Microexon ID Zm_2:80810418-80810427:-
Species Zea mays
Coordinates 2:80810418..80810427
Microexon Cluster ID MEP24
Size 10
Phase 1
Pfam Domain Motif Ham1p_like
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) 49,10,32,17
Microexon location in the Microexon-tag 2
Microexon-tag DNA Seq YTKGTKGARGAYACTTGYCTCTGYTTCAATGCMYTCAARGGTCTTCCAGGGCCYTACATMAARTGGTTTCTGSAGAAGATTGGTCATGAAGGTYTGAACAAYTTGYTR
Logo of Microexon-tag DNA Seq NT60 Logo
Alignment of exons MSA
Microexon DNA seq GACCCTACAT
Microexon Amino Acid seq GPYI
Microexon-tag DNA Seq CTGGTGGAGGACGCCTGCCTATGTTTTAATGCGCTCAAAGGCCTACCAGGACCCTACATAAAGTGGTTTCTTGAGAAGATTGGGCATGAAGGTTTAAATAATCTGTTA
Microexon-tag Amino Acid Seq MVEDACLCFNALKGLPGPYIKWFLEKIGHEGLNNLL
Microexon-tag spanning region80810106-80810558
Microexon-tag prediction score0.9661
Overlapped with the annotated transcript (%) 70.37
New Transcript ID Zm00001d004080_T001x
Reference Transcript ID Zm00001d004080_T001
Gene ID Zm00001d004080
Gene Name NA
Transcript ID Zm00001d004080_T001
Protein ID Zm00001d004080_P001
Gene ID Zm00001d004080
Gene Name NA
Pfam domain motif Ham1p_like
Motif E-value 5.8e-18
Motif start 20
Motif end 97
Protein seq >Zm00001d004080_P001
MGLYWWRTPAYVLMRSKAYQDPTCLNNLLKAYEDKSAFAMCIFSLALGPGEEPITFVGKTVGKIVPARGPNDFGWDPVFQ
PDGFEQTYAKMPKSVKN*
CDS seq >Zm00001d004080_T001
ATGGGCCTGTACTGGTGGAGGACGCCTGCCTATGTTTTAATGCGCTCAAAGGCCTACCAGGACCCTACATGTTTAAATAA
TCTGTTAAAAGCTTATGAAGATAAATCAGCGTTCGCTATGTGCATCTTCTCTCTTGCTCTTGGACCTGGAGAGGAACCAA
TCACATTTGTTGGCAAAACTGTGGGAAAGATCGTGCCTGCTAGAGGCCCTAACGATTTTGGGTGGGATCCTGTGTTCCAG
CCAGATGGTTTTGAACAAACATATGCTAAGATGCCCAAGTCAGTGAAGAACTAA
Zm_2:80810418-80810427:- does not have available information here.