
Microexon ID | Zm_2:4121137-4121146:+ |
Species | Zea mays | Coordinates | 2:4121137..4121146 |
Microexon Cluster ID | MEP23 |
Size | 10 |
Phase | 0 |
Pfam Domain Motif | AAA |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 48,10,50 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | TCVTTTGARYAYCTKCARGGMGATTAYTACATYGCTCCTSYYTTCMTGGATAAAGTTGYRKKYCACATTGTGAAGAACTAYMTTGCTMATCTTCTYAATRYYAAARTT |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | GATAAAGTTG |
Microexon Amino Acid seq | DKVA |
Microexon-tag DNA Seq | ACGTTCGAGTACCTGCAGGGGGATTACTACATCGCACCTGCCTTCCTCGATAAAGTTGCATGCCACATTGTAAAGAACTACATTGCGCATCTTCTTAATAATATCAAG |
Microexon-tag Amino Acid Seq | TFEYLQGDYYIAPAFLDKVACHIVKNYIAHLLNNIK |
Microexon-tag spanning region | 4120981-4121963 |
Microexon-tag prediction score | 0.9367 |
Overlapped with the annotated transcript (%) | 72.48 |
New Transcript ID | Zm00001d001995_T002x |
Reference Transcript ID | Zm00001d001995_T002 |
Gene ID | Zm00001d001995 |
Gene Name | NA |
Transcript ID | Zm00001d001995_T001 |
Protein ID | Zm00001d001995_P001 |
Gene ID | Zm00001d001995 |
Gene Name | NA |
Pfam domain motif | AAA |
Motif E-value | 1.7e-12 |
Motif start | 147 |
Motif end | 289 |
Protein seq | >Zm00001d001995_P001 MATTSVAASSPHPHLSRPRRRNSSATSRTSIRGCLLPIRCSSASSSQPPATGGEEGESGRRRLSKQSSWEDRDVEGDDYL YRLGKEADNLNITVGARSGIVDELFVGNFLGKDSDIVFDYRQKATRTFEYLQGDYYIAPAFLDKVGIWGGKGQGKTFQTE LIFRAMGVEPVIMSAGELESEKAGEPGRLIRDRYRTASQVIQNQGKMSCLMINDLDAGVGRFGNTQMTVNNQIAVGTLMN LADNPTRVSIGQKWRESDVTHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWQPNREDIISIVHGMYIKDGLSVEEVSRIVD AFPNQALDFYGALRSRTYDQAILEWVEEIGGHEQLNEKLLKRKKGEELPTFIPPKPTLEALIESGYSLVKEQELIMSSKL SKEYMKNLE* |
CDS seq | >Zm00001d001995_T001 ATGGCCACCACCTCCGTCGCCGCCTCCTCTCCCCATCCCCATCTGTCCCGCCCCCGCCGGCGGAACTCCAGCGCCACCTC CAGAACCTCGATCCGGGGCTGCCTCCTGCCCATCCGATGCTCGTCCGCCTCGTCGTCGCAACCGCCGGCAACCGGCGGCG AGGAGGGAGAGTCGGGGCGCCGGCGGCTGTCGAAGCAGTCGTCGTGGGAGGACAGAGATGTGGAGGGGGACGACTACCTC TACCGCCTCGGGAAGGAGGCTGACAACTTGAACATCACCGTTGGCGCACGGTCCGGCATCGTCGACGAACTCTTCGTCGG AAACTTCCTCGGGAAAGACTCGGATATCGTGTTCGACTACCGGCAGAAGGCAACTAGAACGTTCGAGTACCTGCAGGGGG ATTACTACATCGCACCTGCCTTCCTCGATAAAGTTGGGATCTGGGGCGGAAAAGGCCAAGGGAAAACATTCCAGACTGAA CTTATATTTAGAGCAATGGGTGTGGAGCCAGTAATTATGTCTGCAGGCGAACTAGAATCTGAAAAAGCAGGTGAACCCGG GAGGCTAATACGTGATAGATACAGAACTGCCTCCCAAGTAATCCAAAACCAAGGGAAAATGAGTTGCTTGATGATCAACG ATCTAGATGCTGGTGTTGGAAGATTTGGAAACACGCAGATGACGGTCAATAATCAAATAGCTGTTGGAACTTTGATGAAT TTGGCAGATAATCCTACTAGGGTGAGCATCGGCCAGAAATGGAGAGAATCTGATGTTACACACAGGGTGCCAATAATAGT TACTGGAAATGATTTTTCAACTCTATATGCACCCTTAATTCGTGATGGGAGAATGGAAAAATTCTACTGGCAGCCCAACC GTGAAGATATAATTAGTATTGTTCATGGCATGTATATAAAGGATGGATTATCTGTTGAAGAAGTATCAAGAATTGTAGAC GCATTTCCAAACCAAGCTCTGGACTTCTATGGAGCTTTGAGATCCAGGACATATGATCAGGCTATCTTGGAGTGGGTCGA AGAAATCGGTGGGCATGAACAGCTAAATGAGAAGCTTCTTAAGCGAAAGAAAGGCGAGGAGCTTCCAACGTTTATACCCC CAAAGCCAACACTGGAAGCATTGATTGAGTCAGGGTACTCGCTGGTGAAGGAGCAGGAACTAATAATGAGCTCCAAGCTT TCAAAAGAGTATATGAAGAACTTAGAATAG |
