
Microexon ID | Pp_26:1867603-1867615:- |
Species | Physcomitrium patens | Coordinates | 26:1867603..1867615 |
Microexon Cluster ID | MEP33 |
Size | 13 |
Phase | 2 |
Pfam Domain Motif | Unknown |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 47,13,48 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | GAVTTYYTRTCARTHTCRGARTTYCTWGTKGARRTWTCTGATGAYYTGTWTGAYTAYGAGGATGAYGTKTTRRAGAAYAAYTTCAAYATTYTGCGCATGTTTGTYRRA |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | GTTCGACTATGAG |
Microexon Amino Acid seq | LFDYE |
Microexon-tag DNA Seq | GAGTTTCTCTCCGTTTCGGAACTACTTGTAGAGATAAGCGATGATTTGTTCGACTATGAGGAAGATGTAGTCAAAAACACCTTTAATGTGCTTCGTATGTTTGTTCAC |
Microexon-tag Amino Acid Seq | EFLSVSELLVEISDDLFDYEEDVVKNTFNVLRMFVH |
Microexon-tag spanning region | 1867427-1867829 |
Microexon-tag prediction score | 0.9025 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | Pp3c26_3770V3.1x |
Reference Transcript ID | Pp3c26_3770V3.1 |
Gene ID | Pp3c26_3770 |
Gene Name | NA |
Transcript ID | Pp3c26_3770V3.1 |
Protein ID | Pp3c26_3770V3.1 |
Gene ID | Pp3c26_3770 |
Gene Name | NA |
Pfam domain motif | Unknown |
Motif E-value | NA |
Motif start | NA |
Motif end | NA |
Protein seq | >Pp3c26_3770V3.1 MEALERLEVVHVHLQLLHTHGIATSHDPSNRFLADFLLLLGESGKSYVEMQRLCEVLLDAVPKMKGSSLFDEMARATSSE DKLTMENFTLHKGLNHRGGHVRADSVTLQMSEVVGEEVLTTQQRRSAPCERSVLSCMISFNSMERARSTLEDFCRSYFMF HGMDAQNPTHIFRYLPLLVFVESFIYQLDEENEDQLCLSEGTGGSNRSHDVSSEFAYGLGKDPFTGMRSILQQQDLLTER IDNELKDGLKYWCLEQSLCTALSTGKEVKPEDVLRALRLKSFDYRILNLLLYGLLHEPVNEAHFEFLSVSELLVEISDDL FDYEEDVVKNTFNVLRMFVHTYGSNDAPIKLAQFISKIEDEYQALLVALEPDIRDKYTQRCEEAVKEGGSKSVHVLGDWT IPPLITDENAFRIRVNEDA* |
CDS seq | >Pp3c26_3770V3.1 ATGGAGGCCTTGGAGCGTCTGGAAGTAGTTCATGTCCACTTGCAGCTGCTCCACACGCACGGGATCGCCACCTCGCATGA CCCATCCAATCGTTTCCTCGCCGATTTCCTGCTGCTGCTGGGTGAGTCAGGCAAGAGTTATGTCGAGATGCAGAGGTTAT GCGAAGTCTTACTTGACGCGGTTCCAAAGATGAAGGGTTCGTCGTTGTTTGATGAGATGGCGAGGGCAACTTCCTCGGAA GACAAGCTCACGATGGAGAATTTCACGCTACACAAGGGTTTGAATCACCGAGGAGGTCATGTACGTGCCGATTCTGTAAC TTTGCAAATGAGCGAAGTTGTTGGTGAAGAAGTACTGACTACACAACAACGACGAAGTGCTCCTTGTGAGCGTTCTGTGT TGAGTTGCATGATTAGTTTTAACAGCATGGAGCGAGCTCGCTCCACACTAGAGGATTTCTGCAGATCGTACTTTATGTTT CATGGCATGGACGCACAGAATCCCACACATATCTTTCGCTATCTCCCGCTCCTTGTTTTTGTCGAGTCCTTCATATATCA