
Microexon ID | At_4:7968213-7968222:- |
Species | Arabidopsis thaliana | Coordinates | 4:7968213..7968222 |
Microexon Cluster ID | MEP24 |
Size | 10 |
Phase | 1 |
Pfam Domain Motif | Ham1p_like |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 49,10,32,17 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | YTKGTKGARGAYACTTGYCTCTGYTTCAATGCMYTCAARGGTCTTCCAGGGCCYTACATMAARTGGTTTCTGSAGAAGATTGGTCATGAAGGTYTGAACAAYTTGYTR |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | GGCCATACAT |
Microexon Amino Acid seq | GPYI |
Microexon-tag DNA Seq | CTTGTGGAAGATACATGTCTCTGTTTCAATGCTTTGAAAGGGCTTCCTGGGCCATACATAAAGTGGTTTCTAGAGAAGCTTGGTCACGAAGGTCTGAACAACTTACTG |
Microexon-tag Amino Acid Seq | LVEDTCLCFNALKGLPGPYIKWFLEKLGHEGLNNLL |
Microexon-tag spanning region | 7967673-7968378 |
Microexon-tag prediction score | 0.9667 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | AT4G13720.1x |
Reference Transcript ID | AT4G13720.1 |
Gene ID | AT4G13720 |
Gene Name | NA |
Transcript ID | AT4G13720.1 |
Protein ID | AT4G13720.1 |
Gene ID | AT4G13720 |
Gene Name | NA |
Pfam domain motif | Ham1p_like |
Motif E-value | 5.9e-52 |
Motif start | 16 |
Motif end | 188 |
Protein seq | >AT4G13720.1 MAAAAAKAAVVLPRPVTFVTGNAKKLEEVKAIIGNSIPFKSLKLDLPELQGEPEDISKEKARLAALQVDGPVLVEDTCLC FNALKGLPGPYIKWFLEKLGHEGLNNLLMAYEDKSAYALCAFSFSRGPGAEPLTFLGKTPGKIVPARGPTDFGWDPVFQP DGYDQTYAEMAKEEKNKISHRYKSLALVKSHFKEAGYVFQTDDGTI* |
CDS seq | >AT4G13720.1 ATGGCGGCGGCGGCGGCGAAAGCAGCGGTGGTTTTGCCACGGCCGGTGACGTTTGTGACTGGAAATGCTAAGAAGCTCGA AGAAGTCAAAGCTATCATCGGAAATTCCATTCCTTTCAAGTCTCTCAAACTCGATTTGCCTGAGCTCCAAGGTGAGCCTG AGGATATTTCCAAAGAGAAGGCTCGTTTGGCTGCTCTTCAGGTGGATGGACCAGTGCTTGTGGAAGATACATGTCTCTGT TTCAATGCTTTGAAAGGGCTTCCTGGGCCATACATAAAGTGGTTTCTAGAGAAGCTTGGTCACGAAGGTCTGAACAACTT ACTGATGGCCTATGAAGATAAATCAGCTTATGCATTGTGCGCATTCTCTTTCTCGCGTGGTCCAGGTGCTGAACCTCTTA CATTTTTGGGGAAAACTCCGGGTAAGATAGTTCCAGCCAGAGGACCAACTGATTTCGGATGGGATCCAGTGTTTCAACCT GATGGATATGACCAAACGTATGCAGAGATGGCAAAGGAAGAAAAGAACAAGATATCACATAGGTACAAGTCTTTAGCATT GGTGAAATCTCACTTTAAGGAGGCTGGCTATGTGTTCCAGACAGATGATGGTACCATTTAA |
Microexon DNA seq | GGCCATACAT |
Microexon Amino Acid seq | GPYI |
Microexon-tag DNA Seq | CTTGTGGAAGATACATGTCTCTGTTTCAATGCTTTGAAAGGGCTTCCTGGGCCATACATAAAGTGGTTTCTAGAGAAGCTTGGTCACGAAGGTCTGAACAACTTACTG |
Microexon-tag Amino Acid seq | LVEDTCLCFNALKGLPGPYIKWFLEKLGHEGLNNLL |
Transcript ID | AT4G13720.2 |
Gene ID | At.18677 |
Gene Name | NA |
Pfam domain motif | Ham1p_like |
Motif E-value | 7.4e-52 |
Motif start | 29 |
Motif end | 201 |
Protein seq | >AT4G13720.2 MTLLSLSETETQTMAAAAAKAAVVLPRPVTFVTGNAKKLEEVKAIIGNSIPFKSLKLDLPELQGEPEDISKEKARLAALQ VDGPVLVEDTCLCFNALKGLPGPYIKWFLEKLGHEGLNNLLMAYEDKSAYALCAFSFSRGPGAEPLTFLGKTPGKIVPAR GPTDFGWDPVFQPDGYDQTYAEMAKEEKNKISHRYKSLALVKSHFKEAGYVFQTDDGTI* |
CDS seq | >AT4G13720.2 ATGACTTTGCTTTCGCTATCTGAGACTGAGACACAGACAATGGCGGCGGCGGCGGCGAAAGCAGCGGTGGTTTTGCCACG GCCGGTGACGTTTGTGACTGGAAATGCTAAGAAGCTCGAAGAAGTCAAAGCTATCATCGGAAATTCCATTCCTTTCAAGT CTCTCAAACTCGATTTGCCTGAGCTCCAAGGTGAGCCTGAGGATATTTCCAAAGAGAAGGCTCGTTTGGCTGCTCTTCAG GTGGATGGACCAGTGCTTGTGGAAGATACATGTCTCTGTTTCAATGCTTTGAAAGGGCTTCCTGGGCCATACATAAAGTG GTTTCTAGAGAAGCTTGGTCACGAAGGTCTGAACAACTTACTGATGGCCTATGAAGATAAATCAGCTTATGCATTGTGCG CATTCTCTTTCTCGCGTGGTCCAGGTGCTGAACCTCTTACATTTTTGGGGAAAACTCCGGGTAAGATAGTTCCAGCCAGA GGACCAACTGATTTCGGATGGGATCCAGTGTTTCAACCTGATGGATATGACCAAACGTATGCAGAGATGGCAAAGGAAGA AAAGAACAAGATATCACATAGGTACAAGTCTTTAGCATTGGTGAAATCTCACTTTAAGGAGGCTGGCTATGTGTTCCAGA CAGATGATGGTACCATTTAA |