
Microexon ID | Os_6:27138029-27138039:- |
Species | Oryza sativa | Coordinates | 6:27138029..27138039 |
Microexon Cluster ID | MEP27 |
Size | 11 |
Phase | 1 |
Pfam Domain Motif | Gelsolin |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 49,11,48 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | MRRGADRYTGWMAGWGATCCYCAYYTGTTYDCWTKYWCWTTYWMTAAAGGRAADYTKRAGGTKRMRGARRTHTACAAYTTYWCYCARGATGAYYTGWTGACWGARGAT |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | GAGTGCTTAAG |
Microexon Amino Acid seq | GVLK |
Microexon-tag DNA Seq | AAAGATCAAGAAAGTGATCCTCATTTGTTCTCTTGTACTTTTTCAAAGGGAGTGCTTAAGGTTAGAGAAATATTCAACTTTACTCAAGATGATTTGATGACAGAGGAC |
Microexon-tag Amino Acid Seq | KDQESDPHLFSCTFSKGVLKVREIFNFTQDDLMTED |
Microexon-tag spanning region | 27137893-27138223 |
Microexon-tag prediction score | 0.961 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | Os06t0659300-01x |
Reference Transcript ID | Os06t0659300-01 |
Gene ID | Os06g0659300 |
Gene Name | VLN3 |
Transcript ID | Os06t0659300-01 |
Protein ID | Os06t0659300-01 |
Gene ID | Os06g0659300 |
Gene Name | VLN3 |
Pfam domain motif | Unknown |
Motif E-value | NA |
Motif start | NA |
Motif end | NA |
Protein seq | >Os06t0659300-01 MVPKKVWGVQQLNPMPHARSATGEHTFSSLLKQKSPKTSPTKPRGSMAVSMREVDAVFQGAGQKDGLEIWRIEKLQAVPV PKESHGRFFTGDSYVILKTTALKNGSFRHDIHYWLGKDTSQDEAGTAAIKTVELDAALGGRAVQYREVQGNETERFLSYF KPCIIPEEGGIASGFRHTEINEREHVTRLFVCRGKHTVHVKEVPFARSSLNHDDIFILDTKSKIFQFNGSNSSIQERAKA LEVVQYLKDSNHEGKCDVGSVEDGKLMADADAGEFWGLFGGFAPLPRKTFSDLNGKDSAFSSKLICLNKGQTVPVDFDVL TRELLDSTKCYLLDCGSEIYVWMGRETPLEERKRAGSAAEELLREVNRPKSHIVRLMEGFETVIFRSKFSKWPKKADAVV SDESRGKVAALLKRQGFNVKGLAKAAPVKEEPQPQIDCTGNLQVWRVNGTEKTFLSFSEQCKFYSGDCYIFQYSYPGEEG EECLIGTWFGKKSVQDEKTTAISVASKMVESLKFQAVMVRLYEGKEPAEFFSIFQNLVIFKGGVSTGYKKFVSENGIEDD TYSENGVALFRVQGSGPENMQAIQVDTAATSLNSSYCYVLHDGDTLFTWIGNLSSSMDQELAERQLDVIKPNLQSRMLKE GSEYDQFWKLLGVKSEYPSQKIAKDQESDPHLFSCTFSKGVLKVREIFNFTQDDLMTEDVFILDCHSCVFVWVGQRVDTK MRAQALSVGEKFLELDILMENSSQETPVYVITEGSEPQFFTRFFTWDSAKSAMHGNSFERRLSIVKDGVKPKLDKPKRRP TTSSSHTGRSSVPEKSQRSRSMSFSPDRVRVRGRSPAFNALAANFENPNARNLSTPPPAIRKPSPKSPSSDPTKPPQRAA SIAAISASFERPRPTLIPKSIKASPDVNKPQVEASKPKPEANGKDSTPSKDSPTVTPTIQEDLKEGQPENEEGLPVYPYE RLRTSSINPVTDIDVTKRETYLSAAEFRERFGMTKEAFAKLPKWKQNRLKIALQLF* |
