
Microexon ID | Zm_2:80810418-80810427:- |
Species | Zea mays | Coordinates | 2:80810418..80810427 |
Microexon Cluster ID | MEP24 |
Size | 10 |
Phase | 1 |
Pfam Domain Motif | Ham1p_like |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 49,10,32,17 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | YTKGTKGARGAYACTTGYCTCTGYTTCAATGCMYTCAARGGTCTTCCAGGGCCYTACATMAARTGGTTTCTGSAGAAGATTGGTCATGAAGGTYTGAACAAYTTGYTR |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | GACCCTACAT |
Microexon Amino Acid seq | GPYI |
Microexon-tag DNA Seq | CTGGTGGAGGACGCCTGCCTATGTTTTAATGCGCTCAAAGGCCTACCAGGACCCTACATAAAGTGGTTTCTTGAGAAGATTGGGCATGAAGGTTTAAATAATCTGTTA |
Microexon-tag Amino Acid Seq | MVEDACLCFNALKGLPGPYIKWFLEKIGHEGLNNLL |
Microexon-tag spanning region | 80810106-80810558 |
Microexon-tag prediction score | 0.9661 |
Overlapped with the annotated transcript (%) | 70.37 |
New Transcript ID | Zm00001d004080_T001x |
Reference Transcript ID | Zm00001d004080_T001 |
Gene ID | Zm00001d004080 |
Gene Name | NA |
Transcript ID | Zm00001d004080_T001 |
Protein ID | Zm00001d004080_P001 |
Gene ID | Zm00001d004080 |
Gene Name | NA |
Pfam domain motif | Ham1p_like |
Motif E-value | 5.8e-18 |
Motif start | 20 |
Motif end | 97 |
Protein seq | >Zm00001d004080_P001 MGLYWWRTPAYVLMRSKAYQDPTCLNNLLKAYEDKSAFAMCIFSLALGPGEEPITFVGKTVGKIVPARGPNDFGWDPVFQ PDGFEQTYAKMPKSVKN* |
CDS seq | >Zm00001d004080_T001 ATGGGCCTGTACTGGTGGAGGACGCCTGCCTATGTTTTAATGCGCTCAAAGGCCTACCAGGACCCTACATGTTTAAATAA TCTGTTAAAAGCTTATGAAGATAAATCAGCGTTCGCTATGTGCATCTTCTCTCTTGCTCTTGGACCTGGAGAGGAACCAA TCACATTTGTTGGCAAAACTGTGGGAAAGATCGTGCCTGCTAGAGGCCCTAACGATTTTGGGTGGGATCCTGTGTTCCAG CCAGATGGTTTTGAACAAACATATGCTAAGATGCCCAAGTCAGTGAAGAACTAA |
Zm_2:80810418-80810427:- does not have available information here.