
Microexon ID | Bn_scaffoldA05:1552989-1552999:- |
Species | Brassica Napus | Coordinates | scaffoldA05:1552989..1552999 |
Microexon Cluster ID | MEP27 |
Size | 11 |
Phase | 1 |
Pfam Domain Motif | Gelsolin |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 49,11,48 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | MRRGADRYTGWMAGWGATCCYCAYYTGTTYDCWTKYWCWTTYWMTAAAGGRAADYTKRAGGTKRMRGARRTHTACAAYTTYWCYCARGATGAYYTGWTGACWGARGAT |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | GAAAGTTTCAG |
Microexon Amino Acid seq | GKFQ |
Microexon-tag DNA Seq | TCTGAGACTGTCAGAGATCCTCACTTATACTCATTTTCTATCAACAGAGGAAAGTTTCAGGTTGAAGAGATCTACAACTTTGCTCAAGATGACCTCTTGACAGAGGAT |
Microexon-tag Amino Acid Seq | SETVRDPHLYSFSINRGKFQVEEIYNFAQDDLLTED |
Microexon-tag spanning region | 1552860-1553161 |
Microexon-tag prediction score | 0.9628 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | BnaA05T0026800ZSx |
Reference Transcript ID | BnaA05T0026800ZS |
Gene ID | BnaA05G0026800ZS |
Gene Name | NA |
Transcript ID | BnaA05T0026800ZS |
Protein ID | |
Gene ID | BnaA05G0026800ZS |
Gene Name | |
Pfam domain motif | Gelsolin |
Motif E-value | 9.40E-06 |
Motif start | 635 |
Motif end | 676 |
Protein seq | >BnaA05T0026800ZS MSGSTKVLDPAFQGAGQKPGTEIWRIENFEAVPVPKSEHGKFYMGDTYIVLQTTQNKGGAYLFDIHFWIGKDTSQDEAGT AAVKTVELDAVLGGRAVQHREIQGHESDKFLSYFKPCIIPLEGGVASGFKTPEEEVFETRLYTCKGKRAIRLKQVPFARS SLNHDDVFILDTKEKIYQFNGANSNIQERAKALEVVQYLKDKYHEGTCDVAIVDDGKLDTESDSGEFWVLFGGFAPIGRK VANDDDIIPESTPPKLYSVIDGQMEAIDGDLTKSMLENTKCYLLDCGAEVFIWVGRVTQVDERKAASQSVEDYLASENRP KATRVTRVIQGYESHSFKSNFDSWPSGSSAPSNEEGRGKVAALLKQQGVGLKGIAKSAPVNEDVPPLLEAGGKLEVWYVN GKAKTPLPKEDIGKLYSGDCYLVLYTYHSGDRKDEFFLCCWFGKNSTQDDQETALRLANTMSNSLKGRPVQGRIYEGKEP PQFVALFQPMIILKGGLSSGYKNMVEEKGSADETYTPDSIALIQVSGTGVHNHKALQVEPVATSLNSYECFLLQSGTSMF LWHGNQSAHELLELAAKVAEILKPGMTLKHAKEGTESSTFWFALGGKQNFTSKKAASETVRDPHLYSFSINRGKFQVEEI YNFAQDDLLTEDVYLLDTHAEVFVWVGQCVDPKEKQTVFEIGQKYVERAGSLEGLSPKVPLYKITEGNEPCFFTTYFSWD STKATVQGNSFQKKAALLFGTHHVVEDKSSGGNQGLRQRAEALAALNSAFNSSGSKPSYSSQDRSSGSQEGPRQRAEALA ALTSAFNSSGPSSKSPPPPRPAGTSQASQRAAAVAALSQVLVAENPKSTDTSPTRRSTSSNPADENEEADASEEASHETK VEEEVSPAVEEPEAKQEETAEQDDSVIDASGATFTYEQLRAKSEIPVTGIDFKQREAYLSEEEFQSVFGMEKEAFNNLPR WKQDLLKRKFDLF* |
CDS seq | >BnaA05T0026800ZS ATGTCTGGGTCAACGAAAGTACTGGATCCTGCTTTTCAAGGAGCTGGACAGAAACCAGGAACTGAAATATGGAGAATCGA GAATTTTGAAGCTGTTCCAGTGCCAAAGTCTGAGCATGGAAAGTTTTATATGGGAGACACTTACATTGTCTTGCAGACCA CACAGAACAAAGGAGGTGCGTATCTGTTTGATATTCATTTCTGGATTGGGAAAGACACTAGTCAGGATGAAGCTGGAACA GCAGCTGTTAAGACAGTTGAACTCGACGCGGTTCTCGGAGGCCGTGCTGTCCAACACAGGGAGATTCAAGGTCACGAGTC TGACAAATTCTTGTCTTACTTCAAGCCATGTATTATACCTTTAGAGGGTGGTGTTGCGTCTGGTTTCAAAACACCTGAAG