
Microexon ID | Sb_2:56015932-56015942:- |
Species | Sorghum Bicolor | Coordinates | 2:56015932..56015942 |
Microexon Cluster ID | MEP26 |
Size | 11 |
Phase | 1 |
Pfam Domain Motif | PRMT5 |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 49,11,48 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | RRYGAYAARACCAGYGCYGAYTAYTACTTCGAYTCCTACTCYCAYTTYGGTATTCATGAAGAAATGYTGAARGATRYWGTGAGRACWAARACWTAYCAAAATGTTATY |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | GTATTCATGAA |
Microexon Amino Acid seq | GIHE |
Microexon-tag DNA Seq | AGCGAAAAGACCAGCGCCGACTACTACTTCGACTCCTATTCCCACTTCGGTATTCATGAAGAAATGCTAAAAGATGTTGTTCGGACAAAGACATATCAAAATGTTATC |
Microexon-tag Amino Acid Seq | SEKTSADYYFDSYSHFGIHEEMLKDVVRTKTYQNVI |
Microexon-tag spanning region | 56015736-56017045 |
Microexon-tag prediction score | 0.9793 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | EER98789x |
Reference Transcript ID | EER98789 |
Gene ID | SORBI_3002G179000 |
Gene Name | NA |
Transcript ID | EER98789 |
Protein ID | |
Gene ID | SORBI_3002G179000 |
Gene Name | |
Pfam domain motif | PRMT5 |
Motif E-value | 0.00039 |
Motif start | 78 |
Motif end | 180 |
Protein seq | >EER98789 MDRRKGSNRDANGGLAEATASRLRFDTEEEAEEVGMEVEESLDAEGEDGQASAEVIGSEKTSADYYFDSYSHFGIHEEML KDVVRTKTYQNVIFQNSFLIKDKVVLDVGAGTGILSLFCAKAGAKHVYAIECSQMADMAKEIVKSNGYSDVITVIKGKVE EIELPVPKVDVIISEWMGYFLLFENMLNTVLYARDKWLADGGVVLPDKTSLRLTAIEDAEYKEDKIEFWNNVYGFDMSCI KKQAMMEPLVDTVDANQIVTNCQLLKTMDISKMTPGDASFTVPFKLVAERNDYIHALVAYFDVSFTKCHKLMGFSTGPRS KATHWKQTVLYLEDVITICQGETLTGSMTVTPNKNNPRDIDIKLKYSIDGHRCQVSRTQFYKMR* |
CDS seq | >EER98789 ATGGATCGTCGCAAGGGCAGCAACCGCGACGCCAACGGCGGCCTGGCGGAGGCCACGGCGTCGCGGCTGAGGTTCGACAC CGAGGAAGAGGCGGAAGAGGTGGGTATGGAGGTGGAAGAGAGCCTCGACGCGGAGGGGGAGGACGGGCAGGCGTCGGCGG AGGTGATTGGAAGCGAAAAGACCAGCGCCGACTACTACTTCGACTCCTATTCCCACTTCGGTATTCATGAAGAAATGCTA AAAGATGTTGTTCGGACAAAGACATATCAAAATGTTATCTTCCAGAACAGCTTTCTTATCAAGGACAAAGTAGTCCTTGA TGTTGGTGCTGGAACTGGAATTCTTTCACTTTTCTGTGCAAAGGCAGGAGCTAAACATGTCTATGCGATTGAATGTTCCC AGATGGCAGACATGGCAAAGGAAATTGTGAAATCAAATGGATATTCTGATGTCATAACTGTAATAAAAGGGAAAGTGGAA GAAATAGAACTTCCGGTCCCAAAAGTAGATGTCATCATCTCGGAGTGGATGGGTTATTTTCTCCTGTTCGAGAATATGTT GAACACTGTCCTATATGCACGTGATAAATGGCTTGCTGATGGTGGTGTGGTCCTGCCAGACAAAACTTCTTTGCGTCTTA CTGCGATTGAAGATGCTGAATATAAGGAAGACAAAATTGAATTTTGGAATAATGTATATGGATTTGATATGAGCTGCATA AAGAAACAGGCGATGATGGAGCCACTGGTAGATACAGTGGATGCAAATCAGATTGTCACTAACTGCCAGTTACTAAAGAC AATGGATATCTCCAAAATGACCCCTGGTGACGCGTCCTTTACTGTACCATTCAAGCTGGTTGCGGAGCGGAATGATTACA TTCATGCTCTTGTTGCATACTTCGACGTGTCATTCACCAAATGCCATAAGCTGATGGGCTTCTCAACAGGCCCGAGGTCA AAAGCCACTCACTGGAAGCAAACTGTTCTTTACCTCGAGGATGTAATAACTATCTGCCAGGGGGAAACCCTGACGGGTAG CATGACAGTCACACCCAATAAGAACAACCCTCGAGATATCGACATTAAGCTCAAGTACTCCATAGATGGGCATAGGTGTC AGGTATCAAGAACTCAATTCTACAAGATGCGGTGA |
Sb_2:56015932-56015942:- does not have available information here.