
Microexon ID | Zm_2:24149514-24149522:- |
Species | Zea mays | Coordinates | 2:24149514..24149522 |
Microexon Cluster ID | MEP22 |
Size | 9 |
Phase | 1 |
Pfam Domain Motif | Glyco_hydro_32N |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 49,9,50 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | YSKYAMMGRACYGSYTWYCAYTTYCARCCYSMCAARAAYTGGATGAAYGATCCYAAYGGTCCAATGTWYTACAAGGGATKGTACCAYYTSTTCTAYCARTACAAYCCV |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | ATCCGAACG |
Microexon Amino Acid seq | DPNG |
Microexon-tag DNA Seq | TGGCAGCGCACGGCGTTCCACTTCCAGCCCCCCAAGAACTGGATGAACGATCCGAACGGTCCGCTGTATCACAAGGGCTGGTACCACCTCTTCTACCAGTGGAACCCG |
Microexon-tag Amino Acid Seq | WQRTAFHFQPPKNWMNDPNGPLYHKGWYHLFYQWNP |
Microexon-tag spanning region | 24149266-24149744 |
Microexon-tag prediction score | 0.9696 |
Overlapped with the annotated transcript (%) | 91.67 |
New Transcript ID | Zm00001d002830_T001x |
Reference Transcript ID | Zm00001d002830_T001 |
Gene ID | Zm00001d002830 |
Gene Name | invertase1 |
Zm_2:24149514-24149522:- does not have available information here.
Microexon DNA seq | ATCCGAACG |
Microexon Amino Acid seq | DPNG |
Microexon-tag DNA Seq | TGGCAGCGCACGGCGTTCCACTTCCAGCCCCCCAAGAACTGGATGAACGATCCGAACGGTCCGCTGTATCACAAGGGCTGGTACCACCTCTTCTACCAGTGGAACCCG |
Microexon-tag Amino Acid seq | WQRTAFHFQPPKNWMNDPNGPLYHKGWYHLFYQWNP |
Transcript ID | Zm.9390.2 |
Gene ID | Zm.9390 |
Gene Name | invertase1 |
Pfam domain motif | Glyco_hydro_32N |
Motif E-value | 1.7e-105 |
Motif start | 129 |
Motif end | 459 |
Protein seq | >Zm.9390.2 MIPAVADPTTLDGGGARRPLLPETDPRGRAAAGAGQKRPPATPTVLPAVVSAVLLLVVVAVTVLASQHVDGQGGGVPAGE DAVVVEVAASRGVAEGVSEKSTAQLLGAGALQDFSWTNAMLAWQRTAFHFQPPKNWMNDPNGPLYHKGWYHLFYQWNPDS AVWGNITWGHAVSRDLLHWLHLPLAMVPDHPYDANGVWSGSATRLPDGRIVMLYTGSTAESSAQVQNLAEPADASDPLLR EWVKSDANPVLVPPPGIGPTDFRDPTTAWRTPGNDTPAWRVAIGSKDRDHAGLALVYRTEDFVRYDPAPALMHAVPGTGM WECVDFYPVAAGSGAAADSGDGLETSAAPGPGVKHVLKASLDDDKHDYYAIGTYDPATDTWTPDSAEDDVGIGLRYDYGK YYASKTFYDPVLRRRVLWGWVGETDSERADILKGWASVQSIPRTVLLDTKTGSNLLQWPVVEVENLRMSGKSFDGVALDR GSVVPLDVGKATQLDIEAVFEVDASDAAAVTEADVTFNCSTSAGAAGRGLLGPFGLLVLADDDLSEQTAVYFYLLKGTDG SLQTFFCQDELRASKANDLVKRVYGSLVPVLDGENLSVRILVDHSIVESFAQGGRTCITSRVYPTRAIYDSARVFLFNNA THAHVKAKSVKIWQLNSAYIRPYPATTTSL* |
