
Microexon ID | Pp_3:3785116-3785128:+ |
Species | Physcomitrium patens | Coordinates | 3:3785116..3785128 |
Microexon Cluster ID | MEP31 |
Size | 13 |
Phase | 0 |
Pfam Domain Motif | TPT |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 48,13,47 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | GCTGTYATGTCTGGKTTYCGYTGGTSYATGACTCARATTCTTYTGCAGAAAGAARMHTAYGGTYTRAARAATCCAYTTACCTTGATGAGYTATGTKACYCCAGTGATG |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | AAAGAAGAGTATG |
Microexon Amino Acid seq | KEEYG |
Microexon-tag DNA Seq | ACTGTAATGTCGGGTTTCCGATGGACTGTGACGCAGCTTCTCTTGCAGAAAGAAGAGTATGGTTTGAACAATCCATTTGCAGCGATGAGTTATCTCACACCAGTAATG |
Microexon-tag Amino Acid Seq | TVMSGFRWTVTQLLLQKEEYGLNNPFAAMSYLTPVM |
Microexon-tag spanning region | 3784733-3785398 |
Microexon-tag prediction score | 0.9177 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | Pp3c3_5740V3.1x |
Reference Transcript ID | Pp3c3_5740V3.1 |
Gene ID | Pp3c3_5740 |
Gene Name | NA |
Transcript ID | Pp3c3_5740V3.1 |
Protein ID | Pp3c3_5740V3.1 |
Gene ID | Pp3c3_5740 |
Gene Name | NA |
Pfam domain motif | TPT |
Motif E-value | 2.1e-32 |
Motif start | 252 |
Motif end | 551 |
Protein seq | >Pp3c3_5740V3.1 MKEKEDARLEMIPLRMEDSLDIASERLGTNVANSGTPHVSIGLERPHELHNIECGMGNKTEGLERLSSEAKSTSFISIGM DRSSVEKPDNVGGRDVTSREAVKEVVSRDLIRVQKAGTYDLISRDVTSSESRSSLIHNESVGKSVGLVSDEDFDREFGAS ASGQSTPKRRNGSRGRSIGTSRLENGVGGDSFTEAVLKGSSLDVLKANAVELSPISRTSIGGKDHGITFCDEVELPELRS SARNSLISTIVKTVFIILIWYTFSTCLTLYNKLLLGENLGKFPAPLLMNTIHFSMQAIISTLLVHFWCGRTQSHIRMTWR DYFTRVVPTAAATALDIDLSNISIVFISVSFATMVKSGAPVFLLLFAFAFKLEVPSFKLMGIIVVISLGVMLTVAKETEF ELLGFILVLLATVMSGFRWTVTQLLLQKEEYGLNNPFAAMSYLTPVMAIMTLVFSLAIEPWHELSETAYFDTPRHTFESC ALMLLGGALAFFMVMAEYFLIAETSAVTLTIAGVVKEVVTIVVAVFFFKDEFTWLKGMGLVVIFIGVSLFNWFKYQKLVE GGLGNNANIQEVGRSSPKYTVIDDETAETFELEDDTDHVL* |
CDS seq | >Pp3c3_5740V3.1 ATGAAAGAGAAGGAGGATGCGCGGTTAGAAATGATCCCACTTAGGATGGAAGATTCCCTAGACATTGCATCGGAAAGATT AGGAACGAATGTTGCGAACTCTGGGACTCCACATGTATCCATCGGGCTTGAAAGGCCACACGAGCTACATAATATAGAGT GCGGAATGGGTAATAAAACAGAAGGACTTGAGAGATTATCTTCTGAGGCCAAATCCACCAGTTTTATCTCCATAGGCATG GATCGAAGTTCAGTTGAGAAACCGGACAATGTAGGTGGACGAGACGTTACCTCGAGGGAAGCGGTGAAAGAAGTTGTGTC