTDRLRTELKSGIQYWSLERKLCQALLRNEKISIE DVMMAIHLKSFDYRVLNLLMFQLTGQHVNELHMDFLSVSEFLVEISDDLYDYEDDVMNNTFNILRMFAAIYGPLEAPNML AKCIGEAEEKYESFSKKLDPSLSGSYWRRCEEATKEGGKTSGHAYGTWNIPRVISNEDAFRRERRSKHDACAVIT* |
CDS seq | >Zm.9885.1 ATGAGGAGAAAGGCCTCAGGATTTTGGAATTTGGAACCCAACGCTGCATTTCCCAACTGGGGGCACACATTAACCTCAGC CTCATTTCTCTTTTATTTCCGCTCTCCTCCATTCTCTGTTTGCTACTTTGCAAGTCTCGAACAAAACCTGAAGCAACTCG AAGCGAAGCCGCGATACTGCGAGAAGCGGAAGCGGGGAGGGCGAGGAGGAGCAGCAATGGAGGCGCTGCTGGAGCTCGAG AAGATGCAGAGGGTGCTGTCCCTCATGAGTTCACGCGGCCTCTCCCACACCGACTCCAGCTGCGGCGGCGCTGCCGCTGA CCGCTTCCTCGCCCAATTCCTCCTCTTCATGGTGCAACCGTTTGATTCTCTTACCCTGGAGAATAAGTTCCTTTTGATCT CTGAGCTATTAAGAAAGGCTACTCCTAATACTTTGGAAGAAGTGCAGCATCTCACCCATCTGGAAGCTAATAAAGATATA TGTTCTGGAGGTTCACTCCAGCCAATTAAGAAGTTTAAGATGCATGCCGAGAAATCAACCGTTCAAGCTATGCCGATGGT TGGTTTTGATGCGATGGCAAGAGCTAAGTCTACGCTTGAAGATTTTTGTAGGTCGTACTTTATGTTTCATGGTTTGGATG TTAACAAGCCACAAGCCATTTTCAAGTATCTACCTGTTCTTTCTTTCACAGAGAGTTACATATATCAGTTAGATGCTTCA AATGAAGACTGTTTACATGTAGTCCCAGATGACAACACTTCAAAAGTGTTGGGAAAGAAAGAAGAATCTCTCAATGAGAC ATCCTTGTCTCAAATGATTGAACCCCTTGAAGGGCTTCTTCAGTGCCAAGGATTAATGACAGACCGATTGCGAACTGAAC TCAAATCAGGCATTCAGTATTGGTCTCTAGAGAGGAAGCTCTGCCAAGCATTACTAAGAAATGAGAAGATCTCGATTGAA GATGTTATGATGGCAATCCATCTGAAATCATTTGACTATCGAGTTCTTAACCTGTTGATGTTTCAACTTACTGGTCAGCA TGTCAATGAATTGCATATGGACTTCTTGTCAGTTTCAGAATTTTTGGTTGAGATATCTGATGACCTGTATGATTATGAGG ATGACGTTATGAACAATACGTTCAATATCCTTCGCATGTTTGCTGCAATATATGGACCATTAGAGGCACCGAATATGCTG GCCAAGTGCATAGGCGAGGCTGAAGAGAAATACGAGAGCTTCTCCAAGAAACTGGATCCTAGTCTCTCAGGTAGTTACTG GAGAAGATGTGAGGAAGCGACGAAGGAAGGCGGAAAAACATCAGGCCATGCATATGGAACATGGAATATCCCTCGTGTGA TAAGCAACGAAGATGCTTTCCGACGTGAAAGACGGAGCAAACACGATGCTTGTGCTGTGATCACTTGA |