CDS seq | >Zm.9390.2 ATGATCCCTGCCGTTGCTGATCCGACGACGCTGGACGGCGGGGGCGCGCGCAGGCCGTTGCTCCCGGAGACGGACCCTCG GGGGCGGGCTGCCGCCGGCGCCGGGCAGAAGCGGCCGCCGGCGACGCCGACCGTTCTCCCCGCCGTCGTCTCCGCCGTGC TCCTGCTCGTCGTCGTGGCGGTCACAGTCCTCGCGTCGCAGCACGTCGACGGGCAGGGTGGGGGCGTTCCCGCGGGCGAA GATGCCGTCGTCGTCGAGGTGGCCGCCTCCCGTGGCGTGGCTGAGGGCGTGTCGGAGAAGTCAACGGCCCAGCTCCTCGG CGCCGGCGCGCTCCAGGACTTCTCCTGGACCAACGCGATGCTGGCGTGGCAGCGCACGGCGTTCCACTTCCAGCCCCCCA AGAACTGGATGAACGATCCGAACGGTCCGCTGTATCACAAGGGCTGGTACCACCTCTTCTACCAGTGGAACCCGGACTCC GCGGTATGGGGCAACATCACCTGGGGCCACGCCGTCTCGCGCGACCTCCTCCACTGGCTGCACCTACCGCTGGCCATGGT GCCCGATCACCCGTACGACGCCAACGGCGTCTGGTCCGGGTCGGCGACGCGCCTGCCCGACGGCCGGATCGTCATGCTCT ACACGGGCTCCACGGCGGAGTCGTCGGCGCAGGTGCAGAACCTCGCGGAGCCGGCCGACGCGTCCGACCCGCTGCTGCGG GAGTGGGTCAAGTCGGACGCCAACCCGGTGCTGGTGCCGCCGCCGGGCATCGGGCCGACGGACTTCCGCGACCCGACGAC GGCGTGGCGGACGCCCGGCAACGACACGCCGGCGTGGCGGGTCGCCATCGGGTCCAAGGACCGGGACCACGCGGGCTTGG CGCTGGTGTACCGGACGGAGGACTTCGTGCGGTACGACCCGGCGCCGGCGCTGATGCACGCCGTGCCGGGCACGGGCATG TGGGAGTGCGTGGACTTCTACCCGGTGGCCGCGGGATCAGGCGCCGCGGCGGACAGCGGGGACGGGCTGGAGACGTCCGC GGCGCCGGGGCCCGGGGTGAAGCACGTGCTCAAGGCCAGCCTCGACGACGACAAGCACGACTACTACGCGATCGGCACCT ACGACCCGGCGACGGACACCTGGACCCCCGACAGCGCGGAGGACGACGTCGGCATCGGCCTCCGGTACGACTACGGAAAG TACTACGCGTCCAAGACCTTCTACGACCCCGTCCTTCGCCGGCGGGTGCTCTGGGGGTGGGTCGGCGAGACCGACAGCGA GCGCGCGGACATCCTCAAGGGCTGGGCATCCGTGCAGTCAATCCCCAGGACGGTCCTCCTGGACACGAAGACGGGCAGCA ACCTGCTCCAGTGGCCGGTGGTGGAGGTGGAGAACCTCCGGATGAGCGGCAAGAGCTTCGACGGCGTCGCGCTGGACCGC GGATCCGTCGTGCCCCTCGACGTCGGCAAGGCGACGCAGTTGGACATCGAGGCTGTGTTCGAGGTGGACGCGTCGGACGC GGCGGCCGTGACGGAGGCCGACGTGACGTTCAACTGCAGCACCAGCGCTGGCGCGGCGGGCCGGGGCCTGCTCGGCCCGT TCGGCCTTCTCGTGCTGGCGGACGACGACTTGTCCGAGCAGACCGCCGTGTACTTCTACCTGCTCAAGGGCACGGACGGC AGCCTCCAAACTTTCTTCTGCCAAGACGAGCTCAGGGCATCCAAGGCGAACGATCTGGTTAAGAGAGTATACGGGAGCTT GGTCCCTGTGCTAGATGGGGAGAATCTCTCGGTCAGAATACTGGTTGACCACTCCATCGTGGAGAGCTTTGCTCAAGGCG GGAGGACGTGCATCACGTCGCGAGTGTACCCCACACGAGCCATCTACGACTCCGCCCGCGTCTTCCTCTTCAACAACGCC ACACATGCTCACGTCAAAGCAAAATCCGTCAAGATCTGGCAGCTCAACTCCGCCTACATCCGGCCATATCCGGCAACGAC GACTTCTCTATGA |