
Microexon ID | Sb_6:58806494-58806503:- |
Species | Sorghum Bicolor | Coordinates | 6:58806494..58806503 |
Microexon Cluster ID | MEP23 |
Size | 10 |
Phase | 0 |
Pfam Domain Motif | AAA |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 48,10,50 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | TCVTTTGARYAYCTKCARGGMGATTAYTACATYGCTCCTSYYTTCMTGGATAAAGTTGYRKKYCACATTGTGAAGAACTAYMTTGCTMATCTTCTYAATRYYAAARTT |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | GATAAAGTTG |
Microexon Amino Acid seq | DKVA |
Microexon-tag DNA Seq | ACATTCGAGTACCTGCAGGGGGATTACTATATCGCACCTGCCTTCCTCGATAAAGTTGCATGCCACATTGTAAAGAACTACATTGGACATCTTCTAAATAATATCAAG |
Microexon-tag Amino Acid Seq | TFEYLQGDYYIAPAFLDKVACHIVKNYIGHLLNNIK |
Microexon-tag spanning region | 58805605-58806639 |
Microexon-tag prediction score | 0.9242 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | OQU82488x |
Reference Transcript ID | OQU82488 |
Gene ID | SORBI_3006G248700 |
Gene Name | NA |
Transcript ID | OQU82488 |
Protein ID | |
Gene ID | SORBI_3006G248700 |
Gene Name | |
Pfam domain motif | Torsin |
Motif E-value | 0.25 |
Motif start | 150 |
Motif end | 190 |
Protein seq | >OQU82488 MATTSVAARSPHPHLSHPRRQNPSTTSTSRASIRGRLPPIRCSSASSPPPPATGGEEGESGSRRLSKQSSWESKDAEGDD YLYRLGKEADNLNVTVGARAGIVDDLFVGNFLGKDSDIVFDYRQKATRTFEYLQGDYYIAPAFLDKVACHIVKNYIGHLL NNIKIPLILGVWGGKGQGKTFQTELIFKAMGVEPVIMSAGELESEKAGEPGRLIRDRYRTASQVIQNQGKLSCLMINDLD AGVGRFGNTQMTVNNQIAVGTLMNLADNPNRVSIGQKWRESDVTHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWQPTRED IISIVHGMYRKDGLSAEEVARVVDTFPNQALDFYGALRSRTYDRAILEWVEEIGGHEQLRAKLLKRKKGEELPTFIAPKP SLEALIESGYSLVKEQELIMNSKLSKEYMKNLE* |
CDS seq | >OQU82488 ATGGCCACCACCTCCGTCGCCGCTCGCTCCCCCCACCCCCACCTCTCCCACCCCCGCCGCCAGAACCCCAGCACCACCTC CACCTCCAGAGCCTCGATTCGGGGCCGGCTTCCGCCCATCCGGTGCTCGTCCGCCTCCTCGCCGCCGCCGCCGGCCACCG GCGGCGAGGAAGGGGAGTCGGGGTCCCGGCGGCTGTCAAAGCAGTCGTCGTGGGAGTCGAAGGACGCGGAGGGGGACGAC TACCTCTACCGCCTCGGGAAGGAGGCGGACAACCTGAACGTCACCGTCGGCGCACGGGCCGGCATCGTCGACGACCTCTT CGTTGGAAACTTCCTCGGGAAAGACTCTGATATTGTGTTCGATTACCGGCAGAAGGCAACAAGAACATTCGAGTACCTGC AGGGGGATTACTATATCGCACCTGCCTTCCTCGATAAAGTTGCATGCCACATTGTAAAGAACTACATTGGACATCTTCTA AATAATATCAAGATTCCCTTAATACTTGGGGTTTGGGGTGGAAAAGGTCAAGGGAAAACATTTCAGACTGAACTTATATT TAAAGCAATGGGTGTTGAACCTGTTATTATGTCTGCTGGGGAACTAGAATCAGAAAAAGCAGGTGAACCAGGGAGGCTAA TACGTGATCGATACAGAACTGCCTCCCAAGTAATCCAAAACCAAGGGAAACTGAGTTGCTTGATGATCAACGATCTAGAT GCTGGTGTTGGAAGATTTGGAAACACGCAGATGACAGTCAATAATCAAATAGCTGTCGGAACTTTGATGAACTTGGCAGA TAATCCTAACAGGGTGAGCATCGGCCAGAAATGGAGAGAATCTGATGTTACACACAGAGTGCCAATAATAGTTACTGGAA ATGATTTTTCAACTCTATATGCACCCTTAATTCGTGATGGGAGAATGGAAAAATTCTACTGGCAGCCCACCCGTGAAGAT ATAATTAGTATTGTTCATGGCATGTATAGAAAGGATGGATTATCTGCTGAAGAAGTAGCAAGAGTTGTAGACACATTTCC AAACCAAGCTCTGGACTTCTATGGAGCTTTGAGATCCAGGACATATGATCGGGCTATCTTGGAGTGGGTCGAAGAAATTG GTGGACATGAACAGCTAAGGGCAAAGCTTCTTAAGCGAAAGAAAGGAGAGGAGCTTCCAACATTTATAGCCCCAAAGCCA TCACTGGAGGCATTGATTGAGTCAGGGTACTCGCTGGTGAAGGAGCAAGAACTAATAATGAACTCAAAACTATCAAAAGA GTATATGAAGAACTTAGAATAG |
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