AAGAGGTGTTCGAAACACGGTTGTATACTTGCAAAGGCAAACGTGCAATCCGTTTGAAGCAGGTTCCTTTTGCCCGCTCA TCGCTGAATCATGATGATGTGTTTATCTTGGACACCAAGGAAAAGATCTACCAGTTCAACGGTGCTAATTCAAACATCCA GGAGAGAGCCAAAGCTTTGGAAGTCGTTCAGTATTTGAAAGACAAGTATCATGAAGGAACTTGTGATGTTGCTATTGTTG ATGATGGAAAGTTAGATACAGAATCAGATTCTGGTGAGTTTTGGGTCCTCTTTGGTGGTTTTGCTCCAATAGGAAGGAAA GTTGCTAATGATGATGATATCATCCCTGAATCAACTCCACCTAAGCTTTACAGCGTCATTGATGGTCAGATGGAAGCTAT AGACGGTGATCTAACCAAGTCTATGCTGGAGAACACTAAGTGTTACCTCTTGGACTGTGGTGCTGAGGTTTTTATCTGGG TTGGCCGAGTAACTCAAGTGGATGAGAGGAAAGCTGCTAGTCAATCTGTTGAGGACTATCTTGCAAGTGAAAACAGGCCA AAGGCAACACGTGTCACACGTGTCATCCAAGGCTATGAGTCTCACTCTTTCAAGTCTAACTTTGACTCTTGGCCATCAGG CTCATCCGCTCCTAGTAACGAAGAAGGACGAGGAAAAGTCGCTGCTTTGTTGAAGCAACAAGGTGTTGGGCTCAAGGGGA TTGCGAAAAGTGCACCAGTGAATGAGGATGTTCCACCTCTTCTTGAAGCTGGTGGAAAGTTGGAGGTTTGGTATGTTAAT GGCAAAGCTAAGACTCCGTTACCTAAAGAAGATATTGGGAAGCTCTATTCTGGGGACTGCTATTTGGTCCTTTACACCTA TCATTCTGGTGATAGGAAAGACGAGTTTTTCTTGTGCTGCTGGTTTGGAAAGAATAGTACTCAGGATGACCAAGAAACAG CACTTAGACTGGCGAATACAATGTCAAACTCGTTGAAGGGAAGACCTGTGCAGGGCCGTATATACGAGGGTAAAGAGCCT CCACAGTTTGTTGCTCTGTTCCAGCCTATGATTATCCTAAAGGGTGGTTTGAGCTCTGGGTACAAGAACATGGTGGAAGA GAAAGGTTCAGCAGATGAAACCTACACACCAGACTCGATTGCACTGATTCAAGTATCTGGAACTGGAGTTCACAATCATA AGGCACTTCAAGTTGAACCGGTGGCAACATCTTTAAACTCTTATGAGTGCTTCCTACTGCAATCTGGTACTTCCATGTTC CTATGGCATGGAAACCAAAGTGCGCATGAACTGCTGGAACTAGCTGCTAAAGTTGCTGAGATCTTGAAGCCTGGGATGAC TCTCAAGCATGCCAAAGAAGGAACAGAGAGCTCAACCTTTTGGTTTGCACTTGGAGGAAAGCAGAACTTCACCAGCAAGA AGGCAGCATCTGAGACTGTCAGAGATCCTCACTTATACTCATTTTCTATCAACAGAGGAAAGTTTCAGGTTGAAGAGATC TACAACTTTGCTCAAGATGACCTCTTGACAGAGGATGTATATTTGCTCGACACTCATGCTGAAGTCTTTGTCTGGGTTGG TCAATGTGTTGACCCCAAGGAGAAGCAAACTGTGTTTGAGATTGGCCAAAAATACGTTGAACGTGCTGGATCCTTGGAGG GCTTGTCTCCTAAAGTTCCACTCTACAAAATTACCGAAGGGAACGAGCCATGCTTCTTCACCACTTACTTTTCTTGGGAC TCCACTAAAGCTACTGTGCAAGGAAATTCATTCCAGAAGAAAGCAGCCTTGTTATTTGGCACTCACCACGTTGTGGAGGA TAAGTCTAGCGGTGGGAACCAAGGACTAAGGCAAAGAGCTGAAGCACTAGCTGCCTTGAATTCTGCATTTAATTCTTCTG GTAGCAAGCCATCATATTCGAGCCAGGACAGATCAAGCGGAAGTCAAGAGGGTCCAAGACAAAGAGCTGAAGCTTTAGCC GCCTTGACATCAGCGTTCAATTCTTCTGGACCATCATCTAAATCTCCTCCACCACCGAGGCCAGCGGGAACGAGCCAGGC TTCACAGAGGGCAGCAGCAGTGGCTGCTCTCTCCCAAGTTCTCGTTGCTGAGAATCCGAAATCAACTGATACCTCTCCTA CAAGAAGATCCACTAGCTCCAACCCAGCAGATGAGAATGAAGAAGCAGATGCTTCAGAAGAAGCTAGTCATGAAACCAAG GTAGAAGAGGAAGTTTCACCTGCAGTAGAAGAGCCAGAAGCAAAGCAGGAGGAAACAGCGGAGCAAGATGATTCTGTTAT AGACGCAAGTGGTGCAACTTTCACCTATGAACAGCTGAGAGCTAAATCTGAAATCCCTGTGACTGGAATCGATTTCAAGC AAAGAGAGGCTTATCTATCTGAGGAAGAGTTCCAGAGTGTGTTTGGGATGGAGAAAGAAGCATTCAACAACTTACCTCGG TGGAAGCAAGATCTGCTCAAGAGGAAATTCGACTTGTTCTAG |
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