Microexon ID Bn_scaffoldA05:1552989-1552999:-
Species Brassica   Napus
Coordinates scaffoldA05:1552989..1552999
Microexon Cluster ID MEP27
Size 11
Phase 1
Pfam Domain Motif Gelsolin
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) 49,11,48
Microexon location in the Microexon-tag 2
Microexon-tag DNA Seq MRRGADRYTGWMAGWGATCCYCAYYTGTTYDCWTKYWCWTTYWMTAAAGGRAADYTKRAGGTKRMRGARRTHTACAAYTTYWCYCARGATGAYYTGWTGACWGARGAT
Logo of Microexon-tag DNA Seq NT60 Logo
Alignment of exons MSA
Microexon DNA seq GAAAGTTTCAG
Microexon Amino Acid seq GKFQ
Microexon-tag DNA Seq TCTGAGACTGTCAGAGATCCTCACTTATACTCATTTTCTATCAACAGAGGAAAGTTTCAGGTTGAAGAGATCTACAACTTTGCTCAAGATGACCTCTTGACAGAGGAT
Microexon-tag Amino Acid Seq SETVRDPHLYSFSINRGKFQVEEIYNFAQDDLLTED
Microexon-tag spanning region1552860-1553161
Microexon-tag prediction score0.9628
Overlapped with the annotated transcript (%) 100
New Transcript ID BnaA05T0026800ZSx
Reference Transcript ID BnaA05T0026800ZS
Gene ID BnaA05G0026800ZS
Gene Name NA
Transcript ID BnaA05T0026800ZS
Protein ID
Gene ID BnaA05G0026800ZS
Gene Name
Pfam domain motif Gelsolin
Motif E-value 9.40E-06
Motif start 635
Motif end 676
Protein seq >BnaA05T0026800ZS
MSGSTKVLDPAFQGAGQKPGTEIWRIENFEAVPVPKSEHGKFYMGDTYIVLQTTQNKGGAYLFDIHFWIGKDTSQDEAGT
AAVKTVELDAVLGGRAVQHREIQGHESDKFLSYFKPCIIPLEGGVASGFKTPEEEVFETRLYTCKGKRAIRLKQVPFARS
SLNHDDVFILDTKEKIYQFNGANSNIQERAKALEVVQYLKDKYHEGTCDVAIVDDGKLDTESDSGEFWVLFGGFAPIGRK
VANDDDIIPESTPPKLYSVIDGQMEAIDGDLTKSMLENTKCYLLDCGAEVFIWVGRVTQVDERKAASQSVEDYLASENRP
KATRVTRVIQGYESHSFKSNFDSWPSGSSAPSNEEGRGKVAALLKQQGVGLKGIAKSAPVNEDVPPLLEAGGKLEVWYVN
GKAKTPLPKEDIGKLYSGDCYLVLYTYHSGDRKDEFFLCCWFGKNSTQDDQETALRLANTMSNSLKGRPVQGRIYEGKEP
PQFVALFQPMIILKGGLSSGYKNMVEEKGSADETYTPDSIALIQVSGTGVHNHKALQVEPVATSLNSYECFLLQSGTSMF
LWHGNQSAHELLELAAKVAEILKPGMTLKHAKEGTESSTFWFALGGKQNFTSKKAASETVRDPHLYSFSINRGKFQVEEI
YNFAQDDLLTEDVYLLDTHAEVFVWVGQCVDPKEKQTVFEIGQKYVERAGSLEGLSPKVPLYKITEGNEPCFFTTYFSWD
STKATVQGNSFQKKAALLFGTHHVVEDKSSGGNQGLRQRAEALAALNSAFNSSGSKPSYSSQDRSSGSQEGPRQRAEALA
ALTSAFNSSGPSSKSPPPPRPAGTSQASQRAAAVAALSQVLVAENPKSTDTSPTRRSTSSNPADENEEADASEEASHETK
VEEEVSPAVEEPEAKQEETAEQDDSVIDASGATFTYEQLRAKSEIPVTGIDFKQREAYLSEEEFQSVFGMEKEAFNNLPR
WKQDLLKRKFDLF*
CDS seq >BnaA05T0026800ZS
ATGTCTGGGTCAACGAAAGTACTGGATCCTGCTTTTCAAGGAGCTGGACAGAAACCAGGAACTGAAATATGGAGAATCGA
GAATTTTGAAGCTGTTCCAGTGCCAAAGTCTGAGCATGGAAAGTTTTATATGGGAGACACTTACATTGTCTTGCAGACCA
CACAGAACAAAGGAGGTGCGTATCTGTTTGATATTCATTTCTGGATTGGGAAAGACACTAGTCAGGATGAAGCTGGAACA
GCAGCTGTTAAGACAGTTGAACTCGACGCGGTTCTCGGAGGCCGTGCTGTCCAACACAGGGAGATTCAAGGTCACGAGTC
TGACAAATTCTTGTCTTACTTCAAGCCATGTATTATACCTTTAGAGGGTGGTGTTGCGTCTGGTTTCAAAACACCTGAAG
