
Microexon ID | Zm_9:18821254-18821266:- |
Species | Zea mays | Coordinates | 9:18821254..18821266 |
Microexon Cluster ID | MEP31 |
Size | 13 |
Phase | 0 |
Pfam Domain Motif | TPT |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 48,13,47 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | GCTGTYATGTCTGGKTTYCGYTGGTSYATGACTCARATTCTTYTGCAGAAAGAARMHTAYGGTYTRAARAATCCAYTTACCTTGATGAGYTATGTKACYCCAGTGATG |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | AAAGACACTTACG |
Microexon Amino Acid seq | KDTYG |
Microexon-tag DNA Seq | GCTGTTATGTCGGGATTCCGTTGGTCCATGACTCAGATTCTACTGCAGAAAGACACTTACGGCCTGAAGAATCCAATTACCTTGATGAGCCATGTTACGCCAGTGATG |
Microexon-tag Amino Acid Seq | AVMSGFRWSMTQILLQKDTYGLKNPITLMSHVTPVM |
Microexon-tag spanning region | 18819760-18821448 |
Microexon-tag prediction score | 0.9676 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | Zm00001d045316_T001x |
Reference Transcript ID | Zm00001d045316_T001 |
Gene ID | Zm00001d045316 |
Gene Name | NA |
Transcript ID | Zm00001d045316_T001 |
Protein ID | Zm00001d045316_P001 |
Gene ID | Zm00001d045316 |
Gene Name | NA |
Pfam domain motif | TPT |
Motif E-value | 3.5e-21 |
Motif start | 87 |
Motif end | 358 |
Protein seq | >Zm00001d045316_P001 MHPKPEGGEANGAAAEAGSPRSGNFRQRSMHAAPADPEAARRAFDVENPPPCSAAAGGGLRPSESVTKLESLERAERAAL APAVVLRTGFYILVWYAFSTCLTLYNKTLLGDKLGKFPAPLLMNTVHFALQAGLSKLIIFLQSKGPEAAVEMGWKDYFIR VVPTALGTALDINLSNASLVFISVTFATMCKSASPIFLLLFAFAFRLENASIKLLGIIVVISTGVLLTVSKETEFDFLGF IFVTLAAVMSGFRWSMTQILLQKDTYGLKNPITLMSHVTPVMAIATMILSLLLDPWSEFKKNSYFDNPWHVMRSCLLMLI GGTLAFFMVLTEYILISATSAITVTIAGVVKESVTILVHLHQEFSSTIPPFPKERYEKFKRGHIDEDDANSPSCTGDVKY IILDDLEYQDEFEEEDT* |
CDS seq | >Zm00001d045316_T001 ATGCATCCCAAGCCCGAGGGCGGCGAAGCCAACGGGGCCGCCGCGGAGGCGGGCTCCCCGCGGTCCGGCAACTTCCGGCA GCGGAGCATGCACGCCGCCCCCGCGGATCCGGAGGCGGCGCGCCGGGCGTTCGATGTCGAGAACCCCCCGCCTTGCTCCG CCGCCGCGGGCGGCGGGCTCCGGCCCAGCGAGTCCGTCACCAAGCTGGAGTCGCTGGAGCGCGCGGAGCGCGCCGCGCTG GCGCCCGCCGTCGTGCTCAGGACCGGGTTCTACATCCTGGTGTGGTACGCGTTCAGCACCTGCCTCACCCTATATAACAA GACGCTGCTGGGGGACAAGCTCGGCAAGTTCCCGGCGCCGCTGCTGATGAACACCGTGCACTTCGCGCTGCAGGCGGGGC TCTCCAAGCTCATAATCTTCTTACAGTCCAAGGGGCCGGAGGCCGCCGTCGAGATGGGGTGGAAAGACTACTTCATCAGA GTCGTGCCAACTGCTCTCGGGACGGCCTTGGACATAAACCTGAGCAACGCATCTCTTGTGTTCATCTCGGTGACGTTTGC TACTATGTGTAAATCAGCCTCCCCGATATTCCTTTTGCTTTTTGCGTTTGCATTTAGGTTGGAGAATGCTAGCATCAAGC TTCTAGGAATTATAGTTGTTATTTCTACTGGAGTTCTGTTGACAGTTTCCAAGGAGACGGAGTTTGACTTCTTGGGCTTC ATTTTTGTGACGCTTGCTGCTGTTATGTCGGGATTCCGTTGGTCCATGACTCAGATTCTACTGCAGAAAGACACTTACGG CCTGAAGAATCCAATTACCTTGATGAGCCATGTTACGCCAGTGATGGCCATAGCCACTATGATACTATCTCTATTACTGG ACCCTTGGAGTGAATTTAAAAAAAATTCATATTTCGATAACCCTTGGCATGTCATGCGCAGTTGCCTACTTATGCTTATA GGAGGAACTTTAGCTTTTTTCATGGTGTTAACAGAGTATATACTTATTTCAGCAACAAGTGCCATAACCGTCACAATAGC TGGAGTAGTAAAAGAATCTGTAACCATTTTGGTTCATTTACATCAAGAATTTTCATCTACGATACCCCCTTTCCCAAAAG AAAGGTATGAGAAATTCAAAAGGGGTCATATAGATGAGGATGATGCCAACTCTCCTTCATGTACTGGTGACGTCAAGTAC ATTATTCTAGACGACTTGGAGTATCAGGATGAATTTGAGGAGGAAGATACATAA |
