
Microexon ID | Zm_10:72230415-72230423:- |
Species | Zea mays | Coordinates | 10:72230415..72230423 |
Microexon Cluster ID | MEP21 |
Size | 9 |
Phase | 1 |
Pfam Domain Motif | AP2 |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 49,9,50 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | TGGGAYAAYAGYWSYWGRARWGARRGYCARAVYARGAARGGAARRCAAGTTTAYYTRGGKGSWTATGAYRAKGARGARRMWGCWGCWMGRGCWTATGAYYTDGCWGCW |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | TGTACTTAG |
Microexon Amino Acid seq | VYLG |
Microexon-tag DNA Seq | TGGGACAACACCAGCCAGGTCGAAGGCCGCAAGCGCAAGGGCAAGCACGTGTACTTAGGCAGCTATGTCGATGAAGAGCAGGCTGCAAAGGCACATGATTTGGCTGCC |
Microexon-tag Amino Acid Seq | WDNTSQVEGRKRKGKHVYLGSYVDEEQAAKAHDLAA |
Microexon-tag spanning region | 72230285-72232021 |
Microexon-tag prediction score | 0.9079 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | Zm00001d024468_T001x |
Reference Transcript ID | Zm00001d024468_T001 |
Gene ID | Zm00001d024468 |
Gene Name | AP2-EREBP-transcription factor 163 |
Transcript ID | Zm00001d024468_T001 |
Protein ID | Zm00001d024468_P001 |
Gene ID | Zm00001d024468 |
Gene Name | AP2-EREBP-transcription factor 163 |
Pfam domain motif | AP2 |
Motif E-value | 1.8e-09 |
Motif start | 93 |
Motif end | 151 |
Protein seq | >Zm00001d024468_P001 MATVHPQSPAGPTHLPQEERHGDAPVPPAVSGEPAAAAEAGGEIAALDKQLAVVGGGEERRPAGAGAGAASAGGGGKLVA EAMRKYAAPRSSRFHGVTRLKWSGKYEAHLWDNTSQVEGRKRKGKHVYLGSYVDEEQAAKAHDLAALKYWGTGPNTKLNF NISDYEKEIEVMKTMSQDEFVAYIRRQSSCFSRETEEEAAEAYDIAAIELRGVHAVTNFDISNYCEDGLRKLEGPSEVAK LGSPSEVVKLAGQ* |
CDS seq | >Zm00001d024468_T001 ATGGCCACCGTCCACCCTCAATCCCCGGCGGGTCCCACCCATCTCCCGCAGGAGGAGCGACACGGGGACGCCCCGGTACC GCCCGCCGTCTCCGGCGAACCCGCCGCCGCAGCGGAGGCGGGCGGCGAGATCGCCGCGCTCGACAAGCAGCTCGCCGTCG TCGGCGGCGGCGAGGAGAGGAGGCCGGCCGGGGCCGGGGCCGGGGCCGCCAGCGCAGGCGGGGGAGGGAAGCTGGTGGCG GAGGCCATGCGCAAGTACGCTGCCCCGCGGTCGTCGCGCTTCCACGGCGTCACCAGGCTCAAGTGGAGCGGCAAGTACGA GGCGCACCTTTGGGACAACACCAGCCAGGTCGAAGGCCGCAAGCGCAAGGGCAAGCACGTGTACTTAGGCAGCTATGTCG ATGAAGAGCAGGCTGCAAAGGCACATGATTTGGCTGCCCTTAAATATTGGGGCACAGGGCCAAACACCAAACTGAACTTC