CDS seq | >Os06t0659300-01 ATGGTTCCCAAAAAGGTTTGGGGGGTTCAACAGCTGAACCCCATGCCCCATGCTAGATCCGCCACTGGGGAGCACACATT TTCTTCTCTCCTGAAGCAAAAATCACCCAAGACCAGCCCTACAAAACCTAGGGGTTCTATGGCTGTTTCAATGAGGGAAG TGGATGCGGTCTTTCAAGGGGCTGGTCAAAAAGATGGATTGGAAATATGGCGGATTGAAAAACTGCAAGCTGTTCCAGTT CCCAAGGAATCACATGGGAGATTTTTCACAGGAGATTCCTATGTGATATTGAAGACAACCGCTCTTAAAAATGGTTCTTT TCGGCATGATATCCATTATTGGCTTGGTAAAGATACCAGTCAGGATGAAGCTGGTACAGCTGCAATCAAGACTGTGGAAT TGGATGCTGCTCTTGGTGGACGTGCTGTTCAATACCGTGAAGTACAGGGGAATGAGACAGAGAGATTTCTTTCATATTTT AAACCTTGTATTATACCAGAGGAAGGTGGAATTGCATCTGGTTTCAGGCATACTGAAATCAATGAACGGGAGCATGTGAC AAGGTTATTTGTCTGCAGAGGAAAGCATACAGTCCATGTCAAAGAGGTTCCGTTTGCAAGATCATCGCTGAACCATGATG ATATATTTATTTTAGATACAAAGTCCAAAATATTCCAGTTCAATGGATCGAATTCAAGTATTCAGGAGAGGGCTAAAGCC CTTGAGGTTGTGCAATATTTGAAAGACAGCAACCATGAGGGCAAATGTGACGTAGGTTCAGTTGAGGACGGCAAGCTGAT GGCAGATGCTGACGCCGGTGAATTCTGGGGTCTCTTTGGTGGATTTGCACCTCTTCCAAGAAAAACCTTTTCTGATCTTA ATGGAAAAGATTCTGCTTTCTCTTCGAAGTTGATCTGTCTAAATAAGGGTCAGACAGTACCAGTTGATTTTGATGTTCTA ACAAGAGAGTTGCTAGATTCAACAAAGTGCTATCTGCTAGACTGTGGATCTGAAATTTATGTCTGGATGGGTAGAGAGAC ACCACTCGAAGAGAGGAAACGGGCAGGATCTGCTGCAGAGGAATTACTTCGTGAAGTAAACAGGCCAAAATCTCATATTG TTCGTCTCATGGAAGGATTTGAGACTGTCATATTCCGATCAAAATTCAGTAAATGGCCTAAGAAAGCTGATGCTGTTGTG TCTGATGAGAGCAGAGGAAAAGTTGCAGCTCTTCTTAAGCGGCAAGGATTTAATGTTAAGGGTCTTGCAAAAGCTGCTCC TGTGAAGGAAGAGCCTCAACCTCAAATTGATTGCACAGGCAACCTGCAGGTTTGGCGTGTAAATGGCACTGAAAAGACAT TCCTTTCATTCTCTGAGCAATGCAAATTCTACAGTGGGGACTGTTATATCTTTCAATATAGCTATCCTGGTGAGGAAGGC GAGGAGTGTCTCATTGGTACTTGGTTCGGGAAAAAGAGTGTTCAGGACGAGAAGACTACAGCCATTTCAGTTGCTAGCAA GATGGTTGAGTCTCTGAAATTTCAGGCAGTCATGGTTCGCCTTTATGAAGGAAAGGAACCAGCTGAGTTTTTCTCAATAT