
Microexon ID | Zm_7:98547923-98547933:- |
Species | Zea mays | Coordinates | 7:98547923..98547933 |
Microexon Cluster ID | MEP26 |
Size | 11 |
Phase | 1 |
Pfam Domain Motif | PRMT5 |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 49,11,48 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | RRYGAYAARACCAGYGCYGAYTAYTACTTCGAYTCCTACTCYCAYTTYGGTATTCATGAAGAAATGYTGAARGATRYWGTGAGRACWAARACWTAYCAAAATGTTATY |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | GTATTCATGAA |
Microexon Amino Acid seq | GIHE |
Microexon-tag DNA Seq | AGCGAAAAGACCAGCGCCGACTACTACTTCGACTCCTACTCCCACTTCGGTATTCATGAAGAAATGCTAAAAGATGTCGTTCGGACAAAAACATATCAAAATGTTATC |
Microexon-tag Amino Acid Seq | SEKTSADYYFDSYSHFGIHEEMLKDVVRTKTYQNVI |
Microexon-tag spanning region | 98547727-98549049 |
Microexon-tag prediction score | 0.977 |
Overlapped with the annotated transcript (%) | 80.17 |
New Transcript ID | Zm00001d020188_T003x |
Reference Transcript ID | Zm00001d020188_T003 |
Gene ID | Zm00001d020188 |
Gene Name | NA |
Zm_7:98547923-98547933:- does not have available information here.
Microexon DNA seq | GTATTCATGAA |
Microexon Amino Acid seq | GIHE |
Microexon-tag DNA Seq | AGCGAAAAGACCAGCGCCGACTACTACTTCGACTCCTACTCCCACTTCGGTATTCATGAAGAAATGCTAAAAGATGTCGTTCGGACAAAAACATATCAAAATGTTATC |
Microexon-tag Amino Acid seq | SEKTSADYYFDSYSHFGIHEEMLKDVVRTKTYQNVI |
Transcript ID | Zm.30565.1 |
Gene ID | Zm.30565 |
Gene Name | NA |
Pfam domain motif | PRMT5 |
Motif E-value | 0.00013 |
Motif start | 78 |
Motif end | 180 |
Protein seq | >Zm.30565.1 MDRRKGGNRDANGSLVEATASRLRVESDEEAEEVGMEVEESFDAGVEDEQAAAEVIGSEKTSADYYFDSYSHFGIHEEML KDVVRTKTYQNVITQSSFLIKNKVVLDVGAGTGILSLFCAKAGAKHVYAIECSQMADMAQEIVKSNGYSDVITVIKGKVE EIELPVPKVDVIISEWMGYFLLFENMLNTVLYARDKWLADGGVVLPDRTSLRLTAIEDAEYKEDKIEFWNNVYGFDMSCI KKQAMMEPLVDTVDANQIVTNCQLLKTMDISKMTPGDASFTVPFKLVAERNDYIHALVAYFDVSFTKCHKLMGFSTGPRS KATHWKQTVLYLEDVITICQGESLSGSMTVTPNKSNPRDIDIKLKYSINGHRCQVSRTQFYKMR* |
CDS seq | >Zm.30565.1 ATGGATCGGCGCAAGGGCGGCAACCGCGACGCCAACGGCAGCCTGGTCGAGGCCACGGCGTCGCGGCTGAGGGTCGAATC CGACGAGGAGGCGGAAGAGGTGGGGATGGAGGTGGAAGAGAGCTTCGACGCGGGGGTGGAAGACGAGCAGGCGGCGGCGG AGGTGATTGGAAGCGAAAAGACCAGCGCCGACTACTACTTCGACTCCTACTCCCACTTCGGTATTCATGAAGAAATGCTA AAAGATGTCGTTCGGACAAAAACATATCAAAATGTTATCACCCAGAGTAGCTTTCTTATCAAGAACAAAGTAGTCCTTGA TGTTGGTGCTGGAACTGGAATTCTTTCTCTTTTCTGTGCAAAAGCAGGAGCTAAACATGTCTATGCGATTGAATGTTCCC AGATGGCAGACATGGCACAGGAAATTGTAAAATCAAATGGATATTCAGATGTCATAACTGTAATAAAAGGGAAAGTGGAA GAAATAGAACTTCCAGTCCCAAAAGTAGATGTCATCATCTCAGAGTGGATGGGCTATTTCCTCCTGTTCGAGAATATGTT GAACACTGTCCTATATGCACGTGATAAATGGCTTGCTGATGGTGGTGTGGTCCTGCCAGACAGGACTTCTTTGCGTCTTA CTGCGATTGAAGACGCAGAATATAAGGAAGACAAAATTGAATTTTGGAATAATGTATATGGATTTGATATGAGCTGCATA AAGAAACAGGCGATGATGGAGCCACTGGTAGATACAGTGGATGCAAATCAGATTGTCACTAACTGCCAGTTACTGAAGAC AATGGATATCTCCAAAATGACCCCAGGTGACGCGTCCTTTACTGTACCATTCAAGCTGGTAGCAGAGCGGAATGATTACA TTCATGCTCTTGTCGCATACTTTGACGTGTCGTTCACCAAATGCCATAAGCTGATGGGCTTCTCAACAGGCCCGAGATCG AAAGCCACTCACTGGAAGCAAACTGTTCTCTACCTGGAGGATGTTATAACTATCTGTCAGGGGGAAAGCCTGAGTGGTTC CATGACAGTCACACCCAATAAGAGTAACCCTCGAGATATCGACATTAAGCTCAAGTACTCCATAAATGGGCATAGGTGTC AGGTATCAAGAACACAGTTCTACAAGATGCGGTGA |