
Microexon ID | Zm_5:72779203-72779212:+ |
Species | Zea mays | Coordinates | 5:72779203..72779212 |
Microexon Cluster ID | MEP25 |
Size | 10 |
Phase | 2 |
Pfam Domain Motif | CDP-OH_P_transf |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 50,10,48 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | YTSCARCCYTTYTGGASYCGHTKYGTYAMYYTCTTCCCYCTTTGGATGCCRCCAAAYATGATWACACTTAYRGGATTYATGTTYYTRSTBAYATCTGCAYTGCTTGGC |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | ACCGAACATG |
Microexon Amino Acid seq | PPNM |
Microexon-tag DNA Seq | CTCCAGCCCTTCTGGTCCCGATTCGTCAACATCTTCCCGCTATGGTTCCCACCGAACATGATTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGC |
Microexon-tag Amino Acid Seq | LQPFWSRFVNIFPLWFPPNMITLTGFMFLLTSAFLG |
Microexon-tag spanning region | 72778590-72779342 |
Microexon-tag prediction score | 0.9682 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | Zm00001d015029_T002x |
Reference Transcript ID | Zm00001d015029_T002 |
Gene ID | Zm00001d015029 |
Gene Name | NA |
Transcript ID | Zm00001d015029_T002 |
Protein ID | Zm00001d015029_P002 |
Gene ID | Zm00001d015029 |
Gene Name | NA |
Pfam domain motif | CDP-OH_P_transf |
Motif E-value | 1.7e-16 |
Motif start | 47 |
Motif end | 120 |
Protein seq | >Zm00001d015029_P002 MGYIGHHGVATLRRYKYSGVDHSLVAKYILQPFWSRFVNIFPLWFPPNMITLTGFMFLLTSAFLGFLYSPHLDTAPPRWV HLAHGLLLFLYQTFDAVDGKQARRTNSSSPLGELFDHGCDALACAFESLAFGSTAMCGKATFWFWFISAVPFYFATWEHF FTNTLILPIVNGPTEGLMLIYLCHFFTFFTGAEWWAQDFQKSMPLLGWVPLISEIPVYDIVLCLMIAFAVIPTIGSNIHN VYKVVEARKGSMLLALAMLFPFGLLLAGVLVWSYLSPSDIMRTQPHLLIIGTGFAFGFLVGRMILAHLCDEPKGLKTGMC MSLAYFPFAIANALTARLDDGNPLVDEQLVLLMYCLFTVALYMHFATSVIHEITNALGIHCFRITRKKA* |
CDS seq | >Zm00001d015029_T002 ATGGGTTACATTGGCCACCACGGCGTCGCCACGCTGCGGCGCTACAAGTACAGCGGCGTCGACCACTCGCTCGTCGCCAA GTACATCCTCCAGCCCTTCTGGTCCCGATTCGTCAACATCTTCCCGCTATGGTTCCCACCGAACATGATTACACTGACAG GTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTTTTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTT CACCTTGCTCATGGACTGCTTCTCTTTCTTTATCAGACTTTTGATGCTGTGGATGGAAAACAAGCAAGGCGTACCAACTC ATCAAGTCCTCTAGGCGAGCTTTTTGACCACGGATGTGATGCGCTTGCGTGTGCTTTTGAATCCTTGGCTTTTGGAAGCA CGGCGATGTGTGGAAAGGCTACCTTCTGGTTTTGGTTCATTTCAGCTGTCCCATTTTACTTCGCAACCTGGGAACACTTT TTTACAAATACACTTATTCTTCCTATAGTCAACGGACCAACTGAAGGCCTTATGCTGATCTACTTGTGCCATTTTTTCAC CTTTTTCACAGGAGCCGAGTGGTGGGCACAGGATTTTCAGAAGTCAATGCCCCTGCTGGGTTGGGTTCCTCTTATCTCTG AAATCCCGGTGTATGACATTGTGCTATGTCTTATGATTGCTTTTGCTGTAATCCCAACAATTGGATCTAACATCCACAAT GTATATAAAGTCGTTGAAGCAAGAAAAGGAAGCATGCTTCTGGCACTAGCCATGCTCTTTCCTTTTGGTTTGCTCTTGGC