TTCAGAACCTGGTTATCTTCAAGGGTGGTGTTAGTACTGGGTATAAGAAATTTGTCTCAGAAAACGGTATTGAGGATGAC ACATATTCAGAAAATGGGGTTGCCCTTTTCCGGGTTCAAGGCTCTGGACCAGAAAATATGCAAGCCATTCAAGTTGATAC GGCTGCTACCTCGCTGAACTCTTCTTATTGTTATGTACTACATGATGGAGATACACTATTTACATGGATTGGGAATTTAA GCTCGTCAATGGATCAAGAGCTTGCTGAGAGGCAGCTGGATGTGATCAAGCCAAATCTTCAGTCCAGAATGCTCAAGGAA GGGTCAGAATATGATCAGTTTTGGAAGCTACTTGGAGTCAAGTCAGAGTACCCCAGCCAGAAGATTGCAAAAGATCAAGA AAGTGATCCTCATTTGTTCTCTTGTACTTTTTCAAAGGGAGTGCTTAAGGTTAGAGAAATATTCAACTTTACTCAAGATG ATTTGATGACAGAGGACGTTTTTATTTTGGACTGTCATTCATGTGTCTTCGTATGGGTTGGACAACGTGTGGACACAAAA ATGCGAGCACAAGCTTTGAGCGTTGGAGAGAAATTTTTAGAACTTGACATTTTGATGGAGAACTCATCACAAGAAACACC AGTTTATGTCATCACTGAAGGGAGTGAGCCCCAATTTTTCACCAGGTTCTTCACTTGGGACTCTGCAAAATCAGCCATGC ATGGAAACTCATTTGAAAGGAGGTTATCTATAGTGAAGGATGGAGTAAAACCAAAATTAGATAAACCTAAAAGAAGGCCA ACGACATCATCATCACACACTGGACGATCCAGTGTACCTGAAAAATCTCAGCGCTCCAGAAGTATGTCGTTCAGTCCTGA CCGTGTAAGAGTCAGAGGAAGATCCCCAGCATTCAATGCATTAGCTGCTAACTTTGAGAACCCAAATGCTCGGAATCTAT CAACACCTCCACCAGCTATCAGAAAACCATCTCCGAAGTCCCCCTCTTCAGATCCTACAAAGCCACCTCAACGAGCTGCT TCAATTGCTGCAATTTCTGCTTCTTTCGAGCGACCTAGGCCAACTCTGATACCAAAGTCAATCAAAGCGAGTCCTGATGT AAACAAGCCCCAAGTTGAAGCAAGCAAGCCTAAACCAGAGGCAAATGGCAAGGATAGTACCCCTTCAAAGGATAGCCCAA CAGTAACTCCAACGATACAGGAAGATCTGAAGGAGGGACAGCCAGAAAACGAGGAAGGGCTCCCAGTGTATCCATACGAA CGCTTGAGGACATCTTCCATCAATCCTGTGACAGACATTGATGTGACTAAGCGTGAGACATATCTATCTGCGGCGGAGTT CAGGGAAAGGTTTGGGATGACAAAGGAAGCTTTTGCGAAGCTACCAAAGTGGAAGCAGAATAGGTTAAAGATTGCCCTTC AGCTGTTTTAA |
Microexon DNA seq | GAGTGCTTAAG |
Microexon Amino Acid seq | GVLK |
Microexon-tag DNA Seq | AAAGATCAAGAAAGTGATCCTCATTTGTTCTCTTGTACTTTTTCAAAGGGAGTGCTTAAGGTTAGAGAAATATTCAACTTTACTCAAGATGATTTGATGACAGAGGAC |
Microexon-tag Amino Acid seq | KDQESDPHLFSCTFSKGVLKVREIFNFTQDDLMTED |
Transcript ID | Os.30468.1 |
Gene ID | Os.30468 |
Gene Name | VLN3 |
Pfam domain motif | Unknown |
Motif E-value | NA |
Motif start | NA |
Motif end | NA |
