
Microexon ID | Zm_7:160048596-160048606:+ |
Species | Zea mays | Coordinates | 7:160048596..160048606 |
Microexon Cluster ID | MEP27 |
Size | 11 |
Phase | 1 |
Pfam Domain Motif | Gelsolin |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 49,11,48 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | MRRGADRYTGWMAGWGATCCYCAYYTGTTYDCWTKYWCWTTYWMTAAAGGRAADYTKRAGGTKRMRGARRTHTACAAYTTYWCYCARGATGAYYTGWTGACWGARGAT |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | GCAATTTGAAG |
Microexon Amino Acid seq | GNLK |
Microexon-tag DNA Seq | CAAGAACTTGAAAGTGATCCCCATCTTTTCTCATGCATCCTGTCGAAAGGCAATTTGAAGGTCAAAGAAATGCACCACTTTACTCAAGATGATTTAATGACAGAAGAT |
Microexon-tag Amino Acid Seq | QELESDPHLFSCILSKGNLKVKEMHHFTQDDLMTED |
Microexon-tag spanning region | 160048421-160048743 |
Microexon-tag prediction score | 0.949 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | Zm00001d021685_T001x |
Reference Transcript ID | Zm00001d021685_T001 |
Gene ID | Zm00001d021685 |
Gene Name | NA |
Transcript ID | Zm00001d021685_T001 |
Protein ID | NA |
Gene ID | Zm00001d021685 |
Gene Name | NA |
Pfam domain motif | NA |
Motif E-value | NA |
Motif start | NA |
Motif end | NA |
Protein seq | |
CDS seq |
Microexon DNA seq | GCAATTTGAAG |
Microexon Amino Acid seq | GNLK |
Microexon-tag DNA Seq | CAAGAACTTGAAAGTGATCCCCATCTTTTCTCATGCATCCTGTCGAAAGGCAATTTGAAGGTCAAAGAAATGCACCACTTTACTCAAGATGATTTAATGACAGAAGAT |
Microexon-tag Amino Acid seq | QELESDPHLFSCILSKGNLKVKEMHHFTQDDLMTED |
Transcript ID | Zm00001d021685_T028 |
Gene ID | Zm00001d021685 |
Gene Name | NA |
Pfam domain motif | Unknown |
Motif E-value | NA |
Motif start | NA |
Motif end | NA |
Protein seq | >Zm00001d021685_T028 MVQELESDPHLFSCILSKGNLKVKEMHHFTQDDLMTEDVFVLDCHTSIFVWVGQQVDVKLRLQALDVGEKFIVLDFLMEN LARETPIFTIMEGSEPLFFTRFFTWDLAKSLMHGNSYQRKLAIVKGGGAPALDKPKRRTSIYSGRSTAQDKSQRPRSMSF SPERVRVRGRSPAFTALAATFESSSNRNLSTPPVVKKLYPRSVTPDSSNTSKSSVIAALAGSLDRPSQTPAPAFMKDGSE SEKPKQEGDGKGVHTVATSVESLTINEDVKENEPEDEDGLPIYLYERLKTTAVDPVTEIDVTRRETYLSSTEFREKFGMT KEAFSKLPKWKRNKLKIALQLF* |
CDS seq | >Zm00001d021685_T028 ATGGTGCAAGAACTTGAAAGTGATCCCCATCTTTTCTCATGCATCCTGTCGAAAGGCAATTTGAAGGTCAAAGAAATGCA CCACTTTACTCAAGATGATTTAATGACAGAAGATGTTTTTGTTCTGGACTGTCACACGAGCATATTCGTTTGGGTTGGTC AGCAGGTGGATGTTAAACTCAGGTTACAAGCTCTGGATGTTGGGGAGAAATTTATTGTGCTTGATTTCCTTATGGAAAAC CTTGCCCGTGAAACACCAATTTTCACCATTATGGAGGGAAGCGAGCCTCTCTTCTTCACTAGATTCTTCACCTGGGACTT GGCAAAATCACTGATGCATGGAAATTCATACCAGAGGAAACTCGCAATTGTAAAAGGTGGAGGTGCTCCAGCGTTGGATA AACCGAAACGACGAACATCCATCTATTCAGGAAGGAGTACTGCACAAGATAAATCCCAACGCCCCAGAAGCATGTCCTTC AGCCCTGAGCGTGTCCGTGTTAGGGGAAGATCTCCAGCATTCACTGCATTGGCAGCTACTTTTGAAAGTTCAAGCAACAG AAATCTTTCGACTCCACCTGTAGTTAAGAAACTTTACCCGAGATCTGTTACACCTGATTCATCGAATACTTCCAAGTCAT CTGTAATTGCCGCTCTGGCTGGTTCTTTGGATCGCCCTTCTCAAACTCCTGCTCCAGCATTCATGAAAGATGGTTCTGAG TCAGAGAAGCCAAAACAGGAGGGAGATGGTAAAGGTGTTCATACTGTGGCCACTAGTGTTGAATCTCTGACTATAAATGA AGATGTAAAAGAAAACGAGCCAGAAGATGAAGACGGCCTTCCTATTTACCTGTATGAACGTCTGAAGACCACAGCTGTTG ATCCTGTCACTGAAATTGATGTCACGAGGCGAGAGACCTACTTATCTTCGACTGAATTCAGAGAGAAGTTTGGGATGACA AAGGAAGCATTTAGCAAGCTTCCGAAGTGGAAGCGGAACAAGCTAAAAATTGCTCTTCAACTTTTTTAG |