
Microexon ID | Sm_GL377601:296053-296063:- |
Species | Selaginella moellendorffii | Coordinates | GL377601:296053..296063 |
Microexon Cluster ID | MEP26 |
Size | 11 |
Phase | 1 |
Pfam Domain Motif | PRMT5 |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 49,11,48 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | RRYGAYAARACCAGYGCYGAYTAYTACTTCGAYTCCTACTCYCAYTTYGGTATTCATGAAGAAATGYTGAARGATRYWGTGAGRACWAARACWTAYCAAAATGTTATY |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | GTATTCACGAA |
Microexon Amino Acid seq | GIHE |
Microexon-tag DNA Seq | GTCGATCCCACCAGCGCGGATTATTACTTCGATTCTTATGCGCATTTCGGTATTCACGAAGAAATGCTTAAAGATACTGTGAGAACGAAGACTTACCAGAACGTTATT |
Microexon-tag Amino Acid Seq | VDPTSADYYFDSYAHFGIHEEMLKDTVRTKTYQNVI |
Microexon-tag spanning region | 295938-296166 |
Microexon-tag prediction score | 0.9478 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | EFJ20820x |
Reference Transcript ID | EFJ20820 |
Gene ID | SELMODRAFT_108460 |
Gene Name | NA |
Transcript ID | EFJ20820 |
Protein ID | EFJ20820 |
Gene ID | SELMODRAFT_108460 |
Gene Name | NA |
Pfam domain motif | PRMT5 |
Motif E-value | 0.0056 |
Motif start | 31 |
Motif end | 133 |
Protein seq | >EFJ20820 MEEILPEEHEVDPTSADYYFDSYAHFGIHEEMLKDTVRTKTYQNVIYENGFLFKDKVVLDVGAGTGILSLFCAKGGAKHV YAVECSLMANTAKEIIQKNGYSDVITVLKGKVEEIELPVQQVDVIISEWMGYFLLFENMLDTVLYARDKWLVPGGVVLPD RTSLHLTAIEDADYKHEKINFWSSVYGFDMSCIKKQAMLEPLVDTVEPNQIVTQTQLIKTMDISNMTPGDVSFSAPFKLV ATRNDFIHALVAYFDVSFTKCHKVVGFSTGPRSRPTHWKQTVLYLEDVITICEGEALTGKMSVAPNARNPRDVDIVVEYT FNGKRSQASRRQHFRMR* |
CDS seq | >EFJ20820 ATGGAGGAAATCCTCCCCGAGGAGCACGAGGTCGATCCCACCAGCGCGGATTATTACTTCGATTCTTATGCGCATTTCGG TATTCACGAAGAAATGCTTAAAGATACTGTGAGAACGAAGACTTACCAGAACGTTATTTATGAAAATGGATTCCTCTTCA AGGACAAGGTAGTTCTAGATGTCGGTGCCGGGACGGGAATTCTCTCCTTGTTTTGTGCGAAGGGTGGAGCAAAGCATGTC TATGCGGTGGAATGCTCGCTAATGGCCAATACCGCGAAAGAAATCATACAAAAGAATGGATATAGTGATGTGATTACTGT CCTCAAAGGCAAGGTGGAAGAGATCGAGCTCCCTGTTCAGCAAGTGGACGTGATCATCTCCGAATGGATGGGATATTTCC TTCTCTTCGAAAACATGCTCGACACTGTCCTGTATGCCCGTGACAAATGGCTCGTGCCCGGCGGCGTGGTTCTTCCGGAC AGAACAAGCTTGCACTTGACAGCGATCGAAGACGCAGACTACAAGCACGAGAAAATAAACTTCTGGAGCTCGGTCTATGG ATTTGACATGAGCTGCATCAAGAAACAAGCGATGCTGGAGCCTCTGGTTGACACGGTCGAGCCAAACCAGATCGTCACAC AGACGCAGCTGATCAAGACAATGGATATTAGCAACATGACACCCGGGGATGTGTCCTTCTCGGCTCCGTTCAAGCTCGTT GCCACCCGAAACGATTTTATCCATGCGCTGGTAGCATACTTCGACGTCTCCTTTACAAAGTGCCACAAGGTGGTGGGATT CTCCACAGGGCCTCGTTCTCGTCCAACGCACTGGAAGCAAACCGTCTTGTATCTGGAAGACGTGATCACGATTTGCGAGG GAGAGGCGCTTACCGGGAAGATGTCGGTGGCTCCAAACGCCCGCAATCCTCGAGACGTGGACATTGTCGTCGAGTATACT TTCAATGGCAAGCGCAGCCAAGCGTCTCGGAGGCAACACTTTAGGATGCGATAA |
Microexon DNA seq | NA |
Microexon Amino Acid seq | NA |
Microexon-tag DNA Seq | NA |
Microexon-tag Amino Acid seq | NA |
Transcript ID | Sm.16862.1 |
Gene ID | Sm.16862 |
Gene Name | NA |
Pfam domain motif | NA |
Motif E-value | NA |
Motif start | NA |
Motif end | NA |
Protein seq | |
CDS seq |