
Microexon ID | Pp_3:10039830-10039842:- |
Species | Physcomitrium patens | Coordinates | 3:10039830..10039842 |
Microexon Cluster ID | MEP33 |
Size | 13 |
Phase | 2 |
Pfam Domain Motif | Unknown |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 47,13,48 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | GAVTTYYTRTCARTHTCRGARTTYCTWGTKGARRTWTCTGATGAYYTGTWTGAYTAYGAGGATGAYGTKTTRRAGAAYAAYTTCAAYATTYTGCGCATGTTTGTYRRA |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | GTACGACTATGAG |
Microexon Amino Acid seq | LYDYE |
Microexon-tag DNA Seq | GAGTTTCTTTCTATCTCGGAGCTTCTCGTGGAGATGGCTGATGATTTGTACGACTATGAGGCAGATATAGGCAAGAATAGCTTCAACGTGCTTCGAATGTTTTTGTAC |
Microexon-tag Amino Acid Seq | EFLSISELLVEMADDLYDYEADIGKNSFNVLRMFLY |
Microexon-tag spanning region | 10039661-10040055 |
Microexon-tag prediction score | 0.8966 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | Pp3c3_14090V3.1x |
Reference Transcript ID | Pp3c3_14090V3.1 |
Gene ID | Pp3c3_14090 |
Gene Name | NA |
Transcript ID | Pp3c3_14090V3.1 |
Protein ID | Pp3c3_14090V3.1 |
Gene ID | Pp3c3_14090 |
Gene Name | NA |
Pfam domain motif | Unknown |
Motif E-value | NA |
Motif start | NA |
Motif end | NA |
Protein seq | >Pp3c3_14090V3.1 MEALERLQAVHAHLRLLHTHDIITTHSPSNRFLADFLLLLGESAGNSAEMEELCGVLVHAIPKMMRTSLFDEMACANASA AGSRSVPNSPRSPGDELKIEDVTPPKSNRKGHRRSKNSEMSPFVREKTLTTPDHRSASYEGGVVNCLISFKSMERARSTL EDFCRSYFMFHNMDVHNPIHVFRYLPLLVFVESYIYQLDEQNEDQLCFSALTGDSKPSCEVSSEFASGLGKDPFAGLRVV LQEHDLLTKRIEDELMNGLHYWHLEHILCTAISAKEEVKADDVVEALRLKSFDYRVLNLLMYGLRNEPVNEAHFEFLSIS ELLVEMADDLYDYEADIGKNSFNVLRMFLYIFGPSEAPTMLADFIGRSEDKYQILLTELEPHLQVQYNKRCEEAVKEGDE LT* |
CDS seq | >Pp3c3_14090V3.1 ATGGAGGCACTGGAGCGTTTGCAAGCAGTTCATGCCCACCTTCGGCTTCTTCATACCCATGATATCATCACTACCCACAG CCCTTCCAACCGATTTCTCGCTGATTTTCTCCTGCTGCTGGGTGAATCGGCCGGGAATTCTGCCGAGATGGAGGAGCTAT GTGGAGTGTTGGTACATGCAATTCCGAAGATGATGAGGACATCCTTGTTTGATGAGATGGCATGTGCGAATGCGTCAGCT GCTGGTAGTAGATCAGTACCTAACTCGCCCAGGAGCCCAGGAGATGAGCTCAAGATCGAGGATGTGACTCCGCCTAAAAG TAATCGTAAAGGTCATCGAAGGAGTAAGAATTCAGAGATGAGCCCATTTGTAAGAGAGAAAACATTGACGACGCCAGACC ACAGAAGTGCATCATACGAAGGTGGTGTAGTGAATTGCCTGATAAGTTTTAAGAGCATGGAGAGGGCTCGCTCCACACTT GAAGATTTTTGCAGGTCGTACTTTATGTTTCATAACATGGACGTGCACAATCCCATTCACGTCTTTCGCTACCTGCCGCT CCTTGTCTTTGTCGAGTCCTACATATATCAGCTAGATGAGCAGAACGAAGATCAATTATGTTTTTCAGCATTAACGGGAG ACTCAAAACCTTCATGCGAGGTCTCAAGTGAGTTCGCAAGTGGATTAGGAAAGGATCCATTCGCAGGATTGCGAGTTGTA