
Microexon ID | Sl_4:6183264-6183274:+ |
Species | Solanum Lycopersicum | Coordinates | 4:6183264..6183274 |
Microexon Cluster ID | MEP27 |
Size | 11 |
Phase | 1 |
Pfam Domain Motif | Gelsolin |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 49,11,48 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | MRRGADRYTGWMAGWGATCCYCAYYTGTTYDCWTKYWCWTTYWMTAAAGGRAADYTKRAGGTKRMRGARRTHTACAAYTTYWCYCARGATGAYYTGWTGACWGARGAT |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | GAAAATTTGAG |
Microexon Amino Acid seq | GKFE |
Microexon-tag DNA Seq | CCAGAAGTCTCCAGGGATCCCCACTTGTTTGCTTATTCATTTAATAAAGGAAAATTTGAGGTTGAAGAAATCTACAACTTTGCTCAAGATGATTTATTGACCGAGGAT |
Microexon-tag Amino Acid Seq | PEVSRDPHLFAYSFNKGKFEVEEIYNFAQDDLLTED |
Microexon-tag spanning region | 6183118-6183413 |
Microexon-tag prediction score | 0.9615 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | Solyc04g015830.3.1x |
Reference Transcript ID | Solyc04g015830.3.1 |
Gene ID | Solyc04g015830.3 |
Gene Name | NA |
Transcript ID | Solyc04g015830.3.1 |
Protein ID | |
Gene ID | Solyc04g015830.3 |
Gene Name | |
Pfam domain motif | Gelsolin |
Motif E-value | 2.00E-06 |
Motif start | 634 |
Motif end | 710 |
Protein seq | >Solyc04g015830.3.1 MSGSVKTLDPAFQGAGQRVGTEIWRIEDFQPVPLPKSDYGKFYSGDSYIILQTTSGKGGAYLYDIHFWLGKNTSQDEAGT AAIKTVELDVVLGGRAVQYREVQGHETDKFLSYFKPCIIPLEGGVASGFKKPEEEEFETKLYICKGKRVVRMKQVPFSRS SLNHDDVFILDTKDKIYQFNGANSNIQERAKALEVIQFLKEKYHEGTCDVAIVDDGNLQAESDSGSFWVLFGGFAPISKK VITEDDIVPEKTPPKLSSITDGQVSPVDGELSKSSLENNKCYLLDCGAEVFVWIGRVTQLEERKAAIQTAEEYLVSENRP KATRVTRVIQGYETHSFKSNFDSWPSGSAPAPEEGRGKVAALLKQQGAGVKGASKSAPVIEEVPPLLEEGGKLEVWRING NAKTPVPKEDIGKFYSGDCYVVLYNYHSHERRDDYYLCWWIGKDSIEEDQITAARLASTMCNSLKGRPVLGRVFQGKEPP QFVAIFQPMLVLKGGLSTGYKNYIADKGLNDETYTADSVALIRLSGTSVHNNKAVQVDAVPSSLNSNECFLLQSGSSLFS WHGNQSSYEQQQLAAKVAEFLKPGATVKHTKEGTESSAFWFALGGKQSYTSKKVAPEVSRDPHLFAYSFNKGKFEVEEIY NFAQDDLLTEDVLLLDTHAEVFVWVGQSADSKEKQSAFEIGQKYVEMAASLEGLSPNVPLYKITEGNEPCFFTTFFSWDP AKASAHGNSFQKKVMLLFGVGHASENQQRSNGAGGPTQRASALAALNSAFSSPSPPKSGSAPRPAGASQASSQRAAAIAA LSNVLTAEKKQSSESGSPVQSNRSSPVRSSRSSPVRSVDSGPAESDLSTAEVQDSEKVSEPKEIVEPAETNGSEPEQDEG GNESGQAIFSYEQLKAKSDNPVTGIDFKRREAYLSDEEFMSVLGMKKEAFYKLPKWKQDMHKRKTDLF* |
CDS seq | >Solyc04g015830.3.1 ATGTCTGGCTCTGTGAAAACTTTGGATCCTGCATTTCAGGGTGCAGGTCAAAGAGTAGGGACTGAAATTTGGAGAATTGA GGATTTCCAACCAGTTCCTTTGCCAAAATCTGATTATGGTAAATTTTACTCCGGAGATTCATACATCATCTTGCAGACAA CTTCAGGAAAGGGTGGTGCTTATTTGTATGATATACATTTCTGGCTTGGAAAGAATACTAGTCAGGATGAAGCTGGAACT GCAGCTATCAAAACAGTGGAGCTTGATGTGGTCCTTGGAGGGCGAGCAGTACAGTATCGAGAAGTCCAAGGTCACGAAAC TGACAAATTTTTGTCATACTTCAAACCATGTATTATACCTCTGGAGGGTGGTGTTGCATCTGGGTTCAAGAAACCAGAGG