Protein seq | >Os.30468.1 MAVSMREVDAVFQGAGQKDGLEIWRIEKLQAVPVPKESHGRFFTGDSYVILKTTALKNGSFRHDIHYWLGKDTSQDEAGT AAIKTVELDAALGGRAVQYREVQGNETERFLSYFKPCIIPEEGGIASGFRHTEINEREHVTRLFVCRGKHTVHVKEVPFA RSSLNHDDIFILDTKSKIFQFNGSNSSIQERAKALEVVQYLKDSNHEGKCDVGSVEDGKLMADADAGEFWGLFGGFAPLP RKTFSDLNGKDSAFSSKLICLNKGQTVPVDFDVLTRELLDSTKCYLLDCGSEIYVWMGRETPLEERKRAGSAAEELLREV NRPKSHIVRLMEGFETVIFRSKFSKWPKKADAVVSDESRGKVAALLKRQGFNVKGLAKAAPVKEEPQPQIDCTGNLQVWR VNGTEKTFLSFSEQCKFYSGDCYIFQYSYPGEEGEECLIGTWFGKKSVQDEKTTAISVASKMVESLKFQAVMVRLYEGKE PAEFFSIFQNLVIFKGGVSTGYKKFVSENGIEDDTYSENGVALFRVQGSGPENMQAIQVDTAATSLNSSYCYVLHDGDTL FTWIGNLSSSMDQELAERQLDVIKPNLQSRMLKEGSEYDQFWKLLGVKSEYPSQKIAKDQESDPHLFSCTFSKGVLKVRE IFNFTQDDLMTEDVFILDCHSCVFVWVGQRVDTKMRAQALSVGEKFLELDILMENSSQETPVYVITEGSEPQFFTRFFTW DSAKSAMHGNSFERRLSIVKDGVKPKLDKPKRRPTTSSSHTGRSSVPEKSQRSRSMSFSPDRVRVRGRSPAFNALAANFE NPNARNLSTPPPAIRKPSPKSPSSDPTKPPQRAASIAAISASFERPRPTLIPKSIKASPDVNKPQVEASKPKPEANGKDS TPSKDSPTVTPTIQEDLKEGQPENEEGLPVYPYERLRTSSINPVTDIDVTKRETYLSAAEFRERFGMTKEAFAKLPKWKQ NRLKIALQLF* |
CDS seq | >Os.30468.1 ATGGCTGTTTCAATGAGGGAAGTGGATGCGGTCTTTCAAGGGGCTGGTCAAAAAGATGGATTGGAAATATGGCGGATTGA AAAACTGCAAGCTGTTCCAGTTCCCAAGGAATCACATGGGAGATTTTTCACAGGAGATTCCTATGTGATATTGAAGACAA CCGCTCTTAAAAATGGTTCTTTTCGGCATGATATCCATTATTGGCTTGGTAAAGATACCAGTCAGGATGAAGCTGGTACA GCTGCAATCAAGACTGTGGAATTGGATGCTGCTCTTGGTGGACGTGCTGTTCAATACCGTGAAGTACAGGGGAATGAGAC AGAGAGATTTCTTTCATATTTTAAACCTTGTATTATACCAGAGGAAGGTGGAATTGCATCTGGTTTCAGGCATACTGAAA TCAATGAACGGGAGCATGTGACAAGGTTATTTGTCTGCAGAGGAAAGCATACAGTCCATGTCAAAGAGGTTCCGTTTGCA AGATCATCGCTGAACCATGATGATATATTTATTTTAGATACAAAGTCCAAAATATTCCAGTTCAATGGATCGAATTCAAG TATTCAGGAGAGGGCTAAAGCCCTTGAGGTTGTGCAATATTTGAAAGACAGCAACCATGAGGGCAAATGTGACGTAGGTT CAGTTGAGGACGGCAAGCTGATGGCAGATGCTGACGCCGGTGAATTCTGGGGTCTCTTTGGTGGATTTGCACCTCTTCCA AGAAAAACCTTTTCTGATCTTAATGGAAAAGATTCTGCTTTCTCTTCGAAGTTGATCTGTCTAAATAAGGGTCAGACAGT ACCAGTTGATTTTGATGTTCTAACAAGAGAGTTGCTAGATTCAACAAAGTGCTATCTGCTAGACTGTGGATCTGAAATTT ATGTCTGGATGGGTAGAGAGACACCACTCGAAGAGAGGAAACGGGCAGGATCTGCTGCAGAGGAATTACTTCGTGAAGTA