
Microexon ID | Ha_4:177161196-177161207:+ |
Species | Helianthus annuus | Coordinates | 4:177161196..177161207 |
Microexon Cluster ID | MEP30 |
Size | 12 |
Phase | 1 |
Pfam Domain Motif | SPARK |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 49,12,47 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | RATGTYTAYRRYCTTTGTCATATAASCCTSAARGAYTTYTCYCTYCAAGTTGGAWMWCAAGARTCTGGWTGYCTWYTDCCAAGYTTGCCTTCAGATGCAAYATTTGAY |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | TTGGATCAGAAG |
Microexon Amino Acid seq | VGSED |
Microexon-tag DNA Seq | AATGTATACGACATTTGTCGTGTTAAACTCAAAGATTTCTCACTCCAAGTTGGATCAGAAGACTCTGGTTGTTTGTTTCCAAGCTTGCCTTTCGATGTGACGTATGAT |
Microexon-tag Amino Acid Seq | NVYDICRVKLKDFSLQVGSEDSGCLFPSLPFDVTYD |
Microexon-tag spanning region | 177161009-177161391 |
Microexon-tag prediction score | 0.9274 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | OTG29935x |
Reference Transcript ID | OTG29935 |
Gene ID | HannXRQ_Chr04g0127601 |
Gene Name | NA |
Transcript ID | OTG29935 |
Protein ID | OTG29935 |
Gene ID | HannXRQ_Chr04g0127601 |
Gene Name | NA |
Pfam domain motif | SPARK |
Motif E-value | 0.3 |
Motif start | 251 |
Motif end | 334 |
Protein seq | >OTG29935 MMDLMLRFTLLLLLLHAGVSGSYSTVINSNLPRLNIKESQPVLPILSPSPLMPFTNVSVPKLSGKCPLNFSNVESVITTT AIDCWGSLAPYLANVVCCPQLDATINILLGQSSGTLTLNDDTLAKYCLSDITQLLEAQGSYNQLLELCSINHTNLTRASC PLVDLTQIENILNKSKVFESCKRIDPVKECSHRECENAITDAAINMASKNYSVPDMIDDCRKIVLRWLASKLEPSDASKV LRGTSSCKINKVCPLVFPDTKNVSKACGNTNNNQTTCCDTLEHYITKLQDQSFITNLQAISCASSFAASLQKANVSINVY DICRVKLKDFSLQVGSEDSGCLFPSLPFDVTYDQSSGIDFKCDLNDNVAAPWPLSPHSSSNPSSELPALPKATSDHKGLQ DKLCISTLILMLTLLLVHLMLNLES* |
CDS seq | >OTG29935 ATGATGGATCTCATGCTCCGGTTCACATTGCTGCTGCTTCTTCTCCATGCAGGCGTATCCGGGTCATATAGCACCGTAAT TAATTCTAATCTACCGCGATTAAACATTAAGGAATCTCAGCCTGTTCTCCCCATACTCTCACCTTCGCCGTTAATGCCAT TTACAAATGTTAGTGTGCCAAAACTTTCAGGAAAGTGTCCATTGAACTTCTCAAACGTCGAAAGCGTCATAACCACAACC GCAATTGATTGTTGGGGTTCACTAGCTCCATATCTAGCCAATGTAGTATGTTGCCCTCAACTAGATGCCACAATAAACAT CCTTTTAGGCCAATCTAGTGGAACCCTCACCCTTAACGACGACACTCTCGCTAAATATTGCCTCTCGGACATCACACAAC TCTTGGAAGCTCAAGGCTCCTATAACCAACTTCTTGAACTATGCTCGATCAACCACACGAACCTCACACGGGCTTCTTGC CCATTGGTAGATCTCACACAAATTGAAAACATTTTGAACAAATCTAAAGTTTTTGAATCTTGTAAAAGAATTGATCCTGT GAAAGAATGTAGCCATAGAGAATGTGAGAATGCTATAACGGATGCTGCGATAAACATGGCTTCGAAGAATTATAGTGTGC CGGACATGATTGATGATTGTAGGAAGATTGTGCTTCGTTGGCTCGCGAGTAAACTCGAACCTTCTGATGCAAGTAAAGTT TTGAGAGGAACTTCTAGTTGCAAGATCAATAAAGTTTGTCCGCTTGTCTTTCCTGACACGAAGAACGTTTCAAAAGCATG CGGAAACACAAATAATAACCAAACAACTTGTTGTGATACCTTGGAGCATTACATTACTAAGTTGCAAGATCAAAGCTTCA TTACAAACTTGCAAGCCATAAGTTGTGCTTCCTCGTTCGCTGCTAGTTTGCAAAAAGCAAATGTTTCGATTAATGTATAC GACATTTGTCGTGTTAAACTCAAAGATTTCTCACTCCAAGTTGGATCAGAAGACTCTGGTTGTTTGTTTCCAAGCTTGCC TTTCGATGTGACGTATGATCAAAGTTCAGGAATCGACTTTAAATGTGATCTTAACGACAATGTTGCAGCACCATGGCCGC TTTCTCCTCATTCTTCGTCTAATCCAAGCAGTGAGCTTCCAGCACTTCCTAAAGCAACATCAGATCATAAAGGGCTGCAG GATAAACTGTGCATTTCAACTTTAATATTGATGCTCACCTTGTTGCTTGTTCATTTGATGCTCAACTTAGAGTCATGA |
