Microexon ID Zm_9:19447946-19447955:-
Species Zea mays
Coordinates 9:19447946..19447955
Microexon Cluster ID MEP24
Size 10
Phase 1
Pfam Domain Motif Ham1p_like
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) 49,10,32,17
Microexon location in the Microexon-tag 2
Microexon-tag DNA Seq YTKGTKGARGAYACTTGYCTCTGYTTCAATGCMYTCAARGGTCTTCCAGGGCCYTACATMAARTGGTTTCTGSAGAAGATTGGTCATGAAGGTYTGAACAAYTTGYTR
Logo of Microexon-tag DNA Seq NT60 Logo
Alignment of exons MSA
Microexon DNA seq GACCCTACAT
Microexon Amino Acid seq GPYI
Microexon-tag DNA Seq CTGGTGGAGGACACCTGCCTATGTTTTAATGCGCTCAAAGGCCTACCAGGACCCTACATAAAGTGGTTTCTTGAGAAGATTGGGCATGAAGGTTTAAATAATCTGTTA
Microexon-tag Amino Acid Seq MVEDTCLCFNALKGLPGPYIKWFLEKIGHEGLNNLL
Microexon-tag spanning region19447634-19448086
Microexon-tag prediction score0.9742
Overlapped with the annotated transcript (%) 100
New Transcript ID Zm00001d045356_T001x
Reference Transcript ID Zm00001d045356_T001
Gene ID Zm00001d045356
Gene Name NA
Transcript ID Zm00001d045356_T001
Protein ID Zm00001d045356_P001
Gene ID Zm00001d045356
Gene Name NA
Pfam domain motif Ham1p_like
Motif E-value 2.2e-41
Motif start 63
Motif end 188
Protein seq >Zm00001d045356_P001
MLASEFPLLLNNRSSLPRLVTLCDQTPSMPFDVVRNVVEKQLGKNFDDMFEFFDVEPVGSASIAQVNGPVLVEDTCLCFN
ALKGLPGPYIKWFLEKIGHEGLNNLLKAYEDKSAFAMCIFSLALGPGEEPITFVGKTAGKIVSARGPNDFGWDPVFQPDG
FEQTYAEMPKSVKNEISHRGKALALVKEHFASASYTVQSDDSA*
CDS seq >Zm00001d045356_T001
ATGCTAGCATCGGAGTTCCCTCTACTGCTGAACAATCGTTCTTCATTACCAAGACTTGTTACGTTGTGTGATCAAACCCC
ATCCATGCCATTTGATGTGGTTAGAAATGTTGTGGAGAAACAGTTGGGGAAGAACTTCGATGACATGTTTGAATTCTTCG
ATGTCGAGCCTGTTGGGTCTGCTTCTATTGCACAGGTGAATGGGCCTGTACTGGTGGAGGACACCTGCCTATGTTTTAAT
GCGCTCAAAGGCCTACCAGGACCCTACATAAAGTGGTTTCTTGAGAAGATTGGGCATGAAGGTTTAAATAATCTGTTAAA
AGCTTATGAAGATAAATCAGCGTTCGCTATGTGCATCTTCTCTCTTGCTCTTGGACCTGGAGAGGAACCAATCACATTTG
TTGGCAAAACTGCGGGAAAGATCGTGTCTGCTAGAGGCCCTAACGATTTTGGGTGGGATCCTGTGTTCCAGCCAGATGGT
TTTGAACAAACATATGCTGAGATGCCCAAGTCAGTGAAGAACGAAATATCTCATAGAGGGAAAGCTCTTGCTCTGGTGAA
AGAACACTTCGCATCTGCTAGCTATACAGTTCAGAGCGACGACTCAGCTTAA
Microexon DNA seq GACCCTACAT
Microexon Amino Acid seq GPYI
Microexon-tag DNA Seq CTGGTGGAGGACACCTGCCTATGTTTTAATGCGCTCAAAGGCCTACCAGGACCCTACATAAAGTGGTTTCTTGAGAAGATTGGGCATGAAGGTTTAAATAATCTGTTA
Microexon-tag Amino Acid seq MVEDTCLCFNALKGLPGPYIKWFLEKIGHEGLNNLL
Transcript ID Zm00001d045356_T001
Gene ID Zm00001d045356
Gene Name NA
Pfam domain motif Ham1p_like
Motif E-value 2.2e-41
Motif start 63
Motif end 188
Protein seq >Zm00001d045356_T001
MLASEFPLLLNNRSSLPRLVTLCDQTPSMPFDVVRNVVEKQLGKNFDDMFEFFDVEPVGSASIAQVNGPVLVEDTCLCFN
ALKGLPGPYIKWFLEKIGHEGLNNLLKAYEDKSAFAMCIFSLALGPGEEPITFVGKTAGKIVSARGPNDFGWDPVFQPDG
FEQTYAEMPKSVKNEISHRGKALALVKEHFASASYTVQSDDSA*
CDS seq >Zm00001d045356_T001
ATGCTAGCATCGGAGTTCCCTCTACTGCTGAACAATCGTTCTTCATTACCAAGACTTGTTACGTTGTGTGATCAAACCCC
ATCCATGCCATTTGATGTGGTTAGAAATGTTGTGGAGAAACAGTTGGGGAAGAACTTCGATGACATGTTTGAATTCTTCG
ATGTCGAGCCTGTTGGGTCTGCTTCTATTGCACAGGTGAATGGGCCTGTACTGGTGGAGGACACCTGCCTATGTTTTAAT
GCGCTCAAAGGCCTACCAGGACCCTACATAAAGTGGTTTCTTGAGAAGATTGGGCATGAAGGTTTAAATAATCTGTTAAA
AGCTTATGAAGATAAATCAGCGTTCGCTATGTGCATCTTCTCTCTTGCTCTTGGACCTGGAGAGGAACCAATCACATTTG
TTGGCAAAACTGCGGGAAAGATCGTGTCTGCTAGAGGCCCTAACGATTTTGGGTGGGATCCTGTGTTCCAGCCAGATGGT
TTTGAACAAACATATGCTGAGATGCCCAAGTCAGTGAAGAACGAAATATCTCATAGAGGGAAAGCTCTTGCTCTGGTGAA
AGAACACTTCGCATCTGCTAGCTATACAGTTCAGAGCGACGACTCAGCTTAA