AAGAGGTGTTCGAAACACGGTTGTATACTTGCAAAGGCAAACGTGCAATCCGTTTGAAGCAGGTTCCTTTTGCCCGCTCA
TCGCTGAATCATGATGATGTGTTTATCTTGGACACCAAGGAAAAGATCTACCAGTTCAACGGTGCTAATTCAAACATCCA
GGAGAGAGCCAAAGCTTTGGAAGTCGTTCAGTATTTGAAAGACAAGTATCATGAAGGAACTTGTGATGTTGCTATTGTTG
ATGATGGAAAGTTAGATACAGAATCAGATTCTGGTGAGTTTTGGGTCCTCTTTGGTGGTTTTGCTCCAATAGGAAGGAAA
GTTGCTAATGATGATGATATCATCCCTGAATCAACTCCACCTAAGCTTTACAGCGTCATTGATGGTCAGATGGAAGCTAT
AGACGGTGATCTAACCAAGTCTATGCTGGAGAACACTAAGTGTTACCTCTTGGACTGTGGTGCTGAGGTTTTTATCTGGG
TTGGCCGAGTAACTCAAGTGGATGAGAGGAAAGCTGCTAGTCAATCTGTTGAGGACTATCTTGCAAGTGAAAACAGGCCA
AAGGCAACACGTGTCACACGTGTCATCCAAGGCTATGAGTCTCACTCTTTCAAGTCTAACTTTGACTCTTGGCCATCAGG
CTCATCCGCTCCTAGTAACGAAGAAGGACGAGGAAAAGTCGCTGCTTTGTTGAAGCAACAAGGTGTTGGGCTCAAGGGGA
TTGCGAAAAGTGCACCAGTGAATGAGGATGTTCCACCTCTTCTTGAAGCTGGTGGAAAGTTGGAGGTTTGGTATGTTAAT
GGCAAAGCTAAGACTCCGTTACCTAAAGAAGATATTGGGAAGCTCTATTCTGGGGACTGCTATTTGGTCCTTTACACCTA
TCATTCTGGTGATAGGAAAGACGAGTTTTTCTTGTGCTGCTGGTTTGGAAAGAATAGTACTCAGGATGACCAAGAAACAG
CACTTAGACTGGCGAATACAATGTCAAACTCGTTGAAGGGAAGACCTGTGCAGGGCCGTATATACGAGGGTAAAGAGCCT
CCACAGTTTGTTGCTCTGTTCCAGCCTATGATTATCCTAAAGGGTGGTTTGAGCTCTGGGTACAAGAACATGGTGGAAGA
GAAAGGTTCAGCAGATGAAACCTACACACCAGACTCGATTGCACTGATTCAAGTATCTGGAACTGGAGTTCACAATCATA
AGGCACTTCAAGTTGAACCGGTGGCAACATCTTTAAACTCTTATGAGTGCTTCCTACTGCAATCTGGTACTTCCATGTTC
CTATGGCATGGAAACCAAAGTGCGCATGAACTGCTGGAACTAGCTGCTAAAGTTGCTGAGATCTTGAAGCCTGGGATGAC
TCTCAAGCATGCCAAAGAAGGAACAGAGAGCTCAACCTTTTGGTTTGCACTTGGAGGAAAGCAGAACTTCACCAGCAAGA
AGGCAGCATCTGAGACTGTCAGAGATCCTCACTTATACTCATTTTCTATCAACAGAGGAAAGTTTCAGGTTGAAGAGATC
TACAACTTTGCTCAAGATGACCTCTTGACAGAGGATGTATATTTGCTCGACACTCATGCTGAAGTCTTTGTCTGGGTTGG
TCAATGTGTTGACCCCAAGGAGAAGCAAACTGTGTTTGAGATTGGCCAAAAATACGTTGAACGTGCTGGATCCTTGGAGG
GCTTGTCTCCTAAAGTTCCACTCTACAAAATTACCGAAGGGAACGAGCCATGCTTCTTCACCACTTACTTTTCTTGGGAC
TCCACTAAAGCTACTGTGCAAGGAAATTCATTCCAGAAGAAAGCAGCCTTGTTATTTGGCACTCACCACGTTGTGGAGGA
TAAGTCTAGCGGTGGGAACCAAGGACTAAGGCAAAGAGCTGAAGCACTAGCTGCCTTGAATTCTGCATTTAATTCTTCTG
GTAGCAAGCCATCATATTCGAGCCAGGACAGATCAAGCGGAAGTCAAGAGGGTCCAAGACAAAGAGCTGAAGCTTTAGCC
GCCTTGACATCAGCGTTCAATTCTTCTGGACCATCATCTAAATCTCCTCCACCACCGAGGCCAGCGGGAACGAGCCAGGC
TTCACAGAGGGCAGCAGCAGTGGCTGCTCTCTCCCAAGTTCTCGTTGCTGAGAATCCGAAATCAACTGATACCTCTCCTA
CAAGAAGATCCACTAGCTCCAACCCAGCAGATGAGAATGAAGAAGCAGATGCTTCAGAAGAAGCTAGTCATGAAACCAAG
GTAGAAGAGGAAGTTTCACCTGCAGTAGAAGAGCCAGAAGCAAAGCAGGAGGAAACAGCGGAGCAAGATGATTCTGTTAT
AGACGCAAGTGGTGCAACTTTCACCTATGAACAGCTGAGAGCTAAATCTGAAATCCCTGTGACTGGAATCGATTTCAAGC
AAAGAGAGGCTTATCTATCTGAGGAAGAGTTCCAGAGTGTGTTTGGGATGGAGAAAGAAGCATTCAACAACTTACCTCGG
TGGAAGCAAGATCTGCTCAAGAGGAAATTCGACTTGTTCTAG
Bn_scaffoldA05:1552989-1552999:- does not have available information here.