
Microexon ID | Zm_3:146850045-146850053:- |
Species | Zea mays | Coordinates | 3:146850045..146850053 |
Microexon Cluster ID | MEP22 |
Size | 9 |
Phase | 1 |
Pfam Domain Motif | Glyco_hydro_32N |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 49,9,50 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | YSKYAMMGRACYGSYTWYCAYTTYCARCCYSMCAARAAYTGGATGAAYGATCCYAAYGGTCCAATGTWYTACAAGGGATKGTACCAYYTSTTCTAYCARTACAAYCCV |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | ATCCAAATG |
Microexon Amino Acid seq | DPNG |
Microexon-tag DNA Seq | AAGTACAGGACCGCGTACCACTTCCAGCCTCCCAAGAACTGGATCAACGATCCAAATGGACCAATGTACTACAATGGTATCTACCACCAGTTCTACCAGTACAACCCA |
Microexon-tag Amino Acid Seq | KYRTAYHFQPPKNWINDPNGPMYYNGIYHQFYQYNP |
Microexon-tag spanning region | 146849909-146850796 |
Microexon-tag prediction score | 0.9714 |
Overlapped with the annotated transcript (%) | 91.67 |
New Transcript ID | Zm00001d041991_T001x |
Reference Transcript ID | Zm00001d041991_T001 |
Gene ID | Zm00001d041991 |
Gene Name | NA |
Zm_3:146850045-146850053:- does not have available information here.
Microexon DNA seq | ATCCAAATG |
Microexon Amino Acid seq | DPNG |
Microexon-tag DNA Seq | AAGTACAGGACCGCGTACCACTTCCAGCCTCCCAAGAACTGGATCAACGATCCAAATGGACCAATGTACTACAATGGTATCTACCACCAGTTCTACCAGTACAACCCA |
Microexon-tag Amino Acid seq | KYRTAYHFQPPKNWINDPNGPMYYNGIYHQFYQYNP |
Transcript ID | Zm.15194.1 |
Gene ID | Zm.15194 |
Gene Name | NA |
Pfam domain motif | Glyco_hydro_32N |
Motif E-value | 1.9e-99 |
Motif start | 118 |
Motif end | 435 |
Protein seq | >Zm.15194.1 MQSEQPQATAGQQPIGSHCLPLNILRPSSQHFVELTKSPHPILHPHLCLCSSMAMAMARPCAFLLFFLVLFSYDGSGPGS SRRTRRSGVAQATQRVFLYPQAPKVSSIVSSKYRTAYHFQPPKNWINDPNGPMYYNGIYHQFYQYNPNGSLWGNIVWAHS VSTDLVNWIRLAPAIERTTPSDINGCWTGSATILKSGRPAIIYTGADTEKRQVQNVAFPKNLSDPYLREWVKPHDNPVIQ PVGRGLNPGQFRDPTTGWIGPDGLWRIAVGAEVDGHSAALLYESEDFVRWDRVDHPLYSSNASAMWECPDFFAAMPGENS GLDMSAAVPDGAKHVLKMSLDGSDKYMVGVYDLKGDAFVPDTVIEDRRLWSRIDYGNYYASKSFFDSKKGRRVIWGWTNE TDSSSDDVAKGWAGIHAIPRTIWLDKDSKQLLQWPVEEIESLRGKQVRHQGLELRKGDLFEIKEIDTLQADVEIDFELTS IGSADPFDPSWLLDIEKQCREAGASAHGPFGLVVLASESMEEHTSVHFRVYYRSQEKHMVLMCADLRKSSLRPELYTPAY GGFFELDLEKEKTVVSLRTLIDRSAVESFGGGGRVCIMARVYPAALVDDGGTRMYAFNNGTSTVRVPRLEAWSMRRAQVN KG* |