TCGAGATCTAATAAGGGTACAGAAGGCGGGGACGTATGACCTAATCTCACGAGATGTAACTTCATCAGAGTCTCGATCTT CTCTCATTCATAATGAATCTGTTGGAAAGAGTGTTGGATTAGTATCTGATGAAGACTTCGATCGGGAATTTGGAGCCTCT GCTTCTGGGCAGTCTACGCCTAAGAGAAGGAATGGTTCAAGGGGCAGATCTATTGGAACATCACGATTGGAAAACGGTGT GGGAGGGGATTCTTTTACGGAGGCTGTTCTTAAAGGAAGTTCCCTTGATGTTTTGAAGGCGAATGCTGTAGAATTGTCTC CCATAAGCAGGACCAGCATTGGCGGCAAAGATCATGGCATCACTTTTTGTGATGAAGTGGAGCTGCCTGAATTGCGCTCT TCAGCGCGCAATTCTTTGATTTCGACTATAGTTAAGACTGTCTTTATAATCCTAATTTGGTATACTTTCAGCACTTGTCT CACGTTGTATAACAAGTTATTGTTAGGAGAAAATCTAGGCAAATTTCCAGCTCCTCTATTAATGAACACCATCCATTTCT CTATGCAAGCTATTATTTCAACCCTTCTTGTTCATTTTTGGTGTGGGAGAACTCAAAGCCACATTCGAATGACATGGAGA GATTATTTCACTAGAGTGGTTCCAACGGCTGCTGCAACAGCATTGGATATTGACCTGAGCAACATCTCTATTGTATTTAT TTCTGTTTCTTTTGCTACTATGGTCAAATCTGGAGCACCTGTATTCCTTCTCCTCTTTGCGTTTGCTTTCAAGTTGGAGG TGCCAAGTTTTAAGCTGATGGGAATCATTGTTGTAATTTCCTTAGGAGTGATGCTCACTGTTGCAAAGGAGACAGAATTT GAGCTTCTTGGATTCATTCTCGTGCTTTTGGCAACTGTAATGTCGGGTTTCCGATGGACTGTGACGCAGCTTCTCTTGCA GAAAGAAGAGTATGGTTTGAACAATCCATTTGCAGCGATGAGTTATCTCACACCAGTAATGGCTATTATGACTCTCGTAT TCTCATTAGCTATAGAACCCTGGCACGAGCTGAGTGAGACGGCTTACTTTGATACCCCACGACATACATTTGAAAGCTGT GCGCTGATGTTGCTTGGAGGGGCACTCGCTTTTTTCATGGTGATGGCAGAGTATTTTCTGATTGCGGAGACAAGTGCAGT GACTTTAACCATTGCTGGTGTCGTCAAGGAGGTCGTAACCATTGTGGTTGCTGTTTTCTTCTTTAAAGATGAGTTTACCT GGCTGAAGGGTATGGGTTTGGTAGTCATTTTCATTGGTGTTAGCCTGTTCAACTGGTTCAAGTACCAGAAGCTTGTTGAA GGCGGGCTGGGTAACAATGCAAATATTCAAGAAGTTGGTAGAAGTTCTCCCAAGTATACTGTCATCGACGATGAAACCGC TGAAACCTTTGAACTTGAAGACGACACTGATCACGTGTTATAA |
Microexon DNA seq | AAAGAAGAGTATG |
Microexon Amino Acid seq | KEEYG |
Microexon-tag DNA Seq | ACTGTAATGTCGGGTTTCCGATGGACTGTGACGCAGCTTCTCTTGCAGAAAGAAGAGTATGGTTTGAACAATCCATTTGCAGCGATGAGTTATCTCACACCAGTAATG |
Microexon-tag Amino Acid seq | TVMSGFRWTVTQLLLQKEEYGLNNPFAAMSYLTPVM |
Transcript ID | Pp3c3_5740V3.1 |
Gene ID | Pp.17912 |
Gene Name | NA |
Pfam domain motif | TPT |
Motif E-value | 2.1e-32 |
Motif start | 252 |
Motif end | 551 |
