
Microexon ID | Zm_9:19447946-19447955:- |
Species | Zea mays | Coordinates | 9:19447946..19447955 |
Microexon Cluster ID | MEP24 |
Size | 10 |
Phase | 1 |
Pfam Domain Motif | Ham1p_like |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 49,10,32,17 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | YTKGTKGARGAYACTTGYCTCTGYTTCAATGCMYTCAARGGTCTTCCAGGGCCYTACATMAARTGGTTTCTGSAGAAGATTGGTCATGAAGGTYTGAACAAYTTGYTR |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | GACCCTACAT |
Microexon Amino Acid seq | GPYI |
Microexon-tag DNA Seq | CTGGTGGAGGACACCTGCCTATGTTTTAATGCGCTCAAAGGCCTACCAGGACCCTACATAAAGTGGTTTCTTGAGAAGATTGGGCATGAAGGTTTAAATAATCTGTTA |
Microexon-tag Amino Acid Seq | MVEDTCLCFNALKGLPGPYIKWFLEKIGHEGLNNLL |
Microexon-tag spanning region | 19447634-19448086 |
Microexon-tag prediction score | 0.9742 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | Zm00001d045356_T001x |
Reference Transcript ID | Zm00001d045356_T001 |
Gene ID | Zm00001d045356 |
Gene Name | NA |
Transcript ID | Zm00001d045356_T001 |
Protein ID | Zm00001d045356_P001 |
Gene ID | Zm00001d045356 |
Gene Name | NA |
Pfam domain motif | Ham1p_like |
Motif E-value | 2.2e-41 |
Motif start | 63 |
Motif end | 188 |
Protein seq | >Zm00001d045356_P001 MLASEFPLLLNNRSSLPRLVTLCDQTPSMPFDVVRNVVEKQLGKNFDDMFEFFDVEPVGSASIAQVNGPVLVEDTCLCFN ALKGLPGPYIKWFLEKIGHEGLNNLLKAYEDKSAFAMCIFSLALGPGEEPITFVGKTAGKIVSARGPNDFGWDPVFQPDG FEQTYAEMPKSVKNEISHRGKALALVKEHFASASYTVQSDDSA* |
CDS seq | >Zm00001d045356_T001 ATGCTAGCATCGGAGTTCCCTCTACTGCTGAACAATCGTTCTTCATTACCAAGACTTGTTACGTTGTGTGATCAAACCCC ATCCATGCCATTTGATGTGGTTAGAAATGTTGTGGAGAAACAGTTGGGGAAGAACTTCGATGACATGTTTGAATTCTTCG ATGTCGAGCCTGTTGGGTCTGCTTCTATTGCACAGGTGAATGGGCCTGTACTGGTGGAGGACACCTGCCTATGTTTTAAT GCGCTCAAAGGCCTACCAGGACCCTACATAAAGTGGTTTCTTGAGAAGATTGGGCATGAAGGTTTAAATAATCTGTTAAA AGCTTATGAAGATAAATCAGCGTTCGCTATGTGCATCTTCTCTCTTGCTCTTGGACCTGGAGAGGAACCAATCACATTTG TTGGCAAAACTGCGGGAAAGATCGTGTCTGCTAGAGGCCCTAACGATTTTGGGTGGGATCCTGTGTTCCAGCCAGATGGT TTTGAACAAACATATGCTGAGATGCCCAAGTCAGTGAAGAACGAAATATCTCATAGAGGGAAAGCTCTTGCTCTGGTGAA AGAACACTTCGCATCTGCTAGCTATACAGTTCAGAGCGACGACTCAGCTTAA |
Microexon DNA seq | GACCCTACAT |
Microexon Amino Acid seq | GPYI |
Microexon-tag DNA Seq | CTGGTGGAGGACACCTGCCTATGTTTTAATGCGCTCAAAGGCCTACCAGGACCCTACATAAAGTGGTTTCTTGAGAAGATTGGGCATGAAGGTTTAAATAATCTGTTA |
Microexon-tag Amino Acid seq | MVEDTCLCFNALKGLPGPYIKWFLEKIGHEGLNNLL |
Transcript ID | Zm00001d045356_T001 |
Gene ID | Zm00001d045356 |
Gene Name | NA |
Pfam domain motif | Ham1p_like |
Motif E-value | 2.2e-41 |
Motif start | 63 |
Motif end | 188 |
Protein seq | >Zm00001d045356_T001 MLASEFPLLLNNRSSLPRLVTLCDQTPSMPFDVVRNVVEKQLGKNFDDMFEFFDVEPVGSASIAQVNGPVLVEDTCLCFN ALKGLPGPYIKWFLEKIGHEGLNNLLKAYEDKSAFAMCIFSLALGPGEEPITFVGKTAGKIVSARGPNDFGWDPVFQPDG FEQTYAEMPKSVKNEISHRGKALALVKEHFASASYTVQSDDSA* |
CDS seq | >Zm00001d045356_T001 ATGCTAGCATCGGAGTTCCCTCTACTGCTGAACAATCGTTCTTCATTACCAAGACTTGTTACGTTGTGTGATCAAACCCC ATCCATGCCATTTGATGTGGTTAGAAATGTTGTGGAGAAACAGTTGGGGAAGAACTTCGATGACATGTTTGAATTCTTCG ATGTCGAGCCTGTTGGGTCTGCTTCTATTGCACAGGTGAATGGGCCTGTACTGGTGGAGGACACCTGCCTATGTTTTAAT GCGCTCAAAGGCCTACCAGGACCCTACATAAAGTGGTTTCTTGAGAAGATTGGGCATGAAGGTTTAAATAATCTGTTAAA AGCTTATGAAGATAAATCAGCGTTCGCTATGTGCATCTTCTCTCTTGCTCTTGGACCTGGAGAGGAACCAATCACATTTG TTGGCAAAACTGCGGGAAAGATCGTGTCTGCTAGAGGCCCTAACGATTTTGGGTGGGATCCTGTGTTCCAGCCAGATGGT TTTGAACAAACATATGCTGAGATGCCCAAGTCAGTGAAGAACGAAATATCTCATAGAGGGAAAGCTCTTGCTCTGGTGAA AGAACACTTCGCATCTGCTAGCTATACAGTTCAGAGCGACGACTCAGCTTAA |