AGGAAGAATTTGAAACAAAGCTGTATATTTGCAAGGGTAAACGAGTAGTAAGGATGAAGCAGGTTCCATTCTCCCGGTCC TCTCTAAATCATGATGATGTGTTCATTCTGGACACTAAAGACAAGATATATCAATTCAATGGTGCAAACTCCAATATCCA AGAAAGGGCCAAAGCATTGGAAGTTATTCAGTTTTTGAAGGAAAAATATCATGAGGGGACGTGTGATGTTGCAATTGTTG ATGATGGAAATTTGCAAGCTGAGTCTGATTCTGGATCATTCTGGGTTTTGTTTGGTGGATTTGCTCCAATTAGCAAAAAG GTTATTACTGAAGATGATATTGTTCCCGAGAAGACACCTCCTAAACTTAGCAGCATCACTGATGGTCAAGTCAGTCCTGT AGATGGTGAACTTTCAAAGTCTAGCTTGGAAAACAATAAATGCTATCTTTTGGATTGCGGTGCTGAGGTGTTTGTTTGGA TTGGTCGTGTAACTCAACTGGAGGAGAGGAAAGCTGCCATTCAAACTGCAGAGGAATATCTTGTCTCTGAAAATAGACCC AAGGCAACGCGTGTAACCCGGGTTATTCAAGGTTATGAAACCCATTCATTCAAGTCCAACTTTGACTCTTGGCCATCAGG ATCTGCACCTGCCCCTGAAGAGGGAAGAGGAAAAGTAGCAGCTTTGCTGAAGCAGCAAGGTGCTGGCGTCAAAGGTGCCA GCAAAAGTGCTCCTGTAATTGAGGAAGTGCCTCCGTTGCTTGAAGAGGGTGGAAAATTAGAGGTATGGCGCATAAATGGT AATGCAAAGACACCTGTCCCAAAAGAAGATATTGGTAAATTCTACAGTGGAGATTGCTATGTGGTTCTCTACAACTACCA TTCTCATGAAAGGAGAGACGATTACTATCTATGTTGGTGGATTGGAAAGGATAGTATTGAGGAGGACCAAATCACGGCTG CTCGATTGGCCAGTACAATGTGCAATTCACTCAAAGGAAGACCTGTGCTGGGTCGAGTGTTTCAAGGGAAAGAACCTCCA CAGTTTGTTGCAATCTTCCAGCCCATGTTGGTCCTTAAGGGTGGTTTGAGCACTGGCTACAAAAACTATATTGCTGACAA AGGCTTGAATGATGAAACCTATACTGCTGATTCAGTTGCACTTATTCGGTTATCTGGAACTTCTGTGCATAATAACAAAG CGGTTCAAGTGGATGCTGTGCCAAGTTCACTGAACTCTAATGAGTGTTTTCTTCTGCAATCTGGCTCTTCATTATTCAGT TGGCATGGTAACCAGAGTTCTTATGAGCAGCAGCAATTAGCAGCAAAGGTTGCAGAATTCTTGAAGCCAGGAGCAACAGT GAAACACACTAAAGAAGGAACAGAGAGCTCTGCTTTCTGGTTTGCCCTTGGAGGAAAACAAAGTTATACCAGCAAGAAAG TGGCTCCAGAAGTCTCCAGGGATCCCCACTTGTTTGCTTATTCATTTAATAAAGGAAAATTTGAGGTTGAAGAAATCTAC AACTTTGCTCAAGATGATTTATTGACCGAGGATGTCTTACTACTCGACACACATGCTGAAGTGTTTGTTTGGGTTGGTCA GTCAGCAGACTCCAAAGAAAAGCAGAGCGCTTTTGAAATTGGACAGAAATACGTGGAGATGGCTGCATCTTTGGAAGGAT TATCACCAAATGTTCCACTCTATAAAATCACAGAAGGAAATGAACCTTGCTTTTTTACAACATTTTTCTCATGGGATCCT GCAAAAGCCAGTGCTCATGGAAACTCATTCCAGAAGAAGGTTATGCTACTCTTTGGGGTTGGTCATGCTTCAGAGAATCA GCAAAGGTCAAATGGGGCAGGTGGGCCAACCCAAAGGGCTTCAGCGTTAGCTGCTTTAAACTCGGCTTTCAGTTCCCCAT CTCCCCCAAAATCTGGTTCTGCACCGAGGCCTGCTGGAGCAAGTCAGGCTTCTTCACAAAGAGCAGCTGCAATAGCTGCA TTATCTAACGTTCTTACAGCTGAGAAAAAGCAGTCGAGTGAGAGTGGTTCTCCTGTCCAATCAAACAGAAGCTCACCTGT ACGATCAAGCAGAAGCTCTCCTGTTCGATCAGTAGACTCTGGCCCTGCTGAAAGTGATCTTTCTACTGCTGAGGTCCAAG ATTCCGAAAAAGTTTCAGAACCTAAGGAGATTGTTGAGCCTGCTGAAACTAATGGGTCAGAACCAGAGCAGGATGAGGGT GGAAATGAAAGTGGTCAAGCTATATTTAGTTATGAACAGCTGAAGGCTAAATCTGACAACCCTGTCACCGGGATTGATTT TAAGCGAAGAGAGGCCTATCTATCGGATGAAGAATTTATGTCTGTACTTGGTATGAAGAAAGAAGCATTCTACAAGTTGC CTAAATGGAAACAAGATATGCACAAAAGGAAAACTGATCTCTTCTAG |
Sl_4:6183264-6183274:+ does not have available information here.