Microexon ID At_4:7968213-7968222:-
Species Arabidopsis thaliana
Coordinates 4:7968213..7968222
Microexon Cluster ID MEP24
Size 10
Phase 1
Pfam Domain Motif Ham1p_like
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) 49,10,32,17
Microexon location in the Microexon-tag 2
Microexon-tag DNA Seq YTKGTKGARGAYACTTGYCTCTGYTTCAATGCMYTCAARGGTCTTCCAGGGCCYTACATMAARTGGTTTCTGSAGAAGATTGGTCATGAAGGTYTGAACAAYTTGYTR
Logo of Microexon-tag DNA Seq NT60 Logo
Alignment of exons MSA
Microexon DNA seq GGCCATACAT
Microexon Amino Acid seq GPYI
Microexon-tag DNA Seq CTTGTGGAAGATACATGTCTCTGTTTCAATGCTTTGAAAGGGCTTCCTGGGCCATACATAAAGTGGTTTCTAGAGAAGCTTGGTCACGAAGGTCTGAACAACTTACTG
Microexon-tag Amino Acid Seq LVEDTCLCFNALKGLPGPYIKWFLEKLGHEGLNNLL
Microexon-tag spanning region7967673-7968378
Microexon-tag prediction score0.9667
Overlapped with the annotated transcript (%) 100
New Transcript ID AT4G13720.1x
Reference Transcript ID AT4G13720.1
Gene ID AT4G13720
Gene Name NA
Transcript ID AT4G13720.1
Protein ID AT4G13720.1
Gene ID AT4G13720
Gene Name NA
Pfam domain motif Ham1p_like
Motif E-value 5.9e-52
Motif start 16
Motif end 188
Protein seq >AT4G13720.1
MAAAAAKAAVVLPRPVTFVTGNAKKLEEVKAIIGNSIPFKSLKLDLPELQGEPEDISKEKARLAALQVDGPVLVEDTCLC
FNALKGLPGPYIKWFLEKLGHEGLNNLLMAYEDKSAYALCAFSFSRGPGAEPLTFLGKTPGKIVPARGPTDFGWDPVFQP
DGYDQTYAEMAKEEKNKISHRYKSLALVKSHFKEAGYVFQTDDGTI*
CDS seq >AT4G13720.1
ATGGCGGCGGCGGCGGCGAAAGCAGCGGTGGTTTTGCCACGGCCGGTGACGTTTGTGACTGGAAATGCTAAGAAGCTCGA
AGAAGTCAAAGCTATCATCGGAAATTCCATTCCTTTCAAGTCTCTCAAACTCGATTTGCCTGAGCTCCAAGGTGAGCCTG
AGGATATTTCCAAAGAGAAGGCTCGTTTGGCTGCTCTTCAGGTGGATGGACCAGTGCTTGTGGAAGATACATGTCTCTGT
TTCAATGCTTTGAAAGGGCTTCCTGGGCCATACATAAAGTGGTTTCTAGAGAAGCTTGGTCACGAAGGTCTGAACAACTT
ACTGATGGCCTATGAAGATAAATCAGCTTATGCATTGTGCGCATTCTCTTTCTCGCGTGGTCCAGGTGCTGAACCTCTTA
CATTTTTGGGGAAAACTCCGGGTAAGATAGTTCCAGCCAGAGGACCAACTGATTTCGGATGGGATCCAGTGTTTCAACCT
GATGGATATGACCAAACGTATGCAGAGATGGCAAAGGAAGAAAAGAACAAGATATCACATAGGTACAAGTCTTTAGCATT
GGTGAAATCTCACTTTAAGGAGGCTGGCTATGTGTTCCAGACAGATGATGGTACCATTTAA
Microexon DNA seq GGCCATACAT
Microexon Amino Acid seq GPYI
Microexon-tag DNA Seq CTTGTGGAAGATACATGTCTCTGTTTCAATGCTTTGAAAGGGCTTCCTGGGCCATACATAAAGTGGTTTCTAGAGAAGCTTGGTCACGAAGGTCTGAACAACTTACTG
Microexon-tag Amino Acid seq LVEDTCLCFNALKGLPGPYIKWFLEKLGHEGLNNLL
Transcript ID AT4G13720.2
Gene ID At.18677
Gene Name NA
Pfam domain motif Ham1p_like
Motif E-value 7.4e-52
Motif start 29
Motif end 201
Protein seq >AT4G13720.2
MTLLSLSETETQTMAAAAAKAAVVLPRPVTFVTGNAKKLEEVKAIIGNSIPFKSLKLDLPELQGEPEDISKEKARLAALQ
VDGPVLVEDTCLCFNALKGLPGPYIKWFLEKLGHEGLNNLLMAYEDKSAYALCAFSFSRGPGAEPLTFLGKTPGKIVPAR
GPTDFGWDPVFQPDGYDQTYAEMAKEEKNKISHRYKSLALVKSHFKEAGYVFQTDDGTI*
CDS seq >AT4G13720.2
ATGACTTTGCTTTCGCTATCTGAGACTGAGACACAGACAATGGCGGCGGCGGCGGCGAAAGCAGCGGTGGTTTTGCCACG
GCCGGTGACGTTTGTGACTGGAAATGCTAAGAAGCTCGAAGAAGTCAAAGCTATCATCGGAAATTCCATTCCTTTCAAGT
CTCTCAAACTCGATTTGCCTGAGCTCCAAGGTGAGCCTGAGGATATTTCCAAAGAGAAGGCTCGTTTGGCTGCTCTTCAG
GTGGATGGACCAGTGCTTGTGGAAGATACATGTCTCTGTTTCAATGCTTTGAAAGGGCTTCCTGGGCCATACATAAAGTG
GTTTCTAGAGAAGCTTGGTCACGAAGGTCTGAACAACTTACTGATGGCCTATGAAGATAAATCAGCTTATGCATTGTGCG
CATTCTCTTTCTCGCGTGGTCCAGGTGCTGAACCTCTTACATTTTTGGGGAAAACTCCGGGTAAGATAGTTCCAGCCAGA
GGACCAACTGATTTCGGATGGGATCCAGTGTTTCAACCTGATGGATATGACCAAACGTATGCAGAGATGGCAAAGGAAGA
AAAGAACAAGATATCACATAGGTACAAGTCTTTAGCATTGGTGAAATCTCACTTTAAGGAGGCTGGCTATGTGTTCCAGA
CAGATGATGGTACCATTTAA