Microexon ID Pp_10:6659733-6659743:-
Species Physcomitrium patens
Coordinates 10:6659733..6659743
Microexon Cluster ID MEP26
Size 11
Phase 1
Pfam Domain Motif PRMT5
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) 49,11,48
Microexon location in the Microexon-tag 2
Microexon-tag DNA Seq RRYGAYAARACCAGYGCYGAYTAYTACTTCGAYTCCTACTCYCAYTTYGGTATTCATGAAGAAATGYTGAARGATRYWGTGAGRACWAARACWTAYCAAAATGTTATY
Logo of Microexon-tag DNA Seq NT60 Logo
Alignment of exons MSA
Microexon DNA seq GCATTCATGAA
Microexon Amino Acid seq GIHE
Microexon-tag DNA Seq TCTGACCATACTAGCTCAGATTATTACTTTGATTCATACGCACATTTCGGCATTCATGAAGAGATGTTGAAGGATACAGTGAGAACAAAGACGTATCAGAATGCCATC
Microexon-tag Amino Acid Seq SDHTSSDYYFDSYAHFGIHEEMLKDTVRTKTYQNAI
Microexon-tag spanning region6659397-6660128
Microexon-tag prediction score0.9339
Overlapped with the annotated transcript (%) 100
New Transcript ID Pp3c10_9950V3.1x
Reference Transcript ID Pp3c10_9950V3.1
Gene ID Pp3c10_9950
Gene Name NA
Transcript ID Pp3c10_9950V3.1
Protein ID Pp3c10_9950V3.1
Gene ID Pp3c10_9950
Gene Name NA
Pfam domain motif PRMT5
Motif E-value 0.00027
Motif start 64
Motif end 166
Protein seq >Pp3c10_9950V3.1
MSSMDVADTVSAEAMAVEGEAVTTPEPLITSIRIEGDEGVGMPSDHTSSDYYFDSYAHFGIHEEMLKDTVRTKTYQNAIY
QNGFLFKDKVVLDVGAGTGVLSLFCAKGGAKHVYAVECSTMADTAREIVKANGYSDVVTVIKGKLEEITLPVDKVDIIIS
EWMGYFLLFENMLDTVLYARDKWLVPGGLVMPDRTSLYLTAIEDAEYKQEKINFWEQVYGFDMSCIKKQAMVEPLVDVVD
ANQIVTHATHLKTMDISKMNTGDASFTARFKLVATRNDFIHALVAYFDVTFSMCHKSTGFSTGPRARPTHWKQTVIYLED
VITICEGEALTGTMSVSQNKKNPRDLDVTVSYNFNGKRSQATRTQHYRMR*
CDS seq >Pp3c10_9950V3.1
ATGTCTTCGATGGACGTCGCTGACACAGTAAGTGCGGAGGCTATGGCTGTTGAAGGCGAGGCGGTGACCACGCCGGAGCC
ACTGATCACCTCAATTCGGATTGAGGGTGACGAGGGAGTTGGGATGCCGTCTGACCATACTAGCTCAGATTATTACTTTG
ATTCATACGCACATTTCGGCATTCATGAAGAGATGTTGAAGGATACAGTGAGAACAAAGACGTATCAGAATGCCATCTAT
CAAAATGGTTTTTTATTCAAGGATAAAGTCGTTCTTGATGTGGGAGCGGGCACCGGTGTTCTTTCCCTTTTCTGTGCCAA
GGGAGGAGCTAAGCACGTATATGCGGTGGAATGCTCGACGATGGCGGATACTGCTAGGGAGATTGTGAAGGCCAACGGCT
ACAGCGATGTGGTCACAGTCATCAAAGGAAAGTTGGAGGAGATCACTCTGCCAGTTGACAAAGTCGACATTATTATCTCA
GAGTGGATGGGCTACTTTCTTCTTTTTGAAAACATGCTGGACACCGTACTTTATGCTCGAGACAAATGGTTGGTCCCTGG
AGGTCTGGTTATGCCCGATAGAACTTCACTGTATCTTACTGCCATTGAAGATGCTGAATACAAACAGGAGAAAATTAACT
TTTGGGAGCAGGTTTATGGATTTGACATGAGCTGTATCAAGAAACAAGCGATGGTCGAACCTCTGGTGGATGTAGTCGAT