CTGCAGGAACATGATTTACTAACAAAGAGGATTGAAGATGAGCTAATGAATGGTCTTCATTATTGGCATTTGGAGCATAT TCTTTGTACTGCGATTTCAGCTAAAGAAGAGGTTAAGGCTGATGATGTTGTGGAAGCTTTACGCCTCAAGTCATTTGACT ATCGTGTGCTAAACCTTCTCATGTATGGTTTGCGCAATGAACCGGTCAATGAGGCGCACTTTGAGTTTCTTTCTATCTCG GAGCTTCTCGTGGAGATGGCTGATGATTTGTACGACTATGAGGCAGATATAGGCAAGAATAGCTTCAACGTGCTTCGAAT GTTTTTGTACATATTCGGGCCTAGTGAAGCCCCAACAATGCTTGCTGATTTTATTGGAAGAAGTGAAGACAAGTATCAAA TTCTGTTGACAGAGCTGGAACCGCATCTTCAAGTCCAGTATAACAAACGGTGCGAGGAGGCTGTCAAAGAAGGTGATGAG CTCACGTAG |
Microexon DNA seq | GTACGACTATGAG |
Microexon Amino Acid seq | LYDYE |
Microexon-tag DNA Seq | GAGTTTCTTTCTATCTCGGAGCTTCTCGTGGAGATGGCTGATGATTTGTACGACTATGAGGCAGATATAGGCAAGAATAGCTTCAACGTGCTTCGAATGTTTTTGTAC |
Microexon-tag Amino Acid seq | EFLSISELLVEMADDLYDYEADIGKNSFNVLRMFLY |
Transcript ID | Pp3c3_14090V3.2 |
Gene ID | Pp.18185 |
Gene Name | NA |
Pfam domain motif | Unknown |
Motif E-value | NA |
Motif start | NA |
Motif end | NA |
Protein seq | >Pp3c3_14090V3.2 MWSVGTCNSEAAGSRSVPNSPRSPGDELKIEDVTPPKSNRKGHRRSKNSEMSPFVREKTLTTPDHRSASYEGGVVNCLIS FKSMERARSTLEDFCRSYFMFHNMDVHNPIHVFRYLPLLVFVESYIYQLDEQNEDQLCFSALTGDSKPSCEVSSEFASGL GKDPFAGLRVVLQEHDLLTKRIEDELMNGLHYWHLEHILCTAISAKEEVKADDVVEALRLKSFDYRVLNLLMYGLRNEPV NEAHFEFLSISELLVEMADDLYDYEADIGKNSFNVLRMFLYIFGPSEAPTMLADFIGRSEDKYQILLTELEPHLQVQYNK RCEEAVKEGVYKGSHRCEGQAKTRMPTANTLLP* |
CDS seq | >Pp3c3_14090V3.2 ATGTGGAGTGTTGGTACATGCAATTCCGAAGCTGCTGGTAGTAGATCAGTACCTAACTCGCCCAGGAGCCCAGGAGATGA GCTCAAGATCGAGGATGTGACTCCGCCTAAAAGTAATCGTAAAGGTCATCGAAGGAGTAAGAATTCAGAGATGAGCCCAT TTGTAAGAGAGAAAACATTGACGACGCCAGACCACAGAAGTGCATCATACGAAGGTGGTGTAGTGAATTGCCTGATAAGT TTTAAGAGCATGGAGAGGGCTCGCTCCACACTTGAAGATTTTTGCAGGTCGTACTTTATGTTTCATAACATGGACGTGCA CAATCCCATTCACGTCTTTCGCTACCTGCCGCTCCTTGTCTTTGTCGAGTCCTACATATATCAGCTAGATGAGCAGAACG AAGATCAATTATGTTTTTCAGCATTAACGGGAGACTCAAAACCTTCATGCGAGGTCTCAAGTGAGTTCGCAAGTGGATTA GGAAAGGATCCATTCGCAGGATTGCGAGTTGTACTGCAGGAACATGATTTACTAACAAAGAGGATTGAAGATGAGCTAAT GAATGGTCTTCATTATTGGCATTTGGAGCATATTCTTTGTACTGCGATTTCAGCTAAAGAAGAGGTTAAGGCTGATGATG TTGTGGAAGCTTTACGCCTCAAGTCATTTGACTATCGTGTGCTAAACCTTCTCATGTATGGTTTGCGCAATGAACCGGTC AATGAGGCGCACTTTGAGTTTCTTTCTATCTCGGAGCTTCTCGTGGAGATGGCTGATGATTTGTACGACTATGAGGCAGA TATAGGCAAGAATAGCTTCAACGTGCTTCGAATGTTTTTGTACATATTCGGGCCTAGTGAAGCCCCAACAATGCTTGCTG ATTTTATTGGAAGAAGTGAAGACAAGTATCAAATTCTGTTGACAGAGCTGGAACCGCATCTTCAAGTCCAGTATAACAAA CGGTGCGAGGAGGCTGTCAAAGAAGGTGTTTACAAGGGTAGCCACAGATGTGAGGGGCAGGCCAAAACAAGGATGCCTAC GGCAAACACACTACTTCCATAA |