Microexon DNA seq | AAAGACACTTACG |
Microexon Amino Acid seq | KDTYG |
Microexon-tag DNA Seq | GCTGTTATGTCGGGATTCCGTTGGTCCATGACTCAGATTCTACTGCAGAAAGACACTTACGGCCTGAAGAATCCAATTACCTTGATGAGCCATGTTACGCCAGTGATG |
Microexon-tag Amino Acid seq | AVMSGFRWSMTQILLQKDTYGLKNPITLMSHVTPVM |
Transcript ID | Zm00001d045316_T002 |
Gene ID | Zm.36411 |
Gene Name | NA |
Pfam domain motif | TPT |
Motif E-value | 1.1e-26 |
Motif start | 87 |
Motif end | 386 |
Protein seq | >Zm00001d045316_T002 MHPKPEGGEANGAAAEAGSPRSGNFRQRSMHAAPADPEAARRAFDVENPPPCSAAAGGGLRPSESVTKLESLERAERAAL APAVVLRTGFYILVWYAFSTCLTLYNKTLLGDKLGKFPAPLLMNTVHFALQAGLSKLIIFLQSKGPEAAVEMGWKDYFIR VVPTALGTALDINLSNASLVFISVTFATMCKSASPIFLLLFAFAFRLENASIKLLGIIVVISTGVLLTVSKETEFDFLGF IFVTLAAVMSGFRWSMTQILLQKDTYGLKNPITLMSHVTPVMAIATMILSLLLDPWSEFKKNSYFDNPWHVMRSCLLMLI GGTLAFFMVLTEYILISATSAITVTIAGVVKESVTILVAVFYFHDEFTWLKGVGLFTIMVGVSLFNWYKYEKFKRGHIDE DDANSPSCTGDVKYIILDDLEYQDEFEEEDT* |
CDS seq | >Zm00001d045316_T002 ATGCATCCCAAGCCCGAGGGCGGCGAAGCCAACGGGGCCGCCGCGGAGGCGGGCTCCCCGCGGTCCGGCAACTTCCGGCA GCGGAGCATGCACGCCGCCCCCGCGGATCCGGAGGCGGCGCGCCGGGCGTTCGATGTCGAGAACCCCCCGCCTTGCTCCG CCGCCGCGGGCGGCGGGCTCCGGCCCAGCGAGTCCGTCACCAAGCTGGAGTCGCTGGAGCGCGCGGAGCGCGCCGCGCTG GCGCCCGCCGTCGTGCTCAGGACCGGGTTCTACATCCTGGTGTGGTACGCGTTCAGCACCTGCCTCACCCTATATAACAA GACGCTGCTGGGGGACAAGCTCGGCAAGTTCCCGGCGCCGCTGCTGATGAACACCGTGCACTTCGCGCTGCAGGCGGGGC TCTCCAAGCTCATAATCTTCTTACAGTCCAAGGGGCCGGAGGCCGCCGTCGAGATGGGGTGGAAAGACTACTTCATCAGA GTCGTGCCAACTGCTCTCGGGACGGCCTTGGACATAAACCTGAGCAACGCATCTCTTGTGTTCATCTCGGTGACGTTTGC TACTATGTGTAAATCAGCCTCCCCGATATTCCTTTTGCTTTTTGCGTTTGCATTTAGGTTGGAGAATGCTAGCATCAAGC TTCTAGGAATTATAGTTGTTATTTCTACTGGAGTTCTGTTGACAGTTTCCAAGGAGACGGAGTTTGACTTCTTGGGCTTC ATTTTTGTGACGCTTGCTGCTGTTATGTCGGGATTCCGTTGGTCCATGACTCAGATTCTACTGCAGAAAGACACTTACGG CCTGAAGAATCCAATTACCTTGATGAGCCATGTTACGCCAGTGATGGCCATAGCCACTATGATACTATCTCTATTACTGG ACCCTTGGAGTGAATTTAAAAAAAATTCATATTTCGATAACCCTTGGCATGTCATGCGCAGTTGCCTACTTATGCTTATA GGAGGAACTTTAGCTTTTTTCATGGTGTTAACAGAGTATATACTTATTTCAGCAACAAGTGCCATAACCGTCACAATAGC TGGAGTAGTAAAAGAATCTGTAACCATTTTGGTTGCGGTATTTTATTTCCATGATGAATTTACTTGGTTGAAAGGGGTTG GTCTTTTCACCATTATGGTTGGTGTTAGCTTATTCAATTGGTACAAGTATGAGAAATTCAAAAGGGGTCATATAGATGAG GATGATGCCAACTCTCCTTCATGTACTGGTGACGTCAAGTACATTATTCTAGACGACTTGGAGTATCAGGATGAATTTGA GGAGGAAGATACATAA |