AACAGGCCAAAATCTCATATTGTTCGTCTCATGGAAGGATTTGAGACTGTCATATTCCGATCAAAATTCAGTAAATGGCC TAAGAAAGCTGATGCTGTTGTGTCTGATGAGAGCAGAGGAAAAGTTGCAGCTCTTCTTAAGCGGCAAGGATTTAATGTTA AGGGTCTTGCAAAAGCTGCTCCTGTGAAGGAAGAGCCTCAACCTCAAATTGATTGCACAGGCAACCTGCAGGTTTGGCGT GTAAATGGCACTGAAAAGACATTCCTTTCATTCTCTGAGCAATGCAAATTCTACAGTGGGGACTGTTATATCTTTCAATA TAGCTATCCTGGTGAGGAAGGCGAGGAGTGTCTCATTGGTACTTGGTTCGGGAAAAAGAGTGTTCAGGACGAGAAGACTA CAGCCATTTCAGTTGCTAGCAAGATGGTTGAGTCTCTGAAATTTCAGGCAGTCATGGTTCGCCTTTATGAAGGAAAGGAA CCAGCTGAGTTTTTCTCAATATTTCAGAACCTGGTTATCTTCAAGGGTGGTGTTAGTACTGGGTATAAGAAATTTGTCTC AGAAAACGGTATTGAGGATGACACATATTCAGAAAATGGGGTTGCCCTTTTCCGGGTTCAAGGCTCTGGACCAGAAAATA TGCAAGCCATTCAAGTTGATACGGCTGCTACCTCGCTGAACTCTTCTTATTGTTATGTACTACATGATGGAGATACACTA TTTACATGGATTGGGAATTTAAGCTCGTCAATGGATCAAGAGCTTGCTGAGAGGCAGCTGGATGTGATCAAGCCAAATCT TCAGTCCAGAATGCTCAAGGAAGGGTCAGAATATGATCAGTTTTGGAAGCTACTTGGAGTCAAGTCAGAGTACCCCAGCC AGAAGATTGCAAAAGATCAAGAAAGTGATCCTCATTTGTTCTCTTGTACTTTTTCAAAGGGAGTGCTTAAGGTTAGAGAA ATATTCAACTTTACTCAAGATGATTTGATGACAGAGGACGTTTTTATTTTGGACTGTCATTCATGTGTCTTCGTATGGGT TGGACAACGTGTGGACACAAAAATGCGAGCACAAGCTTTGAGCGTTGGAGAGAAATTTTTAGAACTTGACATTTTGATGG AGAACTCATCACAAGAAACACCAGTTTATGTCATCACTGAAGGGAGTGAGCCCCAATTTTTCACCAGGTTCTTCACTTGG GACTCTGCAAAATCAGCCATGCATGGAAACTCATTTGAAAGGAGGTTATCTATAGTGAAGGATGGAGTAAAACCAAAATT AGATAAACCTAAAAGAAGGCCAACGACATCATCATCACACACTGGACGATCCAGTGTACCTGAAAAATCTCAGCGCTCCA GAAGTATGTCGTTCAGTCCTGACCGTGTAAGAGTCAGAGGAAGATCCCCAGCATTCAATGCATTAGCTGCTAACTTTGAG AACCCAAATGCTCGGAATCTATCAACACCTCCACCAGCTATCAGAAAACCATCTCCGAAGTCCCCCTCTTCAGATCCTAC AAAGCCACCTCAACGAGCTGCTTCAATTGCTGCAATTTCTGCTTCTTTCGAGCGACCTAGGCCAACTCTGATACCAAAGT CAATCAAAGCGAGTCCTGATGTAAACAAGCCCCAAGTTGAAGCAAGCAAGCCTAAACCAGAGGCAAATGGCAAGGATAGT ACCCCTTCAAAGGATAGCCCAACAGTAACTCCAACGATACAGGAAGATCTGAAGGAGGGACAGCCAGAAAACGAGGAAGG GCTCCCAGTGTATCCATACGAACGCTTGAGGACATCTTCCATCAATCCTGTGACAGACATTGATGTGACTAAGCGTGAGA CATATCTATCTGCGGCGGAGTTCAGGGAAAGGTTTGGGATGACAAAGGAAGCTTTTGCGAAGCTACCAAAGTGGAAGCAG AATAGGTTAAAGATTGCCCTTCAGCTGTTTTAA |