
Microexon ID | Zm_3:201243180-201243192:+ |
Species | Zea mays | Coordinates | 3:201243180..201243192 |
Microexon Cluster ID | MEP31 |
Size | 13 |
Phase | 0 |
Pfam Domain Motif | TPT |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 48,13,47 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | GCTGTYATGTCTGGKTTYCGYTGGTSYATGACTCARATTCTTYTGCAGAAAGAARMHTAYGGTYTRAARAATCCAYTTACCTTGATGAGYTATGTKACYCCAGTGATG |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | AAAGAGGAATACG |
Microexon Amino Acid seq | KEEYG |
Microexon-tag DNA Seq | GCTGTTATGTCTGGTTTCCGCTGGTCCATGACTCAGATTCTTCTCCAGAAAGAGGAATACGGATTAAAGAATCCTTTTACCTTGATGAGCCATGTTACCCCGGTGATG |
Microexon-tag Amino Acid Seq | AVMSGFRWSMTQILLQKEEYGLKNPFTLMSHVTPVM |
Microexon-tag spanning region | 201242964-201246589 |
Microexon-tag prediction score | 0.9825 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | Zm00001d043473_T001x |
Reference Transcript ID | Zm00001d043473_T001 |
Gene ID | Zm00001d043473 |
Gene Name | NA |
Transcript ID | Zm00001d043473_T001 |
Protein ID | NA |
Gene ID | Zm00001d043473 |
Gene Name | NA |
Pfam domain motif | NA |
Motif E-value | NA |
Motif start | NA |
Motif end | NA |
Protein seq | |
CDS seq |
Microexon DNA seq | AAAGAGGAATACG |
Microexon Amino Acid seq | KEEYG |
Microexon-tag DNA Seq | GCTGTTATGTCTGGTTTCCGCTGGTCCATGACTCAGATTCTTCTCCAGAAAGAGGAATACGGATTAAAGAATCCTTTTACCTTGATGAGCCATGTTACCCCGGTGATG |
Microexon-tag Amino Acid seq | AVMSGFRWSMTQILLQKEEYGLKNPFTLMSHVTPVM |
Transcript ID | Zm00001d043473_T009 |
Gene ID | Zm.16387 |
Gene Name | NA |
Pfam domain motif | TPT |
Motif E-value | 2e-31 |
Motif start | 128 |
Motif end | 427 |
Protein seq | >Zm00001d043473_T009 MGDCVVEDGHVHHPSDEVEGAVPLTVAVELDERAGESREEGGGQRKKVGGIRREPSFSRWCRDTSVAAASNTAVAAAISD SDSDDSEEFDLPLLPSSSGGGSSPMDIEAGATVRSDDLPISPRLLAKVIGLIACWYTLSTCLTLYNKEMLGKHMWKFPAP FLMNTVHFTMQAVASRAIVWFQQRGLEGGPNKMSWKDYCLRVVPTALATALDINLSNISLVFITVTFATMCKSASPIFIL LFAFMFRLEKPSFSLLGIMLVVSFGVLLTVAKETEFNLWGFIFIMLAAVMSGFRWSMTQILLQKEEYGLKNPFTLMSHVT PVMAIVTAIISIVMDPWHDFRASHFFDSSAHIIRSSLLLLLGGALAFFMVLTEYVLVSVTSAVTVTVAGIVKEAVTILVA VLFFNDPFTWLKALGLAIIIFGVSLFNIYKKHVFICNAWRTLSNDCLCYMMKV* |
CDS seq | >Zm00001d043473_T009 ATGGGGGACTGCGTCGTCGAGGACGGCCACGTGCACCATCCCTCGGATGAGGTGGAGGGCGCGGTTCCATTGACGGTAGC CGTGGAGCTCGATGAGCGGGCGGGAGAGTCACGGGAGGAGGGTGGTGGGCAGCGGAAGAAAGTGGGCGGGATCCGAAGGG AGCCGTCGTTCTCGCGGTGGTGCAGGGACACCTCTGTCGCCGCCGCCTCCAATACTGCCGTTGCTGCGGCGATCAGCGAC AGCGACAGCGACGACTCAGAGGAGTTCGACCTACCGCTCCTGCCATCCTCCTCGGGCGGCGGGAGCTCACCTATGGACAT TGAGGCGGGGGCGACGGTGAGATCTGATGATCTGCCGATCTCACCGAGGTTGCTTGCGAAGGTCATTGGGTTGATAGCGT GTTGGTACACGCTGAGCACATGCTTGACTCTGTACAACAAGGAGATGCTGGGGAAGCACATGTGGAAGTTCCCGGCGCCA TTCCTGATGAACACGGTGCATTTCACGATGCAGGCTGTGGCGTCCAGGGCCATAGTGTGGTTCCAGCAACGTGGCCTGGA GGGAGGGCCAAACAAAATGTCGTGGAAGGATTACTGTTTACGAGTTGTCCCAACAGCTTTGGCTACTGCTCTTGATATAA ATCTGAGCAACATTTCACTTGTTTTCATTACTGTGACATTTGCTACAATGTGTAAATCTGCTTCTCCAATTTTCATTCTT CTCTTTGCTTTTATGTTCAGGCTTGAGAAACCAAGCTTTAGCCTTCTTGGAATCATGCTGGTTGTTTCGTTTGGAGTTCT ACTAACAGTTGCTAAAGAGACAGAATTTAATCTGTGGGGATTTATATTTATTATGCTTGCTGCTGTTATGTCTGGTTTCC GCTGGTCCATGACTCAGATTCTTCTCCAGAAAGAGGAATACGGATTAAAGAATCCTTTTACCTTGATGAGCCATGTTACC CCGGTGATGGCAATAGTAACAGCAATTATTTCCATTGTGATGGATCCATGGCACGACTTCAGAGCAAGTCACTTTTTTGA TAGTTCTGCTCACATAATAAGAAGCAGCTTGTTGCTGCTTTTAGGTGGCGCTTTGGCCTTTTTCATGGTTTTGACAGAAT ATGTCCTTGTTTCTGTGACTAGTGCTGTAACAGTGACTGTAGCAGGAATTGTGAAGGAAGCTGTCACTATTCTGGTTGCT GTGCTATTCTTCAACGATCCATTTACATGGTTGAAGGCGCTTGGGCTAGCAATAATAATATTTGGTGTCAGTCTATTCAA TATTTACAAGAAGCATGTGTTTATTTGTAATGCATGGAGAACATTGAGTAACGATTGTTTGTGCTACATGATGAAGGTAT AA |