Microexon ID Zm_7:98547923-98547933:-
Species Zea mays
Coordinates 7:98547923..98547933
Microexon Cluster ID MEP26
Size 11
Phase 1
Pfam Domain Motif PRMT5
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) 49,11,48
Microexon location in the Microexon-tag 2
Microexon-tag DNA Seq RRYGAYAARACCAGYGCYGAYTAYTACTTCGAYTCCTACTCYCAYTTYGGTATTCATGAAGAAATGYTGAARGATRYWGTGAGRACWAARACWTAYCAAAATGTTATY
Logo of Microexon-tag DNA Seq NT60 Logo
Alignment of exons MSA
Microexon DNA seq GTATTCATGAA
Microexon Amino Acid seq GIHE
Microexon-tag DNA Seq AGCGAAAAGACCAGCGCCGACTACTACTTCGACTCCTACTCCCACTTCGGTATTCATGAAGAAATGCTAAAAGATGTCGTTCGGACAAAAACATATCAAAATGTTATC
Microexon-tag Amino Acid Seq SEKTSADYYFDSYSHFGIHEEMLKDVVRTKTYQNVI
Microexon-tag spanning region98547727-98549049
Microexon-tag prediction score0.977
Overlapped with the annotated transcript (%) 80.17
New Transcript ID Zm00001d020188_T003x
Reference Transcript ID Zm00001d020188_T003
Gene ID Zm00001d020188
Gene Name NA
Zm_7:98547923-98547933:- does not have available information here.
Microexon DNA seq GTATTCATGAA
Microexon Amino Acid seq GIHE
Microexon-tag DNA Seq AGCGAAAAGACCAGCGCCGACTACTACTTCGACTCCTACTCCCACTTCGGTATTCATGAAGAAATGCTAAAAGATGTCGTTCGGACAAAAACATATCAAAATGTTATC
Microexon-tag Amino Acid seq SEKTSADYYFDSYSHFGIHEEMLKDVVRTKTYQNVI
Transcript ID Zm.30565.1
Gene ID Zm.30565
Gene Name NA
Pfam domain motif PRMT5
Motif E-value 0.00013
Motif start 78
Motif end 180
Protein seq >Zm.30565.1
MDRRKGGNRDANGSLVEATASRLRVESDEEAEEVGMEVEESFDAGVEDEQAAAEVIGSEKTSADYYFDSYSHFGIHEEML
KDVVRTKTYQNVITQSSFLIKNKVVLDVGAGTGILSLFCAKAGAKHVYAIECSQMADMAQEIVKSNGYSDVITVIKGKVE
EIELPVPKVDVIISEWMGYFLLFENMLNTVLYARDKWLADGGVVLPDRTSLRLTAIEDAEYKEDKIEFWNNVYGFDMSCI
KKQAMMEPLVDTVDANQIVTNCQLLKTMDISKMTPGDASFTVPFKLVAERNDYIHALVAYFDVSFTKCHKLMGFSTGPRS
KATHWKQTVLYLEDVITICQGESLSGSMTVTPNKSNPRDIDIKLKYSINGHRCQVSRTQFYKMR*
CDS seq >Zm.30565.1
ATGGATCGGCGCAAGGGCGGCAACCGCGACGCCAACGGCAGCCTGGTCGAGGCCACGGCGTCGCGGCTGAGGGTCGAATC
CGACGAGGAGGCGGAAGAGGTGGGGATGGAGGTGGAAGAGAGCTTCGACGCGGGGGTGGAAGACGAGCAGGCGGCGGCGG
AGGTGATTGGAAGCGAAAAGACCAGCGCCGACTACTACTTCGACTCCTACTCCCACTTCGGTATTCATGAAGAAATGCTA
AAAGATGTCGTTCGGACAAAAACATATCAAAATGTTATCACCCAGAGTAGCTTTCTTATCAAGAACAAAGTAGTCCTTGA
TGTTGGTGCTGGAACTGGAATTCTTTCTCTTTTCTGTGCAAAAGCAGGAGCTAAACATGTCTATGCGATTGAATGTTCCC
AGATGGCAGACATGGCACAGGAAATTGTAAAATCAAATGGATATTCAGATGTCATAACTGTAATAAAAGGGAAAGTGGAA
GAAATAGAACTTCCAGTCCCAAAAGTAGATGTCATCATCTCAGAGTGGATGGGCTATTTCCTCCTGTTCGAGAATATGTT
GAACACTGTCCTATATGCACGTGATAAATGGCTTGCTGATGGTGGTGTGGTCCTGCCAGACAGGACTTCTTTGCGTCTTA
CTGCGATTGAAGACGCAGAATATAAGGAAGACAAAATTGAATTTTGGAATAATGTATATGGATTTGATATGAGCTGCATA
AAGAAACAGGCGATGATGGAGCCACTGGTAGATACAGTGGATGCAAATCAGATTGTCACTAACTGCCAGTTACTGAAGAC
AATGGATATCTCCAAAATGACCCCAGGTGACGCGTCCTTTACTGTACCATTCAAGCTGGTAGCAGAGCGGAATGATTACA
TTCATGCTCTTGTCGCATACTTTGACGTGTCGTTCACCAAATGCCATAAGCTGATGGGCTTCTCAACAGGCCCGAGATCG
AAAGCCACTCACTGGAAGCAAACTGTTCTCTACCTGGAGGATGTTATAACTATCTGTCAGGGGGAAAGCCTGAGTGGTTC
CATGACAGTCACACCCAATAAGAGTAACCCTCGAGATATCGACATTAAGCTCAAGTACTCCATAAATGGGCATAGGTGTC
AGGTATCAAGAACACAGTTCTACAAGATGCGGTGA