Protein seq | >Pp3c3_5740V3.1 MKEKEDARLEMIPLRMEDSLDIASERLGTNVANSGTPHVSIGLERPHELHNIECGMGNKTEGLERLSSEAKSTSFISIGM DRSSVEKPDNVGGRDVTSREAVKEVVSRDLIRVQKAGTYDLISRDVTSSESRSSLIHNESVGKSVGLVSDEDFDREFGAS ASGQSTPKRRNGSRGRSIGTSRLENGVGGDSFTEAVLKGSSLDVLKANAVELSPISRTSIGGKDHGITFCDEVELPELRS SARNSLISTIVKTVFIILIWYTFSTCLTLYNKLLLGENLGKFPAPLLMNTIHFSMQAIISTLLVHFWCGRTQSHIRMTWR DYFTRVVPTAAATALDIDLSNISIVFISVSFATMVKSGAPVFLLLFAFAFKLEVPSFKLMGIIVVISLGVMLTVAKETEF ELLGFILVLLATVMSGFRWTVTQLLLQKEEYGLNNPFAAMSYLTPVMAIMTLVFSLAIEPWHELSETAYFDTPRHTFESC ALMLLGGALAFFMVMAEYFLIAETSAVTLTIAGVVKEVVTIVVAVFFFKDEFTWLKGMGLVVIFIGVSLFNWFKYQKLVE GGLGNNANIQEVGRSSPKYTVIDDETAETFELEDDTDHVL* |
CDS seq | >Pp3c3_5740V3.1 ATGAAAGAGAAGGAGGATGCGCGGTTAGAAATGATCCCACTTAGGATGGAAGATTCCCTAGACATTGCATCGGAAAGATT AGGAACGAATGTTGCGAACTCTGGGACTCCACATGTATCCATCGGGCTTGAAAGGCCACACGAGCTACATAATATAGAGT GCGGAATGGGTAATAAAACAGAAGGACTTGAGAGATTATCTTCTGAGGCCAAATCCACCAGTTTTATCTCCATAGGCATG GATCGAAGTTCAGTTGAGAAACCGGACAATGTAGGTGGACGAGACGTTACCTCGAGGGAAGCGGTGAAAGAAGTTGTGTC TCGAGATCTAATAAGGGTACAGAAGGCGGGGACGTATGACCTAATCTCACGAGATGTAACTTCATCAGAGTCTCGATCTT CTCTCATTCATAATGAATCTGTTGGAAAGAGTGTTGGATTAGTATCTGATGAAGACTTCGATCGGGAATTTGGAGCCTCT GCTTCTGGGCAGTCTACGCCTAAGAGAAGGAATGGTTCAAGGGGCAGATCTATTGGAACATCACGATTGGAAAACGGTGT GGGAGGGGATTCTTTTACGGAGGCTGTTCTTAAAGGAAGTTCCCTTGATGTTTTGAAGGCGAATGCTGTAGAATTGTCTC CCATAAGCAGGACCAGCATTGGCGGCAAAGATCATGGCATCACTTTTTGTGATGAAGTGGAGCTGCCTGAATTGCGCTCT TCAGCGCGCAATTCTTTGATTTCGACTATAGTTAAGACTGTCTTTATAATCCTAATTTGGTATACTTTCAGCACTTGTCT CACGTTGTATAACAAGTTATTGTTAGGAGAAAATCTAGGCAAATTTCCAGCTCCTCTATTAATGAACACCATCCATTTCT CTATGCAAGCTATTATTTCAACCCTTCTTGTTCATTTTTGGTGTGGGAGAACTCAAAGCCACATTCGAATGACATGGAGA GATTATTTCACTAGAGTGGTTCCAACGGCTGCTGCAACAGCATTGGATATTGACCTGAGCAACATCTCTATTGTATTTAT TTCTGTTTCTTTTGCTACTATGGTCAAATCTGGAGCACCTGTATTCCTTCTCCTCTTTGCGTTTGCTTTCAAGTTGGAGG TGCCAAGTTTTAAGCTGATGGGAATCATTGTTGTAATTTCCTTAGGAGTGATGCTCACTGTTGCAAAGGAGACAGAATTT GAGCTTCTTGGATTCATTCTCGTGCTTTTGGCAACTGTAATGTCGGGTTTCCGATGGACTGTGACGCAGCTTCTCTTGCA GAAAGAAGAGTATGGTTTGAACAATCCATTTGCAGCGATGAGTTATCTCACACCAGTAATGGCTATTATGACTCTCGTAT TCTCATTAGCTATAGAACCCTGGCACGAGCTGAGTGAGACGGCTTACTTTGATACCCCACGACATACATTTGAAAGCTGT GCGCTGATGTTGCTTGGAGGGGCACTCGCTTTTTTCATGGTGATGGCAGAGTATTTTCTGATTGCGGAGACAAGTGCAGT GACTTTAACCATTGCTGGTGTCGTCAAGGAGGTCGTAACCATTGTGGTTGCTGTTTTCTTCTTTAAAGATGAGTTTACCT GGCTGAAGGGTATGGGTTTGGTAGTCATTTTCATTGGTGTTAGCCTGTTCAACTGGTTCAAGTACCAGAAGCTTGTTGAA GGCGGGCTGGGTAACAATGCAAATATTCAAGAAGTTGGTAGAAGTTCTCCCAAGTATACTGTCATCGACGATGAAACCGC TGAAACCTTTGAACTTGAAGACGACACTGATCACGTGTTATAA |