GCTAATCAGATTGTGACACATGCAACACACTTGAAGACTATGGACATCAGCAAGATGAACACTGGGGATGCTTCTTTCAC
AGCTCGCTTCAAATTAGTGGCTACTCGAAACGATTTTATACATGCTTTGGTCGCGTACTTCGATGTTACGTTTTCAATGT
GCCACAAGAGTACTGGTTTCTCGACAGGACCCAGGGCACGGCCTACACACTGGAAGCAAACTGTGATCTATCTGGAGGAT
GTCATCACCATCTGCGAGGGTGAGGCATTGACAGGCACAATGAGCGTCTCTCAGAACAAGAAGAATCCTCGTGACTTAGA
TGTGACTGTCTCATACAATTTCAACGGGAAAAGGTCGCAAGCTACAAGAACACAACATTATCGCATGCGTTGA
Microexon DNA seq GCATTCATGAA
Microexon Amino Acid seq GIHE
Microexon-tag DNA Seq TCTGACCATACTAGCTCAGATTATTACTTTGATTCATACGCACATTTCGGCATTCATGAAGAGATGTTGAAGGATACAGTGAGAACAAAGACGTATCAGAATGCCATC
Microexon-tag Amino Acid seq SDHTSSDYYFDSYAHFGIHEEMLKDTVRTKTYQNAI
Transcript ID Pp3c10_9950V3.1
Gene ID Pp.2020
Gene Name NA
Pfam domain motif PRMT5
Motif E-value 0.00028
Motif start 64
Motif end 166
Protein seq >Pp3c10_9950V3.1
MSSMDVADTVSAEAMAVEGEAVTTPEPLITSIRIEGDEGVGMPSDHTSSDYYFDSYAHFGIHEEMLKDTVRTKTYQNAIY
QNGFLFKDKVVLDVGAGTGVLSLFCAKGGAKHVYAVECSTMADTAREIVKANGYSDVVTVIKGKLEEITLPVDKVDIIIS
EWMGYFLLFENMLDTVLYARDKWLVPGGLVMPDRTSLYLTAIEDAEYKQEKINFWEQVYGFDMSCIKKQAMVEPLVDVVD
ANQIVTHATHLKTMDISKMNTGDASFTARFKLVATRNDFIHALVAYFDVTFSMCHKSTGFSTGPRARPTHWKQTVIYLED
VITICEGEALTGTMSVSQNKKNPRDLDVTVSYNFNGKRSQATRTQHYRMR*
CDS seq >Pp3c10_9950V3.1
ATGTCTTCGATGGACGTCGCTGACACAGTAAGTGCGGAGGCTATGGCTGTTGAAGGCGAGGCGGTGACCACGCCGGAGCC
ACTGATCACCTCAATTCGGATTGAGGGTGACGAGGGAGTTGGGATGCCGTCTGACCATACTAGCTCAGATTATTACTTTG
ATTCATACGCACATTTCGGCATTCATGAAGAGATGTTGAAGGATACAGTGAGAACAAAGACGTATCAGAATGCCATCTAT
CAAAATGGTTTTTTATTCAAGGATAAAGTCGTTCTTGATGTGGGAGCGGGCACCGGTGTTCTTTCCCTTTTCTGTGCCAA
GGGAGGAGCTAAGCACGTATATGCGGTGGAATGCTCGACGATGGCGGATACTGCTAGGGAGATTGTGAAGGCCAACGGCT
ACAGCGATGTGGTCACAGTCATCAAAGGAAAGTTGGAGGAGATCACTCTGCCAGTTGACAAAGTCGACATTATTATCTCA
GAGTGGATGGGCTACTTTCTTCTTTTTGAAAACATGCTGGACACCGTACTTTATGCTCGAGACAAATGGTTGGTCCCTGG
AGGTCTGGTTATGCCCGATAGAACTTCACTGTATCTTACTGCCATTGAAGATGCTGAATACAAACAGGAGAAAATTAACT
TTTGGGAGCAGGTTTATGGATTTGACATGAGCTGTATCAAGAAACAAGCGATGGTCGAACCTCTGGTGGATGTAGTCGAT
GCTAATCAGATTGTGACACATGCAACACACTTGAAGACTATGGACATCAGCAAGATGAACACTGGGGATGCTTCTTTCAC
AGCTCGCTTCAAATTAGTGGCTACTCGAAACGATTTTATACATGCTTTGGTCGCGTACTTCGATGTTACGTTTTCAATGT
GCCACAAGAGTACTGGTTTCTCGACAGGACCCAGGGCACGGCCTACACACTGGAAGCAAACTGTGATCTATCTGGAGGAT
GTCATCACCATCTGCGAGGGTGAGGCATTGACAGGCACAATGAGCGTCTCTCAGAACAAGAAGAATCCTCGTGACTTAGA
TGTGACTGTCTCATACAATTTCAACGGGAAAAGGTCGCAAGCTACAAGAACACAACATTATCGCATGCGTTGA