Microexon DNA seq | GATAAAGTTG |
Microexon Amino Acid seq | DKVG |
Microexon-tag DNA Seq | ACGTTCGAGTACCTGCAGGGGGATTACTACATCGCACCTGCCTTCCTCGATAAAGTTGGGATCTGGGGCGGAAAAGGCCAAGGGAAAACATTCCAGACTGAACTTATA |
Microexon-tag Amino Acid seq | TFEYLQGDYYIAPAFLDKVGIWGGKGQGKTFQTELI |
Transcript ID | Zm00001d001995_T001 |
Gene ID | Zm.8697 |
Gene Name | NA |
Pfam domain motif | AAA |
Motif E-value | 1.7e-12 |
Motif start | 147 |
Motif end | 289 |
Protein seq | >Zm00001d001995_T001 MATTSVAASSPHPHLSRPRRRNSSATSRTSIRGCLLPIRCSSASSSQPPATGGEEGESGRRRLSKQSSWEDRDVEGDDYL YRLGKEADNLNITVGARSGIVDELFVGNFLGKDSDIVFDYRQKATRTFEYLQGDYYIAPAFLDKVGIWGGKGQGKTFQTE LIFRAMGVEPVIMSAGELESEKAGEPGRLIRDRYRTASQVIQNQGKMSCLMINDLDAGVGRFGNTQMTVNNQIAVGTLMN LADNPTRVSIGQKWRESDVTHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWQPNREDIISIVHGMYIKDGLSVEEVSRIVD AFPNQALDFYGALRSRTYDQAILEWVEEIGGHEQLNEKLLKRKKGEELPTFIPPKPTLEALIESGYSLVKEQELIMSSKL SKEYMKNLE* |
CDS seq | >Zm00001d001995_T001 ATGGCCACCACCTCCGTCGCCGCCTCCTCTCCCCATCCCCATCTGTCCCGCCCCCGCCGGCGGAACTCCAGCGCCACCTC CAGAACCTCGATCCGGGGCTGCCTCCTGCCCATCCGATGCTCGTCCGCCTCGTCGTCGCAACCGCCGGCAACCGGCGGCG AGGAGGGAGAGTCGGGGCGCCGGCGGCTGTCGAAGCAGTCGTCGTGGGAGGACAGAGATGTGGAGGGGGACGACTACCTC TACCGCCTCGGGAAGGAGGCTGACAACTTGAACATCACCGTTGGCGCACGGTCCGGCATCGTCGACGAACTCTTCGTCGG AAACTTCCTCGGGAAAGACTCGGATATCGTGTTCGACTACCGGCAGAAGGCAACTAGAACGTTCGAGTACCTGCAGGGGG ATTACTACATCGCACCTGCCTTCCTCGATAAAGTTGGGATCTGGGGCGGAAAAGGCCAAGGGAAAACATTCCAGACTGAA CTTATATTTAGAGCAATGGGTGTGGAGCCAGTAATTATGTCTGCAGGCGAACTAGAATCTGAAAAAGCAGGTGAACCCGG GAGGCTAATACGTGATAGATACAGAACTGCCTCCCAAGTAATCCAAAACCAAGGGAAAATGAGTTGCTTGATGATCAACG ATCTAGATGCTGGTGTTGGAAGATTTGGAAACACGCAGATGACGGTCAATAATCAAATAGCTGTTGGAACTTTGATGAAT TTGGCAGATAATCCTACTAGGGTGAGCATCGGCCAGAAATGGAGAGAATCTGATGTTACACACAGGGTGCCAATAATAGT TACTGGAAATGATTTTTCAACTCTATATGCACCCTTAATTCGTGATGGGAGAATGGAAAAATTCTACTGGCAGCCCAACC GTGAAGATATAATTAGTATTGTTCATGGCATGTATATAAAGGATGGATTATCTGTTGAAGAAGTATCAAGAATTGTAGAC GCATTTCCAAACCAAGCTCTGGACTTCTATGGAGCTTTGAGATCCAGGACATATGATCAGGCTATCTTGGAGTGGGTCGA AGAAATCGGTGGGCATGAACAGCTAAATGAGAAGCTTCTTAAGCGAAAGAAAGGCGAGGAGCTTCCAACGTTTATACCCC CAAAGCCAACACTGGAAGCATTGATTGAGTCAGGGTACTCGCTGGTGAAGGAGCAGGAACTAATAATGAGCTCCAAGCTT TCAAAAGAGTATATGAAGAACTTAGAATAG |