CDS seq | >Zm.15194.1 ATGCAAAGTGAGCAGCCACAGGCCACAGCAGGTCAGCAGCCAATTGGAAGTCACTGTCTTCCTCTGAATATTCTGAGACC CTCCTCTCAACACTTTGTCGAGTTAACAAAGTCACCTCATCCAATCTTGCATCCCCATCTCTGTCTTTGCTCCTCCATGG CCATGGCCATGGCCCGACCTTGTGCTTTCCTTCTCTTCTTCCTAGTTCTTTTCTCCTACGACGGATCCGGTCCTGGGAGC AGCAGGAGGACTAGGAGGAGTGGCGTCGCGCAGGCCACGCAGAGAGTCTTCCTGTATCCACAGGCTCCCAAGGTCTCCTC CATCGTGAGCAGCAAGTACAGGACCGCGTACCACTTCCAGCCTCCCAAGAACTGGATCAACGATCCAAATGGACCAATGT ACTACAATGGTATCTACCACCAGTTCTACCAGTACAACCCAAACGGCTCGCTCTGGGGCAACATAGTCTGGGCGCACTCG GTCTCCACAGATCTCGTGAACTGGATCCGGCTCGCGCCGGCGATAGAGCGGACGACTCCGAGCGACATCAATGGCTGCTG GACAGGTTCAGCCACCATCCTAAAGAGCGGCCGGCCTGCCATCATATACACCGGCGCCGACACCGAGAAGCGTCAGGTCC AGAACGTGGCGTTCCCCAAGAACCTGTCCGATCCGTACCTGCGGGAGTGGGTGAAGCCACACGACAACCCGGTGATCCAG CCGGTCGGACGAGGGCTGAACCCAGGCCAGTTCAGAGACCCGACGACCGGCTGGATCGGCCCGGACGGGCTGTGGAGGAT AGCCGTCGGGGCCGAGGTCGACGGCCACAGCGCGGCGCTTCTGTACGAGAGCGAGGACTTCGTGCGCTGGGACAGAGTGG ACCACCCGCTCTACTCCTCCAACGCCTCCGCCATGTGGGAGTGCCCGGACTTCTTCGCGGCGATGCCGGGCGAGAACTCC GGGCTGGACATGTCGGCTGCGGTCCCGGATGGCGCCAAGCACGTCCTCAAGATGAGCCTTGACGGCTCTGACAAGTACAT GGTCGGCGTCTATGATCTGAAAGGTGACGCCTTTGTGCCGGATACCGTGATCGAGGACCGGAGGCTGTGGTCAAGGATTG ACTACGGCAACTACTACGCTTCCAAGTCGTTCTTCGACTCGAAGAAAGGGAGGAGGGTCATATGGGGCTGGACGAATGAG ACGGACAGTTCGTCAGACGACGTCGCCAAAGGATGGGCTGGAATCCATGCAATTCCCAGGACTATATGGTTGGATAAAGA CAGCAAGCAGCTGCTGCAATGGCCGGTCGAAGAGATCGAGTCGCTCCGAGGAAAACAAGTCAGACACCAAGGCCTGGAGC TCAGGAAGGGGGATCTGTTTGAGATTAAGGAAATTGACACTCTGCAGGCAGATGTGGAGATAGATTTCGAGCTCACATCC ATAGGCAGTGCCGACCCTTTTGACCCTTCCTGGCTCTTGGACATCGAGAAGCAGTGCCGGGAAGCGGGCGCGTCGGCTCA TGGCCCGTTCGGGCTCGTGGTTCTTGCTTCTGAGAGCATGGAAGAGCACACCTCCGTGCACTTCAGAGTGTACTACAGAT CACAGGAGAAGCACATGGTTCTTATGTGCGCCGATCTGAGGAAATCGTCCTTGAGACCGGAGCTGTACACGCCAGCCTAC GGAGGCTTCTTTGAGCTGGACCTGGAGAAGGAAAAGACGGTGGTATCTCTGAGAACTTTGATCGATCGCTCTGCGGTGGA GAGCTTCGGTGGAGGCGGCAGGGTGTGCATCATGGCCAGGGTCTATCCGGCGGCGCTCGTCGACGACGGCGGCACTCGCA TGTACGCGTTCAACAATGGCACTAGCACCGTCAGAGTGCCCCGGCTAGAAGCGTGGAGCATGAGGAGGGCACAGGTTAAC AAGGGATGA |