Microexon ID Sb_6:58806494-58806503:-
Species Sorghum   Bicolor
Coordinates 6:58806494..58806503
Microexon Cluster ID MEP23
Size 10
Phase 0
Pfam Domain Motif AAA
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) 48,10,50
Microexon location in the Microexon-tag 2
Microexon-tag DNA Seq TCVTTTGARYAYCTKCARGGMGATTAYTACATYGCTCCTSYYTTCMTGGATAAAGTTGYRKKYCACATTGTGAAGAACTAYMTTGCTMATCTTCTYAATRYYAAARTT
Logo of Microexon-tag DNA Seq NT60 Logo
Alignment of exons MSA
Microexon DNA seq GATAAAGTTG
Microexon Amino Acid seq DKVA
Microexon-tag DNA Seq ACATTCGAGTACCTGCAGGGGGATTACTATATCGCACCTGCCTTCCTCGATAAAGTTGCATGCCACATTGTAAAGAACTACATTGGACATCTTCTAAATAATATCAAG
Microexon-tag Amino Acid Seq TFEYLQGDYYIAPAFLDKVACHIVKNYIGHLLNNIK
Microexon-tag spanning region58805605-58806639
Microexon-tag prediction score0.9242
Overlapped with the annotated transcript (%) 100
New Transcript ID OQU82488x
Reference Transcript ID OQU82488
Gene ID SORBI_3006G248700
Gene Name NA
Transcript ID OQU82488
Protein ID
Gene ID SORBI_3006G248700
Gene Name
Pfam domain motif Torsin
Motif E-value 0.25
Motif start 150
Motif end 190
Protein seq >OQU82488
MATTSVAARSPHPHLSHPRRQNPSTTSTSRASIRGRLPPIRCSSASSPPPPATGGEEGESGSRRLSKQSSWESKDAEGDD
YLYRLGKEADNLNVTVGARAGIVDDLFVGNFLGKDSDIVFDYRQKATRTFEYLQGDYYIAPAFLDKVACHIVKNYIGHLL
NNIKIPLILGVWGGKGQGKTFQTELIFKAMGVEPVIMSAGELESEKAGEPGRLIRDRYRTASQVIQNQGKLSCLMINDLD
AGVGRFGNTQMTVNNQIAVGTLMNLADNPNRVSIGQKWRESDVTHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWQPTRED
IISIVHGMYRKDGLSAEEVARVVDTFPNQALDFYGALRSRTYDRAILEWVEEIGGHEQLRAKLLKRKKGEELPTFIAPKP
SLEALIESGYSLVKEQELIMNSKLSKEYMKNLE*
CDS seq >OQU82488
ATGGCCACCACCTCCGTCGCCGCTCGCTCCCCCCACCCCCACCTCTCCCACCCCCGCCGCCAGAACCCCAGCACCACCTC
CACCTCCAGAGCCTCGATTCGGGGCCGGCTTCCGCCCATCCGGTGCTCGTCCGCCTCCTCGCCGCCGCCGCCGGCCACCG
GCGGCGAGGAAGGGGAGTCGGGGTCCCGGCGGCTGTCAAAGCAGTCGTCGTGGGAGTCGAAGGACGCGGAGGGGGACGAC
TACCTCTACCGCCTCGGGAAGGAGGCGGACAACCTGAACGTCACCGTCGGCGCACGGGCCGGCATCGTCGACGACCTCTT
CGTTGGAAACTTCCTCGGGAAAGACTCTGATATTGTGTTCGATTACCGGCAGAAGGCAACAAGAACATTCGAGTACCTGC
AGGGGGATTACTATATCGCACCTGCCTTCCTCGATAAAGTTGCATGCCACATTGTAAAGAACTACATTGGACATCTTCTA
AATAATATCAAGATTCCCTTAATACTTGGGGTTTGGGGTGGAAAAGGTCAAGGGAAAACATTTCAGACTGAACTTATATT
TAAAGCAATGGGTGTTGAACCTGTTATTATGTCTGCTGGGGAACTAGAATCAGAAAAAGCAGGTGAACCAGGGAGGCTAA
TACGTGATCGATACAGAACTGCCTCCCAAGTAATCCAAAACCAAGGGAAACTGAGTTGCTTGATGATCAACGATCTAGAT
GCTGGTGTTGGAAGATTTGGAAACACGCAGATGACAGTCAATAATCAAATAGCTGTCGGAACTTTGATGAACTTGGCAGA
TAATCCTAACAGGGTGAGCATCGGCCAGAAATGGAGAGAATCTGATGTTACACACAGAGTGCCAATAATAGTTACTGGAA
ATGATTTTTCAACTCTATATGCACCCTTAATTCGTGATGGGAGAATGGAAAAATTCTACTGGCAGCCCACCCGTGAAGAT
ATAATTAGTATTGTTCATGGCATGTATAGAAAGGATGGATTATCTGCTGAAGAAGTAGCAAGAGTTGTAGACACATTTCC
AAACCAAGCTCTGGACTTCTATGGAGCTTTGAGATCCAGGACATATGATCGGGCTATCTTGGAGTGGGTCGAAGAAATTG
GTGGACATGAACAGCTAAGGGCAAAGCTTCTTAAGCGAAAGAAAGGAGAGGAGCTTCCAACATTTATAGCCCCAAAGCCA
TCACTGGAGGCATTGATTGAGTCAGGGTACTCGCTGGTGAAGGAGCAAGAACTAATAATGAACTCAAAACTATCAAAAGA
GTATATGAAGAACTTAGAATAG
Sb_6:58806494-58806503:- does not have available information here.