
Microexon ID | Vv_9:18216248-18216257:- |
Species | Vistis vinifera | Coordinates | 9:18216248..18216257 |
Microexon Cluster ID | MEP23 |
Size | 10 |
Phase | 0 |
Pfam Domain Motif | AAA |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 48,10,50 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | TCVTTTGARYAYCTKCARGGMGATTAYTACATYGCTCCTSYYTTCMTGGATAAAGTTGYRKKYCACATTGTGAAGAACTAYMTTGCTMATCTTCTYAATRYYAAARTT |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | GATAAAGTTG |
Microexon Amino Acid seq | DKVV |
Microexon-tag DNA Seq | TCATTTGAGTATCTTCAAGGGGATTACTACATCGCTCCTGTCTTCATGGATAAAGTTGTGTGCCACATTGTGAAGAACTACATTGCTCATCTTCTCAACACCAATGTA |
Microexon-tag Amino Acid Seq | SFEYLQGDYYIAPVFMDKVVCHIVKNYIAHLLNTNV |
Microexon-tag spanning region | 18213970-18217889 |
Microexon-tag prediction score | 0.9802 |
Overlapped with the annotated transcript (%) | 87.5 |
New Transcript ID | VIT_09s0018g01270.t01x |
Reference Transcript ID | VIT_09s0018g01270.t01 |
Gene ID | VIT_09s0018g01270 |
Gene Name | NA |
Vv_9:18216248-18216257:- does not have available information here.
Microexon DNA seq | GATAAAGTTG |
Microexon Amino Acid seq | DKVV |
Microexon-tag DNA Seq | TCATTTGAGTATCTTCAAGGGGATTACTACATCGCTCCTGTCTTCATGGATAAAGTTGTGTGCCACATTGTGAAGAACTACATTGCTCATCTTCTCAACACCAATGTA |
Microexon-tag Amino Acid seq | SFEYLQGDYYIAPVFMDKVVCHIVKNYIAHLLNTNV |
Transcript ID | Vv.33067.1 |
Gene ID | Vv.33067 |
Gene Name | NA |
Pfam domain motif | Torsin |
Motif E-value | 0.0057 |
Motif start | 152 |
Motif end | 198 |
Protein seq | >Vv.33067.1 MALCNFHNTLLSSSSSSSYSSSFSPLSPFLKPPNALRFFTKFSTSPFSLRALNSSNNDNPTGESAGGEAGQRRISEQSSW EAKDSEGRDYLYRLGKEADNMNIAVGARAGIIDDLFVGNFLGRDSDIVFDYRQKVTRSFEYLQGDYYIAPVFMDKVVCHI VKNYIAHLLNTNVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMS CLMINDIDAGIGRFGNTQVTVNNQIAVGTLMNLSDNPTRVSIGQDWRETDITNRVPIIVTGNDFSTIYAPLIRDGRMDKF YWQPTHEDIINIVDRMYEKDGISRDAVVRIVDTFPNQALDFYGALRSRTYDRSISKWVDDIGGVENLGNKLLRRRKDEKL PVFVPPKQTIDALLESGYSLIKEQQLIMETKLSKEYMKNIDD* |
CDS seq | >Vv.33067.1 ATGGCGCTCTGCAACTTCCACAACACGCTCCTCTCCTCCTCCTCCTCCTCCTCCTATTCTTCCTCTTTTTCTCCTCTGTC GCCATTTCTTAAACCTCCAAATGCTCTTAGATTCTTCACCAAATTCTCTACCTCTCCTTTCTCTCTGCGCGCCCTCAACT CGTCTAACAACGACAATCCCACCGGGGAAAGCGCCGGCGGCGAAGCTGGCCAGAGAAGGATTTCCGAGCAATCCTCCTGG GAGGCCAAGGACTCCGAGGGAAGGGACTATCTGTACAGGCTGGGGAAAGAGGCTGATAACATGAATATCGCGGTTGGGGC TAGGGCTGGCATCATTGATGATCTTTTTGTTGGGAATTTTCTCGGCCGAGACTCGGATATTGTGTTTGATTACCGACAAA AAGTGACTCGCTCATTTGAGTATCTTCAAGGGGATTACTACATCGCTCCTGTCTTCATGGATAAAGTTGTGTGCCACATT GTGAAGAACTACATTGCTCATCTTCTCAACACCAATGTACCTCTAATACTAGGCATTTGGGGAGGAAAAGGTCAGGGAAA ATCATTTCAAACAGAACTTATTTTCCAGGCCATGGGAATAGAACCTGTCATTATGTCTGCTGGGGAACTGGAATCAGAAA GAGCCGGAGAACCAGGGAAATTGATACGGGAACGGTATAGAACAGCTTCTCAAGTGGTCCAGAACCAAGGGAAGATGAGC TGTTTAATGATCAATGACATTGATGCTGGCATTGGGAGATTTGGAAACACTCAAGTGACAGTCAACAATCAAATTGCTGT TGGGACTCTGATGAATTTGTCAGATAATCCTACAAGAGTCAGTATTGGACAAGATTGGCGAGAAACTGACATTACGAATA GAGTTCCTATAATTGTTACAGGAAATGATTTTTCAACAATCTATGCTCCCTTGATTCGTGATGGAAGGATGGACAAGTTC TACTGGCAGCCTACCCATGAAGATATCATAAATATTGTCGATAGGATGTATGAGAAAGATGGCATATCTAGGGATGCAGT TGTAAGAATTGTGGACACATTTCCTAATCAAGCTTTGGATTTTTATGGAGCTCTTAGGTCCCGAACATATGATCGATCAA TCTCCAAGTGGGTGGATGATATTGGAGGTGTTGAAAATCTCGGAAACAAACTCCTCAGGAGAAGGAAGGATGAAAAACTT CCTGTGTTTGTTCCACCAAAGCAAACTATTGATGCTTTACTTGAGTCTGGTTACTCTCTCATCAAAGAACAGCAGTTGAT AATGGAGACCAAACTTTCAAAAGAATACATGAAGAACATTGATGACTAG |