
Microexon ID | Pp_10:6659733-6659743:- |
Species | Physcomitrium patens | Coordinates | 10:6659733..6659743 |
Microexon Cluster ID | MEP26 |
Size | 11 |
Phase | 1 |
Pfam Domain Motif | PRMT5 |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 49,11,48 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | RRYGAYAARACCAGYGCYGAYTAYTACTTCGAYTCCTACTCYCAYTTYGGTATTCATGAAGAAATGYTGAARGATRYWGTGAGRACWAARACWTAYCAAAATGTTATY |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | GCATTCATGAA |
Microexon Amino Acid seq | GIHE |
Microexon-tag DNA Seq | TCTGACCATACTAGCTCAGATTATTACTTTGATTCATACGCACATTTCGGCATTCATGAAGAGATGTTGAAGGATACAGTGAGAACAAAGACGTATCAGAATGCCATC |
Microexon-tag Amino Acid Seq | SDHTSSDYYFDSYAHFGIHEEMLKDTVRTKTYQNAI |
Microexon-tag spanning region | 6659397-6660128 |
Microexon-tag prediction score | 0.9339 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | Pp3c10_9950V3.1x |
Reference Transcript ID | Pp3c10_9950V3.1 |
Gene ID | Pp3c10_9950 |
Gene Name | NA |
Transcript ID | Pp3c10_9950V3.1 |
Protein ID | Pp3c10_9950V3.1 |
Gene ID | Pp3c10_9950 |
Gene Name | NA |
Pfam domain motif | PRMT5 |
Motif E-value | 0.00027 |
Motif start | 64 |
Motif end | 166 |
Protein seq | >Pp3c10_9950V3.1 MSSMDVADTVSAEAMAVEGEAVTTPEPLITSIRIEGDEGVGMPSDHTSSDYYFDSYAHFGIHEEMLKDTVRTKTYQNAIY QNGFLFKDKVVLDVGAGTGVLSLFCAKGGAKHVYAVECSTMADTAREIVKANGYSDVVTVIKGKLEEITLPVDKVDIIIS EWMGYFLLFENMLDTVLYARDKWLVPGGLVMPDRTSLYLTAIEDAEYKQEKINFWEQVYGFDMSCIKKQAMVEPLVDVVD ANQIVTHATHLKTMDISKMNTGDASFTARFKLVATRNDFIHALVAYFDVTFSMCHKSTGFSTGPRARPTHWKQTVIYLED VITICEGEALTGTMSVSQNKKNPRDLDVTVSYNFNGKRSQATRTQHYRMR* |
CDS seq | >Pp3c10_9950V3.1 ATGTCTTCGATGGACGTCGCTGACACAGTAAGTGCGGAGGCTATGGCTGTTGAAGGCGAGGCGGTGACCACGCCGGAGCC ACTGATCACCTCAATTCGGATTGAGGGTGACGAGGGAGTTGGGATGCCGTCTGACCATACTAGCTCAGATTATTACTTTG ATTCATACGCACATTTCGGCATTCATGAAGAGATGTTGAAGGATACAGTGAGAACAAAGACGTATCAGAATGCCATCTAT CAAAATGGTTTTTTATTCAAGGATAAAGTCGTTCTTGATGTGGGAGCGGGCACCGGTGTTCTTTCCCTTTTCTGTGCCAA GGGAGGAGCTAAGCACGTATATGCGGTGGAATGCTCGACGATGGCGGATACTGCTAGGGAGATTGTGAAGGCCAACGGCT ACAGCGATGTGGTCACAGTCATCAAAGGAAAGTTGGAGGAGATCACTCTGCCAGTTGACAAAGTCGACATTATTATCTCA GAGTGGATGGGCTACTTTCTTCTTTTTGAAAACATGCTGGACACCGTACTTTATGCTCGAGACAAATGGTTGGTCCCTGG AGGTCTGGTTATGCCCGATAGAACTTCACTGTATCTTACTGCCATTGAAGATGCTGAATACAAACAGGAGAAAATTAACT TTTGGGAGCAGGTTTATGGATTTGACATGAGCTGTATCAAGAAACAAGCGATGGTCGAACCTCTGGTGGATGTAGTCGAT