
Microexon ID | Zm_4:64875021-64875030:- |
Species | Zea mays | Coordinates | 4:64875021..64875030 |
Microexon Cluster ID | MEP24 |
Size | 10 |
Phase | 1 |
Pfam Domain Motif | Ham1p_like |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 49,10,32,17 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | YTKGTKGARGAYACTTGYCTCTGYTTCAATGCMYTCAARGGTCTTCCAGGGCCYTACATMAARTGGTTTCTGSAGAAGATTGGTCATGAAGGTYTGAACAAYTTGYTR |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | GACCCTACAT |
Microexon Amino Acid seq | GPYI |
Microexon-tag DNA Seq | CTGGTGGAGGACACCTGCTTATGTTTTAATGCGCTCAAAGGCCTACCAGGACCCTACATAAAGTGGTTTCTTGAGAAGATTGGGCATGAAGGTTTAAATAATCTGTTA |
Microexon-tag Amino Acid Seq | MVEDTCLCFNALKGLPGPYIKWFLEKIGHEGLNNLL |
Microexon-tag spanning region | 64874709-64875161 |
Microexon-tag prediction score | 0.9694 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | Zm00001d050084_T001x |
Reference Transcript ID | Zm00001d050084_T001 |
Gene ID | Zm00001d050084 |
Gene Name | NA |
Transcript ID | Zm00001d050084_T001 |
Protein ID | Zm00001d050084_P001 |
Gene ID | Zm00001d050084 |
Gene Name | NA |
Pfam domain motif | Ham1p_like |
Motif E-value | 6.8e-45 |
Motif start | 74 |
Motif end | 227 |
Protein seq | >Zm00001d050084_P001 MLASEFPLLLNNRSSLPRLVTLCDQTPSTPFDVVRNVVEKQLGKNFDDMFEFFDVEPVGSASIAQVHRAKLKLSKTYVAV KAVPELQGEPEYISKEKARIAASQVNGHVLVEDTCLCFNALKGLPGPYIKWFLEKIGHEGLNNLLNSYEDKSVFAMCIFS LALGHGEEPITFVGKTAGKIVPARGPNDFGWDPVFQPDGFEQTYAEMPKSVKNQISHRGKALALVKEHFASASYTVQSDD SA* |
CDS seq | >Zm00001d050084_T001 ATGCTAGCATCGGAGTTCCCTCTACTGCTGAACAATCGTTCTTCATTACCAAGACTTGTTACACTATGTGATCAAACCCC ATCCACGCCATTTGATGTGGTTAGAAATGTTGTGGAGAAACAGTTGGGGAAGAACTTCGATGACATGTTTGAATTCTTCG ATGTCGAGCCTGTTGGGTCTGCTTCTATTGCACAGGTGCATCGAGCAAAGCTTAAATTATCAAAGACATATGTTGCTGTC AAGGCAGTGCCTGAACTGCAAGGGGAGCCAGAGTACATATCCAAAGAGAAAGCACGAATCGCTGCATCTCAGGTGAATGG GCATGTACTGGTGGAGGACACCTGCTTATGTTTTAATGCGCTCAAAGGCCTACCAGGACCCTACATAAAGTGGTTTCTTG AGAAGATTGGGCATGAAGGTTTAAATAATCTGTTAAACTCTTATGAAGATAAATCAGTGTTCGCTATGTGCATCTTCTCT CTTGCTCTTGGACATGGAGAGGAACCAATCACATTTGTTGGCAAAACTGCGGGAAAGATCGTGCCTGCTAGAGGCCCTAA CGATTTTGGGTGGGATCCTGTGTTCCAGCCAGATGGTTTTGAACAAACATATGCTGAGATGCCCAAGTCAGTGAAGAACC AAATATCTCATAGAGGGAAAGCTCTTGCTCTGGTGAAAGAACACTTCGCATCTGCTAGCTATACAGTTCAGAGCGACGAC TCAGCTTAA |
Microexon DNA seq | NA |
Microexon Amino Acid seq | NA |
Microexon-tag DNA Seq | NA |
Microexon-tag Amino Acid seq | NA |
Transcript ID | Zm00001d050084_T001 |
Gene ID | Zm00001d050084 |
Gene Name | NA |
Pfam domain motif | NA |
Motif E-value | NA |
Motif start | NA |
Motif end | NA |
Protein seq | |
CDS seq |