
Microexon ID | Pt_8:6965731-6965740:- |
Species | Populus Trichocarpa | Coordinates | 8:6965731..6965740 |
Microexon Cluster ID | MEP25 |
Size | 10 |
Phase | 2 |
Pfam Domain Motif | CDP-OH_P_transf |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 50,10,48 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | YTSCARCCYTTYTGGASYCGHTKYGTYAMYYTCTTCCCYCTTTGGATGCCRCCAAAYATGATWACACTTAYRGGATTYATGTTYYTRSTBAYATCTGCAYTGCTTGGC |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | GCCGAATATG |
Microexon Amino Acid seq | PPNM |
Microexon-tag DNA Seq | TTGCAACCGTTTTGGGCTCGCTTTGTTAACCTCTTCCCTCTTTGGATGCCGCCGAATATGATTACGCTTATGGGATTTATGTTCTTAGTGACTTCGGCATTTCTCGGT |
Microexon-tag Amino Acid Seq | MQPFWARFVNLFPLWMPPNMITLMGFMFLVTSAFLG |
Microexon-tag spanning region | 6965569-6965922 |
Microexon-tag prediction score | 0.9643 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | Potri.008G109833.1.v4.1x |
Reference Transcript ID | Potri.008G109833.1.v4.1 |
Gene ID | Potri.008G109833.v4.1 |
Gene Name | NA |
Transcript ID | Potri.008G109833.1.v4.1 |
Protein ID | |
Gene ID | Potri.008G109833.v4.1 |
Gene Name | |
Pfam domain motif | CDP-OH_P_transf |
Motif E-value | 1.80E-10 |
Motif start | 46 |
Motif end | 188 |
Protein seq | >Potri.008G109833.1.v4.1 MGYIGSHGIAALHKYKYSGVDHSCVAKYVLQPFWARFVNLFPLWMPPNMITLMGFMFLVTSAFLGYIYSPRLDTPPPRWV HFAHGLLLFLYQTFDAVDGKQARRTNSSSPLGELFDHGCDALACAFESMAFGSTAMCGRDTFWFWLISAVPFYCATWENF FTNTLILPAINGPTEGLMLIYMAHFLTAVVGAGWWAQQFAMSFPFLSWLPFVSEIPTYRVVQFLMTAFAVIPTVGFNVSN VYKVVQARKGSMLLALAMLYPFVVLVGGVLLWDYLSPSDLMSNYPHLVILGTGLAFGFLVGRMILSHLCDEPKGLKTNMC MSLLYLPFAIANALAARLNDGVALVDEFWVLLGYCVFTMGLYLHLATSVIHEITTALGICCFRITRKKA* |
CDS seq | >Potri.008G109833.1.v4.1 ATGGGATATATAGGGTCACATGGAATAGCAGCACTGCACAAATACAAATACAGTGGAGTAGATCACTCTTGTGTTGCTAA ATATGTTTTGCAACCGTTTTGGGCTCGCTTTGTTAACCTCTTCCCTCTTTGGATGCCGCCGAATATGATTACGCTTATGG GATTTATGTTCTTAGTGACTTCGGCATTTCTCGGTTATATTTATTCACCTCGCTTGGATACGCCTCCGCCGAGATGGGTT CATTTTGCGCACGGATTGCTTCTATTTTTATATCAGACTTTTGATGCTGTTGATGGAAAACAAGCTCGGCGGACAAACTC GTCCAGTCCACTGGGGGAGCTTTTTGACCATGGATGTGATGCGCTTGCTTGTGCGTTCGAAAGCATGGCTTTTGGTAGCA CTGCCATGTGTGGAAGAGATACTTTCTGGTTTTGGCTTATTTCAGCAGTTCCATTTTATTGTGCAACATGGGAAAACTTT TTCACCAATACTCTTATTCTTCCAGCAATTAATGGACCTACAGAGGGTCTGATGCTAATATACATGGCTCATTTTCTTAC AGCTGTAGTCGGTGCCGGGTGGTGGGCTCAACAGTTTGCGATGTCTTTCCCATTCTTGAGTTGGTTGCCATTTGTAAGTG AAATCCCTACTTACAGAGTTGTGCAGTTTTTAATGACAGCTTTTGCTGTTATACCTACAGTGGGATTCAATGTGTCTAAT GTCTACAAGGTTGTTCAAGCAAGAAAAGGCAGCATGTTGCTGGCTTTAGCAATGCTTTACCCTTTTGTTGTGCTCGTTGG CGGAGTCCTATTGTGGGATTATCTGTCTCCATCTGATCTAATGTCAAACTATCCTCATTTGGTCATATTGGGAACTGGAC TTGCATTTGGGTTTCTTGTGGGAAGGATGATTTTGTCTCACTTGTGTGATGAACCGAAGGGATTGAAAACCAACATGTGT ATGTCTCTGTTATATCTACCATTTGCCATCGCAAATGCACTCGCAGCCAGACTGAATGATGGAGTTGCTTTAGTTGATGA GTTCTGGGTTCTTCTTGGTTACTGTGTATTCACAATGGGACTCTATTTGCACTTAGCCACATCTGTCATCCATGAAATTA CAACAGCTCTGGGAATATGCTGCTTCAGGATAACTAGGAAGAAGGCATGA |
Pt_8:6965731-6965740:- does not have available information here.