Microexon DNA seq | TTGGATCAGAAG |
Microexon Amino Acid seq | VGSED |
Microexon-tag DNA Seq | AATGTATACGACATTTGTCGTGTTAAACTCAAAGATTTCTCACTCCAAGTTGGATCAGAAGACTCTGGTTGTTTGTTTCCAAGCTTGCCTTTCGATGTGACGTATGAT |
Microexon-tag Amino Acid seq | NVYDICRVKLKDFSLQVGSEDSGCLFPSLPFDVTYD |
Transcript ID | OTG29935 |
Gene ID | Ha.43011 |
Gene Name | NA |
Pfam domain motif | SPARK |
Motif E-value | 0.3 |
Motif start | 251 |
Motif end | 334 |
Protein seq | >OTG29935 MMDLMLRFTLLLLLLHAGVSGSYSTVINSNLPRLNIKESQPVLPILSPSPLMPFTNVSVPKLSGKCPLNFSNVESVITTT AIDCWGSLAPYLANVVCCPQLDATINILLGQSSGTLTLNDDTLAKYCLSDITQLLEAQGSYNQLLELCSINHTNLTRASC PLVDLTQIENILNKSKVFESCKRIDPVKECSHRECENAITDAAINMASKNYSVPDMIDDCRKIVLRWLASKLEPSDASKV LRGTSSCKINKVCPLVFPDTKNVSKACGNTNNNQTTCCDTLEHYITKLQDQSFITNLQAISCASSFAASLQKANVSINVY DICRVKLKDFSLQVGSEDSGCLFPSLPFDVTYDQSSGIDFKCDLNDNVAAPWPLSPHSSSNPSSELPALPKATSDHKGLQ DKLCISTLILMLTLLLVHLMLNLES* |
CDS seq | >OTG29935 ATGATGGATCTCATGCTCCGGTTCACATTGCTGCTGCTTCTTCTCCATGCAGGCGTATCCGGGTCATATAGCACCGTAAT TAATTCTAATCTACCGCGATTAAACATTAAGGAATCTCAGCCTGTTCTCCCCATACTCTCACCTTCGCCGTTAATGCCAT TTACAAATGTTAGTGTGCCAAAACTTTCAGGAAAGTGTCCATTGAACTTCTCAAACGTCGAAAGCGTCATAACCACAACC GCAATTGATTGTTGGGGTTCACTAGCTCCATATCTAGCCAATGTAGTATGTTGCCCTCAACTAGATGCCACAATAAACAT CCTTTTAGGCCAATCTAGTGGAACCCTCACCCTTAACGACGACACTCTCGCTAAATATTGCCTCTCGGACATCACACAAC TCTTGGAAGCTCAAGGCTCCTATAACCAACTTCTTGAACTATGCTCGATCAACCACACGAACCTCACACGGGCTTCTTGC CCATTGGTAGATCTCACACAAATTGAAAACATTTTGAACAAATCTAAAGTTTTTGAATCTTGTAAAAGAATTGATCCTGT GAAAGAATGTAGCCATAGAGAATGTGAGAATGCTATAACGGATGCTGCGATAAACATGGCTTCGAAGAATTATAGTGTGC CGGACATGATTGATGATTGTAGGAAGATTGTGCTTCGTTGGCTCGCGAGTAAACTCGAACCTTCTGATGCAAGTAAAGTT TTGAGAGGAACTTCTAGTTGCAAGATCAATAAAGTTTGTCCGCTTGTCTTTCCTGACACGAAGAACGTTTCAAAAGCATG CGGAAACACAAATAATAACCAAACAACTTGTTGTGATACCTTGGAGCATTACATTACTAAGTTGCAAGATCAAAGCTTCA TTACAAACTTGCAAGCCATAAGTTGTGCTTCCTCGTTCGCTGCTAGTTTGCAAAAAGCAAATGTTTCGATTAATGTATAC GACATTTGTCGTGTTAAACTCAAAGATTTCTCACTCCAAGTTGGATCAGAAGACTCTGGTTGTTTGTTTCCAAGCTTGCC TTTCGATGTGACGTATGATCAAAGTTCAGGAATCGACTTTAAATGTGATCTTAACGACAATGTTGCAGCACCATGGCCGC TTTCTCCTCATTCTTCGTCTAATCCAAGCAGTGAGCTTCCAGCACTTCCTAAAGCAACATCAGATCATAAAGGGCTGCAG GATAAACTGTGCATTTCAACTTTAATATTGATGCTCACCTTGTTGCTTGTTCATTTGATGCTCAACTTAGAGTCATGA |