Microexon ID Vv_11:2021619-2021629:-
Species Vistis vinifera
Coordinates 11:2021619..2021629
Microexon Cluster ID MEP26
Size 11
Phase 1
Pfam Domain Motif PRMT5
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) 49,11,48
Microexon location in the Microexon-tag 2
Microexon-tag DNA Seq RRYGAYAARACCAGYGCYGAYTAYTACTTCGAYTCCTACTCYCAYTTYGGTATTCATGAAGAAATGYTGAARGATRYWGTGAGRACWAARACWTAYCAAAATGTTATY
Logo of Microexon-tag DNA Seq NT60 Logo
Alignment of exons MSA
Microexon DNA seq GTATTCATGAA
Microexon Amino Acid seq GIHE
Microexon-tag DNA Seq AGTGATAAGACCAGCGCCGATTATTACTTCGACTCCTATTCTCACTTCGGTATTCATGAAGAAATGTTGAAGGATGTTGTGAGAACTAAGACCTATCAAAATGTCATT
Microexon-tag Amino Acid Seq SDKTSADYYFDSYSHFGIHEEMLKDVVRTKTYQNVI
Microexon-tag spanning region2020695-2022113
Microexon-tag prediction score0.9881
Overlapped with the annotated transcript (%) 100
New Transcript ID VIT_11s0016g02530.t01x
Reference Transcript ID VIT_11s0016g02530.t01
Gene ID VIT_11s0016g02530
Gene Name NA
Transcript ID VIT_11s0016g02530.t01
Protein ID VIT_11s0016g02530.t01
Gene ID VIT_11s0016g02530
Gene Name NA
Pfam domain motif PRMT5
Motif E-value 0.0041
Motif start 44
Motif end 146
Protein seq >VIT_11s0016g02530.t01
MCEPGESDKDIARSFELDDSVIGSDKTSADYYFDSYSHFGIHEEMLKDVVRTKTYQNVIYKNKFLFKNKVVLDVGAGTGI
LSLFCAKAGAKHVYAVECSHMADMAKEIVEVNGFSDVITVMKGKVEEIVLPVAQVDIIISEWMGYFLLFENMLNTVLYAR
DKWLVNDGIVLPDKASLYLTAIEDAEYKEDKIEFWNSVYGFDMSCIKKQAMMEPLVDTVDQNQIVTNCQLLKTMDISKMA
PGDASFTAPFKLVASRDDYIHALVAYFDVSFTKCHKLTGFSTGPRSRATHWKQTVLYLEDVLTICEGETVVGSMTVAQNK
KNPRDVDIMIKYSFNGQRCQVSRTQYYKMR*
CDS seq >VIT_11s0016g02530.t01
ATGTGCGAGCCTGGCGAGTCTGATAAAGACATTGCACGATCTTTCGAGCTCGACGACTCCGTCATTGGCAGTGATAAGAC
CAGCGCCGATTATTACTTCGACTCCTATTCTCACTTCGGTATTCATGAAGAAATGTTGAAGGATGTTGTGAGAACTAAGA
CCTATCAAAATGTCATTTATAAGAATAAGTTTCTGTTCAAGAACAAAGTAGTCCTTGATGTGGGAGCAGGGACTGGAATT
CTGTCCCTCTTTTGTGCAAAGGCAGGGGCAAAACATGTTTATGCGGTTGAGTGTTCCCATATGGCTGACATGGCAAAAGA
GATTGTTGAAGTAAATGGATTTTCTGATGTTATAACAGTTATGAAAGGAAAGGTTGAAGAAATTGTTCTTCCTGTTGCTC
AAGTGGATATCATTATATCAGAATGGATGGGCTACTTTTTGTTGTTTGAGAATATGTTAAATACAGTCCTATATGCTCGT
