Microexon ID Pp_1:25374405-25374415:+
Species Physcomitrium patens
Coordinates 1:25374405..25374415
Microexon Cluster ID MEP26
Size 11
Phase 1
Pfam Domain Motif PRMT5
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) 49,11,48
Microexon location in the Microexon-tag 2
Microexon-tag DNA Seq RRYGAYAARACCAGYGCYGAYTAYTACTTCGAYTCCTACTCYCAYTTYGGTATTCATGAAGAAATGYTGAARGATRYWGTGAGRACWAARACWTAYCAAAATGTTATY
Logo of Microexon-tag DNA Seq NT60 Logo
Alignment of exons MSA
Microexon DNA seq GCATTCATGAA
Microexon Amino Acid seq GIHE
Microexon-tag DNA Seq TTAGAGCATACAAGTTCGGATTATTACTTCGATTCCTATGCGCATTTCGGCATTCATGAAGAGATGTTGAAGGATACTGTGAGAACAAAGGCGTACCAAAATGTTATC
Microexon-tag Amino Acid Seq LEHTSSDYYFDSYAHFGIHEEMLKDTVRTKAYQNVI
Microexon-tag spanning region25373987-25374748
Microexon-tag prediction score0.9231
Overlapped with the annotated transcript (%) 100
New Transcript ID Pp3c1_36400V3.2x
Reference Transcript ID Pp3c1_36400V3.2
Gene ID Pp3c1_36400
Gene Name NA
Transcript ID Pp3c1_36400V3.2
Protein ID Pp3c1_36400V3.2
Gene ID Pp3c1_36400
Gene Name NA
Pfam domain motif Unknown
Motif E-value NA
Motif start NA
Motif end NA
Protein seq >Pp3c1_36400V3.2
MGRRNKGKAVKEGASLINVANGNVVEAMAAEEGDVKAISVPSIATAQIESDQGVVTPLEHTSSDYYFDSYAHFGIHEEML
KDTVRTKAYQNVIYQNSFLCKDKTVLDVGVGTGILSLFCAKSGAKHVYAVECSTMADTAREIVKANGYSDGECGKWVLCR
TAIHGHWLKSKAQFT*
CDS seq >Pp3c1_36400V3.2
ATGGGACGTCGGAACAAAGGGAAGGCGGTGAAGGAGGGGGCGTCGCTCATTAACGTTGCCAACGGGAATGTAGTCGAAGC
TATGGCTGCAGAGGAGGGGGACGTTAAAGCCATCTCGGTGCCTTCAATCGCCACTGCTCAGATTGAGAGCGATCAGGGTG
TGGTCACGCCGTTAGAGCATACAAGTTCGGATTATTACTTCGATTCCTATGCGCATTTCGGCATTCATGAAGAGATGTTG
AAGGATACTGTGAGAACAAAGGCGTACCAAAATGTTATCTATCAGAATAGTTTTTTATGTAAAGACAAAACAGTTCTGGA
TGTTGGAGTGGGGACAGGTATTCTCTCTCTCTTCTGCGCCAAGAGTGGGGCGAAGCATGTATACGCGGTGGAATGTTCGA
CAATGGCAGATACTGCAAGAGAGATTGTGAAAGCCAACGGGTACAGTGACGGTGAGTGTGGTAAATGGGTGCTCTGCAGA
ACTGCAATACATGGCCATTGGTTGAAAAGTAAAGCACAGTTTACGTAA
Microexon DNA seq GCATTCATGAA
Microexon Amino Acid seq GIHE
Microexon-tag DNA Seq TTAGAGCATACAAGTTCGGATTATTACTTCGATTCCTATGCGCATTTCGGCATTCATGAAGAGATGTTGAAGGATACTGTGAGAACAAAGGCGTACCAAAATGTTATC
Microexon-tag Amino Acid seq LEHTSSDYYFDSYAHFGIHEEMLKDTVRTKAYQNVI
Transcript ID Pp3c1_36400V3.2
Gene ID Pp.1403
Gene Name NA
Pfam domain motif Unknown
Motif E-value NA
Motif start NA
Motif end NA
Protein seq >Pp3c1_36400V3.2
MGRRNKGKAVKEGASLINVANGNVVEAMAAEEGDVKAISVPSIATAQIESDQGVVTPLEHTSSDYYFDSYAHFGIHEEML
KDTVRTKAYQNVIYQNSFLCKDKTVLDVGVGTGILSLFCAKSGAKHVYAVECSTMADTAREIVKANGYSDGECGKWVLCR
TAIHGHWLKSKAQFT*
CDS seq >Pp3c1_36400V3.2
ATGGGACGTCGGAACAAAGGGAAGGCGGTGAAGGAGGGGGCGTCGCTCATTAACGTTGCCAACGGGAATGTAGTCGAAGC
TATGGCTGCAGAGGAGGGGGACGTTAAAGCCATCTCGGTGCCTTCAATCGCCACTGCTCAGATTGAGAGCGATCAGGGTG
TGGTCACGCCGTTAGAGCATACAAGTTCGGATTATTACTTCGATTCCTATGCGCATTTCGGCATTCATGAAGAGATGTTG
AAGGATACTGTGAGAACAAAGGCGTACCAAAATGTTATCTATCAGAATAGTTTTTTATGTAAAGACAAAACAGTTCTGGA
TGTTGGAGTGGGGACAGGTATTCTCTCTCTCTTCTGCGCCAAGAGTGGGGCGAAGCATGTATACGCGGTGGAATGTTCGA
CAATGGCAGATACTGCAAGAGAGATTGTGAAAGCCAACGGGTACAGTGACGGTGAGTGTGGTAAATGGGTGCTCTGCAGA
ACTGCAATACATGGCCATTGGTTGAAAAGTAAAGCACAGTTTACGTAA