GCTGGATGAGGAGAATGAAGATCAACTATGCTTATCGGAAGGGACGGGTGGTTCCAATCGGTCACATGATGTCTCAAGTG AATTTGCATACGGTTTAGGGAAGGACCCATTCACAGGAATGCGGTCTATACTTCAACAACAGGATTTACTAACGGAGAGG ATTGATAATGAACTAAAGGATGGTCTAAAGTATTGGTGTTTGGAGCAGTCCCTTTGTACTGCCCTCTCAACTGGAAAAGA GGTAAAGCCTGAAGATGTTTTACGAGCTCTACGACTCAAATCATTTGACTATCGTATACTTAACCTTCTTCTATATGGCT TGCTCCATGAACCGGTCAATGAGGCTCATTTTGAGTTTCTCTCCGTTTCGGAACTACTTGTAGAGATAAGCGATGATTTG TTCGACTATGAGGAAGATGTAGTCAAAAACACCTTTAATGTGCTTCGTATGTTTGTTCACACGTATGGGTCTAATGATGC CCCCATCAAGCTCGCTCAATTCATTAGTAAAATTGAAGACGAATACCAAGCACTGTTAGTGGCTTTGGAACCGGATATTC GAGATAAATACACACAGCGGTGTGAGGAGGCTGTAAAAGAAGGGGGGAGCAAGTCTGTGCACGTTCTAGGAGATTGGACA ATTCCTCCCCTCATCACTGACGAAAATGCCTTCCGCATTCGGGTCAATGAAGATGCATGA |
Microexon DNA seq | GTTCGACTATGAG |
Microexon Amino Acid seq | LFDYE |
Microexon-tag DNA Seq | GAGTTTCTCTCCGTTTCGGAACTACTTGTAGAGATAAGCGATGATTTGTTCGACTATGAGGAAGATGTAGTCAAAAACACCTTTAATGTGCTTCGTATGTTTGTTCAC |
Microexon-tag Amino Acid seq | EFLSVSELLVEISDDLFDYEEDVVKNTFNVLRMFVH |
Transcript ID | Pp.16980.1 |
Gene ID | Pp.16980 |
Gene Name | NA |
Pfam domain motif | Unknown |
Motif E-value | NA |
Motif start | NA |
Motif end | NA |
Protein seq | >Pp.16980.1 MFHGMDAQNPTHIFRYLPLLVFVESFIYQLDEENEDQLCLSEGTGGSNRSHDVSSEFAYGLGKDPFTGMRSILQQQDLLT ERIDNELKDGLKYWCLEQSLCTALSTGKEVKPEDVLRALRLKSFDYRILNLLLYGLLHEPVNEAHFEFLSVSELLVEISD DLFDYEEDVVKNTFNVLRMFVHTYGSNDAPIKLAQFISKIEDEYQALLVALEPDIRDKYTQRCEEAVKEGGSKSVHVLGD WTIPPLITDENAFRIRVNEDA* |
CDS seq | >Pp.16980.1 ATGTTTCATGGCATGGACGCACAGAATCCCACACATATCTTTCGCTATCTCCCGCTCCTTGTTTTTGTCGAGTCCTTCAT ATATCAGCTGGATGAGGAGAATGAAGATCAACTATGCTTATCGGAAGGGACGGGTGGTTCCAATCGGTCACATGATGTCT CAAGTGAATTTGCATACGGTTTAGGGAAGGACCCATTCACAGGAATGCGGTCTATACTTCAACAACAGGATTTACTAACG GAGAGGATTGATAATGAACTAAAGGATGGTCTAAAGTATTGGTGTTTGGAGCAGTCCCTTTGTACTGCCCTCTCAACTGG AAAAGAGGTAAAGCCTGAAGATGTTTTACGAGCTCTACGACTCAAATCATTTGACTATCGTATACTTAACCTTCTTCTAT ATGGCTTGCTCCATGAACCGGTCAATGAGGCTCATTTTGAGTTTCTCTCCGTTTCGGAACTACTTGTAGAGATAAGCGAT GATTTGTTCGACTATGAGGAAGATGTAGTCAAAAACACCTTTAATGTGCTTCGTATGTTTGTTCACACGTATGGGTCTAA TGATGCCCCCATCAAGCTCGCTCAATTCATTAGTAAAATTGAAGACGAATACCAAGCACTGTTAGTGGCTTTGGAACCGG ATATTCGAGATAAATACACACAGCGGTGTGAGGAGGCTGTAAAAGAAGGGGGGAGCAAGTCTGTGCACGTTCTAGGAGAT TGGACAATTCCTCCCCTCATCACTGACGAAAATGCCTTCCGCATTCGGGTCAATGAAGATGCATGA |