GCTAATCAGATTGTGACACATGCAACACACTTGAAGACTATGGACATCAGCAAGATGAACACTGGGGATGCTTCTTTCAC AGCTCGCTTCAAATTAGTGGCTACTCGAAACGATTTTATACATGCTTTGGTCGCGTACTTCGATGTTACGTTTTCAATGT GCCACAAGAGTACTGGTTTCTCGACAGGACCCAGGGCACGGCCTACACACTGGAAGCAAACTGTGATCTATCTGGAGGAT GTCATCACCATCTGCGAGGGTGAGGCATTGACAGGCACAATGAGCGTCTCTCAGAACAAGAAGAATCCTCGTGACTTAGA TGTGACTGTCTCATACAATTTCAACGGGAAAAGGTCGCAAGCTACAAGAACACAACATTATCGCATGCGTTGA |
Microexon DNA seq | GCATTCATGAA |
Microexon Amino Acid seq | GIHE |
Microexon-tag DNA Seq | TCTGACCATACTAGCTCAGATTATTACTTTGATTCATACGCACATTTCGGCATTCATGAAGAGATGTTGAAGGATACAGTGAGAACAAAGACGTATCAGAATGCCATC |
Microexon-tag Amino Acid seq | SDHTSSDYYFDSYAHFGIHEEMLKDTVRTKTYQNAI |
Transcript ID | Pp3c10_9950V3.1 |
Gene ID | Pp.2020 |
Gene Name | NA |
Pfam domain motif | PRMT5 |
Motif E-value | 0.00028 |
Motif start | 64 |
Motif end | 166 |
Protein seq | >Pp3c10_9950V3.1 MSSMDVADTVSAEAMAVEGEAVTTPEPLITSIRIEGDEGVGMPSDHTSSDYYFDSYAHFGIHEEMLKDTVRTKTYQNAIY QNGFLFKDKVVLDVGAGTGVLSLFCAKGGAKHVYAVECSTMADTAREIVKANGYSDVVTVIKGKLEEITLPVDKVDIIIS EWMGYFLLFENMLDTVLYARDKWLVPGGLVMPDRTSLYLTAIEDAEYKQEKINFWEQVYGFDMSCIKKQAMVEPLVDVVD ANQIVTHATHLKTMDISKMNTGDASFTARFKLVATRNDFIHALVAYFDVTFSMCHKSTGFSTGPRARPTHWKQTVIYLED VITICEGEALTGTMSVSQNKKNPRDLDVTVSYNFNGKRSQATRTQHYRMR* |
CDS seq | >Pp3c10_9950V3.1 ATGTCTTCGATGGACGTCGCTGACACAGTAAGTGCGGAGGCTATGGCTGTTGAAGGCGAGGCGGTGACCACGCCGGAGCC ACTGATCACCTCAATTCGGATTGAGGGTGACGAGGGAGTTGGGATGCCGTCTGACCATACTAGCTCAGATTATTACTTTG ATTCATACGCACATTTCGGCATTCATGAAGAGATGTTGAAGGATACAGTGAGAACAAAGACGTATCAGAATGCCATCTAT CAAAATGGTTTTTTATTCAAGGATAAAGTCGTTCTTGATGTGGGAGCGGGCACCGGTGTTCTTTCCCTTTTCTGTGCCAA GGGAGGAGCTAAGCACGTATATGCGGTGGAATGCTCGACGATGGCGGATACTGCTAGGGAGATTGTGAAGGCCAACGGCT ACAGCGATGTGGTCACAGTCATCAAAGGAAAGTTGGAGGAGATCACTCTGCCAGTTGACAAAGTCGACATTATTATCTCA GAGTGGATGGGCTACTTTCTTCTTTTTGAAAACATGCTGGACACCGTACTTTATGCTCGAGACAAATGGTTGGTCCCTGG AGGTCTGGTTATGCCCGATAGAACTTCACTGTATCTTACTGCCATTGAAGATGCTGAATACAAACAGGAGAAAATTAACT TTTGGGAGCAGGTTTATGGATTTGACATGAGCTGTATCAAGAAACAAGCGATGGTCGAACCTCTGGTGGATGTAGTCGAT GCTAATCAGATTGTGACACATGCAACACACTTGAAGACTATGGACATCAGCAAGATGAACACTGGGGATGCTTCTTTCAC AGCTCGCTTCAAATTAGTGGCTACTCGAAACGATTTTATACATGCTTTGGTCGCGTACTTCGATGTTACGTTTTCAATGT GCCACAAGAGTACTGGTTTCTCGACAGGACCCAGGGCACGGCCTACACACTGGAAGCAAACTGTGATCTATCTGGAGGAT GTCATCACCATCTGCGAGGGTGAGGCATTGACAGGCACAATGAGCGTCTCTCAGAACAAGAAGAATCCTCGTGACTTAGA TGTGACTGTCTCATACAATTTCAACGGGAAAAGGTCGCAAGCTACAAGAACACAACATTATCGCATGCGTTGA |