
Microexon ID | Os_4:11772179-11772190:+ |
Species | Oryza sativa | Coordinates | 4:11772179..11772190 |
Microexon Cluster ID | MEP29 |
Size | 12 |
Phase | 0 |
Pfam Domain Motif | TPR_12 |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 48,12,48 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | TTYTATCTTRTSCARMRSAARYTKGAWSAAGCYCRKRCWTGYTATGAGCGTGCTYTRAAGATAAARRGRCGTGTTYTGGGRSWTRRYCAYSCAGAYTATGCARAKACA |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | CGTGCTTTGAAG |
Microexon Amino Acid seq | RALK |
Microexon-tag DNA Seq | TGCTACCATCTTCAACGCAAGTTTGCTCTAGCTCAGACATGTTATGAGCGTGCTTTGAAGATAGAAGGACGTGTTATGGGGATTGGTCATCCAGAGTATGCAAGCACA |
Microexon-tag Amino Acid Seq | CYHLQRKFALAQTCYERALKIEGRVMGIGHPEYAST |
Microexon-tag spanning region | 11771585-11772997 |
Microexon-tag prediction score | 0.9498 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | Os04t0278200-01x |
Reference Transcript ID | Os04t0278200-01 |
Gene ID | Os04g0278200 |
Gene Name | NA |
Transcript ID | Os04t0278200-01 |
Protein ID | Os04t0278200-01 |
Gene ID | Os04g0278200 |
Gene Name | NA |
Pfam domain motif | TPR_12 |
Motif E-value | 2e-16 |
Motif start | 32 |
Motif end | 104 |
Protein seq | >Os04t0278200-01 MVKQRNLDEAEKFFQAALHEAKEGFGLRDPHVASALNNLAEFYRLKKEYEKAELLYLEAIEILEESFGSDDIRVGTALHS LGICYHLQRKFALAQTCYERALKIEGRVMGIGHPEYASTMYLLGKVLSQQGKDAEALIEESIRILEESGLGESPICIQRM RYLSTELIKSNRLAEAENWQRKILHNLELSKGWDSFDTTNAAELLTMTLQTMGKLKESEELLERCLEVRKRILSEEHFQV CIIFNVSRDL* |
CDS seq | >Os04t0278200-01 TTGGTCAAGCAGAGAAACCTAGATGAAGCTGAGAAGTTTTTCCAGGCAGCCCTACATGAAGCGAAAGAAGGATTTGGACT GAGAGATCCACATGTTGCGTCAGCCCTTAACAATCTGGCTGAGTTTTATAGGTTAAAGAAAGAATACGAGAAGGCTGAGC TATTGTATCTGGAAGCAATTGAAATCCTGGAAGAATCATTTGGATCGGACGATATAAGGGTTGGAACTGCTTTGCATAGT CTTGGAATATGCTACCATCTTCAACGCAAGTTTGCTCTAGCTCAGACATGTTATGAGCGTGCTTTGAAGATAGAAGGACG TGTTATGGGGATTGGTCATCCAGAGTATGCAAGCACAATGTACCTTCTTGGCAAGGTGTTAAGTCAACAAGGAAAAGATG CAGAAGCCCTTATTGAAGAGTCTATCAGGATATTGGAGGAGTCTGGGCTTGGTGAGTCACCAATATGCATACAAAGAATG AGGTATCTCTCCACGGAGTTGATAAAGTCAAATCGACTTGCTGAAGCTGAAAATTGGCAAAGGAAGATATTACATAATCT GGAACTCTCAAAGGGGTGGGATTCATTTGACACTACGAATGCAGCTGAACTCTTAACAATGACTCTTCAAACCATGGGGA AGTTGAAGGAATCTGAAGAATTATTGGAAAGATGCCTTGAAGTCAGAAAAAGGATTTTGTCTGAGGAACATTTTCAGGTT TGTATCATATTTAATGTTTCACGTGATCTTTAG |
Microexon DNA seq | NA |
Microexon Amino Acid seq | NA |
Microexon-tag DNA Seq | NA |
Microexon-tag Amino Acid seq | NA |
Transcript ID | Os04t0278200-01 |
Gene ID | Os.21938 |
Gene Name | NA |
Pfam domain motif | NA |
Motif E-value | NA |
Motif start | NA |
Motif end | NA |
Protein seq | |
CDS seq |