
Microexon ID | Pp_1:25374405-25374415:+ |
Species | Physcomitrium patens | Coordinates | 1:25374405..25374415 |
Microexon Cluster ID | MEP26 |
Size | 11 |
Phase | 1 |
Pfam Domain Motif | PRMT5 |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 49,11,48 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | RRYGAYAARACCAGYGCYGAYTAYTACTTCGAYTCCTACTCYCAYTTYGGTATTCATGAAGAAATGYTGAARGATRYWGTGAGRACWAARACWTAYCAAAATGTTATY |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | GCATTCATGAA |
Microexon Amino Acid seq | GIHE |
Microexon-tag DNA Seq | TTAGAGCATACAAGTTCGGATTATTACTTCGATTCCTATGCGCATTTCGGCATTCATGAAGAGATGTTGAAGGATACTGTGAGAACAAAGGCGTACCAAAATGTTATC |
Microexon-tag Amino Acid Seq | LEHTSSDYYFDSYAHFGIHEEMLKDTVRTKAYQNVI |
Microexon-tag spanning region | 25373987-25374748 |
Microexon-tag prediction score | 0.9231 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | Pp3c1_36400V3.2x |
Reference Transcript ID | Pp3c1_36400V3.2 |
Gene ID | Pp3c1_36400 |
Gene Name | NA |
Transcript ID | Pp3c1_36400V3.2 |
Protein ID | Pp3c1_36400V3.2 |
Gene ID | Pp3c1_36400 |
Gene Name | NA |
Pfam domain motif | Unknown |
Motif E-value | NA |
Motif start | NA |
Motif end | NA |
Protein seq | >Pp3c1_36400V3.2 MGRRNKGKAVKEGASLINVANGNVVEAMAAEEGDVKAISVPSIATAQIESDQGVVTPLEHTSSDYYFDSYAHFGIHEEML KDTVRTKAYQNVIYQNSFLCKDKTVLDVGVGTGILSLFCAKSGAKHVYAVECSTMADTAREIVKANGYSDGECGKWVLCR TAIHGHWLKSKAQFT* |
CDS seq | >Pp3c1_36400V3.2 ATGGGACGTCGGAACAAAGGGAAGGCGGTGAAGGAGGGGGCGTCGCTCATTAACGTTGCCAACGGGAATGTAGTCGAAGC TATGGCTGCAGAGGAGGGGGACGTTAAAGCCATCTCGGTGCCTTCAATCGCCACTGCTCAGATTGAGAGCGATCAGGGTG TGGTCACGCCGTTAGAGCATACAAGTTCGGATTATTACTTCGATTCCTATGCGCATTTCGGCATTCATGAAGAGATGTTG AAGGATACTGTGAGAACAAAGGCGTACCAAAATGTTATCTATCAGAATAGTTTTTTATGTAAAGACAAAACAGTTCTGGA TGTTGGAGTGGGGACAGGTATTCTCTCTCTCTTCTGCGCCAAGAGTGGGGCGAAGCATGTATACGCGGTGGAATGTTCGA CAATGGCAGATACTGCAAGAGAGATTGTGAAAGCCAACGGGTACAGTGACGGTGAGTGTGGTAAATGGGTGCTCTGCAGA ACTGCAATACATGGCCATTGGTTGAAAAGTAAAGCACAGTTTACGTAA |
Microexon DNA seq | GCATTCATGAA |
Microexon Amino Acid seq | GIHE |
Microexon-tag DNA Seq | TTAGAGCATACAAGTTCGGATTATTACTTCGATTCCTATGCGCATTTCGGCATTCATGAAGAGATGTTGAAGGATACTGTGAGAACAAAGGCGTACCAAAATGTTATC |
Microexon-tag Amino Acid seq | LEHTSSDYYFDSYAHFGIHEEMLKDTVRTKAYQNVI |
Transcript ID | Pp3c1_36400V3.2 |
Gene ID | Pp.1403 |
Gene Name | NA |
Pfam domain motif | Unknown |
Motif E-value | NA |
Motif start | NA |
Motif end | NA |
Protein seq | >Pp3c1_36400V3.2 MGRRNKGKAVKEGASLINVANGNVVEAMAAEEGDVKAISVPSIATAQIESDQGVVTPLEHTSSDYYFDSYAHFGIHEEML KDTVRTKAYQNVIYQNSFLCKDKTVLDVGVGTGILSLFCAKSGAKHVYAVECSTMADTAREIVKANGYSDGECGKWVLCR TAIHGHWLKSKAQFT* |
CDS seq | >Pp3c1_36400V3.2 ATGGGACGTCGGAACAAAGGGAAGGCGGTGAAGGAGGGGGCGTCGCTCATTAACGTTGCCAACGGGAATGTAGTCGAAGC TATGGCTGCAGAGGAGGGGGACGTTAAAGCCATCTCGGTGCCTTCAATCGCCACTGCTCAGATTGAGAGCGATCAGGGTG TGGTCACGCCGTTAGAGCATACAAGTTCGGATTATTACTTCGATTCCTATGCGCATTTCGGCATTCATGAAGAGATGTTG AAGGATACTGTGAGAACAAAGGCGTACCAAAATGTTATCTATCAGAATAGTTTTTTATGTAAAGACAAAACAGTTCTGGA TGTTGGAGTGGGGACAGGTATTCTCTCTCTCTTCTGCGCCAAGAGTGGGGCGAAGCATGTATACGCGGTGGAATGTTCGA CAATGGCAGATACTGCAAGAGAGATTGTGAAAGCCAACGGGTACAGTGACGGTGAGTGTGGTAAATGGGTGCTCTGCAGA ACTGCAATACATGGCCATTGGTTGAAAAGTAAAGCACAGTTTACGTAA |