GATAAATGGCTTGTGAATGATGGTATTGTGCTGCCAGACAAAGCATCTCTCTATTTGACAGCCATTGAGGATGCGGAGTA
CAAAGAAGACAAGATTGAATTTTGGAACAGTGTGTATGGCTTTGACATGAGCTGTATCAAGAAGCAAGCAATGATGGAAC
CACTTGTGGACACAGTTGATCAGAATCAGATCGTCACAAACTGCCAGTTACTCAAGACTATGGACATCTCTAAAATGGCT
CCTGGGGATGCTTCCTTCACAGCTCCTTTTAAGCTTGTGGCATCACGCGATGATTACATCCATGCTCTTGTAGCATATTT
TGATGTATCATTTACCAAGTGTCATAAATTGACAGGCTTCTCCACAGGGCCAAGATCACGGGCTACACATTGGAAACAAA
CAGTCCTGTATCTGGAAGATGTGCTAACCATATGCGAAGGGGAGACAGTTGTTGGGAGCATGACAGTGGCCCAGAACAAG
AAGAATCCTCGTGACGTTGATATAATGATCAAATATTCCTTCAATGGTCAGCGTTGCCAGGTCTCAAGAACTCAATATTA
CAAGATGCGTTAG
Microexon DNA seq GTATTCATGAA
Microexon Amino Acid seq GIHE
Microexon-tag DNA Seq AGTGATAAGACCAGCGCCGATTATTACTTCGACTCCTATTCTCACTTCGGTATTCATGAAGAAATGTTGAAGGATGTTGTGAGAACTAAGACCTATCAAAATGTCATT
Microexon-tag Amino Acid seq SDKTSADYYFDSYSHFGIHEEMLKDVVRTKTYQNVI
Transcript ID Vv.3356.1
Gene ID Vv.3356
Gene Name NA
Pfam domain motif PRMT5
Motif E-value 0.0025
Motif start 100
Motif end 202
Protein seq >Vv.3356.1
MARRESHSHHPHHHQGTHTRFEDEQIEEATESSNLEDPMCDADESTIGQDKAIDDTMCEPGESDKDIARSFELDDSVIGS
DKTSADYYFDSYSHFGIHEEMLKDVVRTKTYQNVIYKNKFLFKNKVVLDVGAGTGILSLFCAKAGAKHVYAVECSHMADM
AKEIVEVNGFSDVITVMKGKVEEIVLPVAQVDIIISEWMGYFLLFENMLNTVLYARDKWLVNDGIVLPDKASLYLTAIED
AEYKEDKIECEPIEIFKIHLSRIFFSFCLCFYVWER*
CDS seq >Vv.3356.1
ATGGCTCGACGAGAGTCCCACAGCCACCACCCCCACCACCACCAAGGCACGCACACCAGATTCGAGGACGAACAGATCGA
AGAAGCGACGGAGAGCTCCAACCTCGAAGATCCTATGTGCGACGCAGACGAGTCCACCATTGGCCAAGACAAAGCCATTG
ATGACACGATGTGCGAGCCTGGCGAGTCTGATAAAGACATTGCACGATCTTTCGAGCTCGACGACTCCGTCATTGGCAGT
GATAAGACCAGCGCCGATTATTACTTCGACTCCTATTCTCACTTCGGTATTCATGAAGAAATGTTGAAGGATGTTGTGAG
AACTAAGACCTATCAAAATGTCATTTATAAGAATAAGTTTCTGTTCAAGAACAAAGTAGTCCTTGATGTGGGAGCAGGGA
CTGGAATTCTGTCCCTCTTTTGTGCAAAGGCAGGGGCAAAACATGTTTATGCGGTTGAGTGTTCCCATATGGCTGACATG
GCAAAAGAGATTGTTGAAGTAAATGGATTTTCTGATGTTATAACAGTTATGAAAGGAAAGGTTGAAGAAATTGTTCTTCC
TGTTGCTCAAGTGGATATCATTATATCAGAATGGATGGGCTACTTTTTGTTGTTTGAGAATATGTTAAATACAGTCCTAT
ATGCTCGTGATAAATGGCTTGTGAATGATGGTATTGTGCTGCCAGACAAAGCATCTCTCTATTTGACAGCCATTGAGGAT
GCGGAGTACAAAGAAGACAAGATTGAATGTGAGCCTATTGAGATTTTTAAAATACATTTGAGTAGAATATTTTTCTCATT
CTGTCTATGTTTTTATGTGTGGGAAAGATGA