TGGAGTTCTTGTCTGGTCCTACCTTTCTCCTTCAGATATAATGAGAACCCAACCACATTTGCTAATTATTGGAACTGGTT TTGCATTTGGATTTCTTGTGGGAAGAATGATTCTGGCTCACTTGTGTGATGAACCCAAGGGTTTGAAAACAGGGATGTGC ATGTCCCTTGCGTATTTTCCATTTGCAATTGCAAACGCGTTGACTGCCCGGCTTGATGATGGAAATCCACTCGTTGATGA GCAGCTAGTGCTCCTGATGTACTGCCTATTTACAGTGGCTCTGTACATGCATTTTGCTACATCAGTTATTCATGAGATCA CCAATGCACTCGGGATCCACTGCTTCAGGATCACTAGGAAAAAGGCATAG |
Microexon DNA seq | ACCGAACATG |
Microexon Amino Acid seq | PPNM |
Microexon-tag DNA Seq | CTCCAGCCCTTCTGGTCCCGATTCGTCAACATCTTCCCGCTATGGTTCCCACCGAACATGATTACACTGACAGGTTTCATGTTTCTACTGACATCAGCATTCCTTGGC |
Microexon-tag Amino Acid seq | LQPFWSRFVNIFPLWFPPNMITLTGFMFLLTSAFLG |
Transcript ID | Zm00001d015029_T002 |
Gene ID | Zm.23315 |
Gene Name | NA |
Pfam domain motif | CDP-OH_P_transf |
Motif E-value | 1.7e-16 |
Motif start | 47 |
Motif end | 120 |
Protein seq | >Zm00001d015029_T002 MGYIGHHGVATLRRYKYSGVDHSLVAKYILQPFWSRFVNIFPLWFPPNMITLTGFMFLLTSAFLGFLYSPHLDTAPPRWV HLAHGLLLFLYQTFDAVDGKQARRTNSSSPLGELFDHGCDALACAFESLAFGSTAMCGKATFWFWFISAVPFYFATWEHF FTNTLILPIVNGPTEGLMLIYLCHFFTFFTGAEWWAQDFQKSMPLLGWVPLISEIPVYDIVLCLMIAFAVIPTIGSNIHN VYKVVEARKGSMLLALAMLFPFGLLLAGVLVWSYLSPSDIMRTQPHLLIIGTGFAFGFLVGRMILAHLCDEPKGLKTGMC MSLAYFPFAIANALTARLDDGNPLVDEQLVLLMYCLFTVALYMHFATSVIHEITNALGIHCFRITRKKA* |
CDS seq | >Zm00001d015029_T002 ATGGGTTACATTGGCCACCACGGCGTCGCCACGCTGCGGCGCTACAAGTACAGCGGCGTCGACCACTCGCTCGTCGCCAA GTACATCCTCCAGCCCTTCTGGTCCCGATTCGTCAACATCTTCCCGCTATGGTTCCCACCGAACATGATTACACTGACAG GTTTCATGTTTCTACTGACATCAGCATTCCTTGGCTTTTTATATTCACCCCATCTAGATACAGCACCCCCCAGATGGGTT CACCTTGCTCATGGACTGCTTCTCTTTCTTTATCAGACTTTTGATGCTGTGGATGGAAAACAAGCAAGGCGTACCAACTC ATCAAGTCCTCTAGGCGAGCTTTTTGACCACGGATGTGATGCGCTTGCGTGTGCTTTTGAATCCTTGGCTTTTGGAAGCA CGGCGATGTGTGGAAAGGCTACCTTCTGGTTTTGGTTCATTTCAGCTGTCCCATTTTACTTCGCAACCTGGGAACACTTT TTTACAAATACACTTATTCTTCCTATAGTCAACGGACCAACTGAAGGCCTTATGCTGATCTACTTGTGCCATTTTTTCAC CTTTTTCACAGGAGCCGAGTGGTGGGCACAGGATTTTCAGAAGTCAATGCCCCTGCTGGGTTGGGTTCCTCTTATCTCTG AAATCCCGGTGTATGACATTGTGCTATGTCTTATGATTGCTTTTGCTGTAATCCCAACAATTGGATCTAACATCCACAAT GTATATAAAGTCGTTGAAGCAAGAAAAGGAAGCATGCTTCTGGCACTAGCCATGCTCTTTCCTTTTGGTTTGCTCTTGGC TGGAGTTCTTGTCTGGTCCTACCTTTCTCCTTCAGATATAATGAGAACCCAACCACATTTGCTAATTATTGGAACTGGTT TTGCATTTGGATTTCTTGTGGGAAGAATGATTCTGGCTCACTTGTGTGATGAACCCAAGGGTTTGAAAACAGGGATGTGC ATGTCCCTTGCGTATTTTCCATTTGCAATTGCAAACGCGTTGACTGCCCGGCTTGATGATGGAAATCCACTCGTTGATGA GCAGCTAGTGCTCCTGATGTACTGCCTATTTACAGTGGCTCTGTACATGCATTTTGCTACATCAGTTATTCATGAGATCA CCAATGCACTCGGGATCCACTGCTTCAGGATCACTAGGAAAAAGGCATAG |