AATATTTCTGATTATGAGAAAGAAATTGAGGTTATGAAGACCATGTCCCAAGATGAATTTGTGGCCTACATAAGGAGACA AAGCAGTTGTTTCTCAAGAGAAACTGAAGAAGAGGCAGCAGAAGCTTATGACATTGCAGCGATCGAGCTTCGGGGTGTTC ATGCAGTCACCAACTTTGACATTAGTAATTACTGTGAAGATGGTTTGAGAAAATTAGAAGGCCCATCAGAGGTGGCTAAG CTTGGAAGTCCGTCGGAGGTTGTGAAGCTCGCTGGGCAATAG |
Microexon DNA seq | TGTACTTAG |
Microexon Amino Acid seq | VYLG |
Microexon-tag DNA Seq | TGGGACAACACCAGCCAGGTCGAAGGCCGCAAGCGCAAGGGCAAGCACGTGTACTTAGGCAGCTATGTCGATGAAGAGCAGGCTGCAAAGGCACATGATTTGGCTGCC |
Microexon-tag Amino Acid seq | WDNTSQVEGRKRKGKHVYLGSYVDEEQAAKAHDLAA |
Transcript ID | Zm00001d024468_T003 |
Gene ID | Zm.6803 |
Gene Name | AP2-EREBP-transcription factor 163 |
Pfam domain motif | AP2 |
Motif E-value | 2.2e-09 |
Motif start | 93 |
Motif end | 151 |
Protein seq | >Zm00001d024468_T003 MATVHPQSPAGPTHLPQEERHGDAPVPPAVSGEPAAAAEAGGEIAALDKQLAVVGGGEERRPAGAGAGAASAGGGGKLVA EAMRKYAAPRSSRFHGVTRLKWSGKYEAHLWDNTSQVEGRKRKGKHVYLGSYVDEEQAAKAHDLAALKYWGTGPNTKLNF NISDYEKEIEVMKTMSQDEFVAYIRRQSSCFSRGTSSYRGVTRRKDGKWQARIGRIGESRDTKDIYLGTFETEEEAAEAY DIAAIELRGVHAVTNFDISNYCEDGLRKLEGPSEVAKLGSPSEVVKLAGQ* |
CDS seq | >Zm00001d024468_T003 ATGGCCACCGTCCACCCTCAATCCCCGGCGGGTCCCACCCATCTCCCGCAGGAGGAGCGACACGGGGACGCCCCGGTACC GCCCGCCGTCTCCGGCGAACCCGCCGCCGCAGCGGAGGCGGGCGGCGAGATCGCCGCGCTCGACAAGCAGCTCGCCGTCG TCGGCGGCGGCGAGGAGAGGAGGCCGGCCGGGGCCGGGGCCGGGGCCGCCAGCGCAGGCGGGGGAGGGAAGCTGGTGGCG GAGGCCATGCGCAAGTACGCTGCCCCGCGGTCGTCGCGCTTCCACGGCGTCACCAGGCTCAAGTGGAGCGGCAAGTACGA GGCGCACCTTTGGGACAACACCAGCCAGGTCGAAGGCCGCAAGCGCAAGGGCAAGCACGTGTACTTAGGCAGCTATGTCG ATGAAGAGCAGGCTGCAAAGGCACATGATTTGGCTGCCCTTAAATATTGGGGCACAGGGCCAAACACCAAACTGAACTTC AATATTTCTGATTATGAGAAAGAAATTGAGGTTATGAAGACCATGTCCCAAGATGAATTTGTGGCCTACATAAGGAGACA AAGCAGTTGTTTCTCAAGAGGTACTTCATCATACCGGGGTGTAACCAGACGGAAGGATGGTAAATGGCAAGCAAGAATTG GTAGGATCGGTGAGAGTAGAGACACCAAAGACATTTACCTTGGGACCTTTGAAACTGAAGAAGAGGCAGCAGAAGCTTAT GACATTGCAGCGATCGAGCTTCGGGGTGTTCATGCAGTCACCAACTTTGACATTAGTAATTACTGTGAAGATGGTTTGAG AAAATTAGAAGGCCCATCAGAGGTGGCTAAGCTTGGAAGTCCGTCGGAGGTTGTGAAGCTCGCTGGGCAATAG |