Microexon ID Zm_10:72230415-72230423:-
Species Zea mays
Coordinates 10:72230415..72230423
Microexon Cluster ID MEP21
Size 9
Phase 1
Pfam Domain Motif AP2
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) 49,9,50
Microexon location in the Microexon-tag 2
Microexon-tag DNA Seq TGGGAYAAYAGYWSYWGRARWGARRGYCARAVYARGAARGGAARRCAAGTTTAYYTRGGKGSWTATGAYRAKGARGARRMWGCWGCWMGRGCWTATGAYYTDGCWGCW
Logo of Microexon-tag DNA Seq NT60 Logo
Alignment of exons MSA
Microexon DNA seq TGTACTTAG
Microexon Amino Acid seq VYLG
Microexon-tag DNA Seq TGGGACAACACCAGCCAGGTCGAAGGCCGCAAGCGCAAGGGCAAGCACGTGTACTTAGGCAGCTATGTCGATGAAGAGCAGGCTGCAAAGGCACATGATTTGGCTGCC
Microexon-tag Amino Acid Seq WDNTSQVEGRKRKGKHVYLGSYVDEEQAAKAHDLAA
Microexon-tag spanning region72230285-72232021
Microexon-tag prediction score0.9079
Overlapped with the annotated transcript (%) 100
New Transcript ID Zm00001d024468_T001x
Reference Transcript ID Zm00001d024468_T001
Gene ID Zm00001d024468
Gene Name AP2-EREBP-transcription factor 163
Transcript ID Zm00001d024468_T001
Protein ID Zm00001d024468_P001
Gene ID Zm00001d024468
Gene Name AP2-EREBP-transcription factor 163
Pfam domain motif AP2
Motif E-value 1.8e-09
Motif start 93
Motif end 151
Protein seq >Zm00001d024468_P001
MATVHPQSPAGPTHLPQEERHGDAPVPPAVSGEPAAAAEAGGEIAALDKQLAVVGGGEERRPAGAGAGAASAGGGGKLVA
EAMRKYAAPRSSRFHGVTRLKWSGKYEAHLWDNTSQVEGRKRKGKHVYLGSYVDEEQAAKAHDLAALKYWGTGPNTKLNF
NISDYEKEIEVMKTMSQDEFVAYIRRQSSCFSRETEEEAAEAYDIAAIELRGVHAVTNFDISNYCEDGLRKLEGPSEVAK
LGSPSEVVKLAGQ*
CDS seq >Zm00001d024468_T001
ATGGCCACCGTCCACCCTCAATCCCCGGCGGGTCCCACCCATCTCCCGCAGGAGGAGCGACACGGGGACGCCCCGGTACC
GCCCGCCGTCTCCGGCGAACCCGCCGCCGCAGCGGAGGCGGGCGGCGAGATCGCCGCGCTCGACAAGCAGCTCGCCGTCG
TCGGCGGCGGCGAGGAGAGGAGGCCGGCCGGGGCCGGGGCCGGGGCCGCCAGCGCAGGCGGGGGAGGGAAGCTGGTGGCG
GAGGCCATGCGCAAGTACGCTGCCCCGCGGTCGTCGCGCTTCCACGGCGTCACCAGGCTCAAGTGGAGCGGCAAGTACGA
GGCGCACCTTTGGGACAACACCAGCCAGGTCGAAGGCCGCAAGCGCAAGGGCAAGCACGTGTACTTAGGCAGCTATGTCG
ATGAAGAGCAGGCTGCAAAGGCACATGATTTGGCTGCCCTTAAATATTGGGGCACAGGGCCAAACACCAAACTGAACTTC
AATATTTCTGATTATGAGAAAGAAATTGAGGTTATGAAGACCATGTCCCAAGATGAATTTGTGGCCTACATAAGGAGACA
AAGCAGTTGTTTCTCAAGAGAAACTGAAGAAGAGGCAGCAGAAGCTTATGACATTGCAGCGATCGAGCTTCGGGGTGTTC
ATGCAGTCACCAACTTTGACATTAGTAATTACTGTGAAGATGGTTTGAGAAAATTAGAAGGCCCATCAGAGGTGGCTAAG
CTTGGAAGTCCGTCGGAGGTTGTGAAGCTCGCTGGGCAATAG
Microexon DNA seq TGTACTTAG
Microexon Amino Acid seq VYLG
Microexon-tag DNA Seq TGGGACAACACCAGCCAGGTCGAAGGCCGCAAGCGCAAGGGCAAGCACGTGTACTTAGGCAGCTATGTCGATGAAGAGCAGGCTGCAAAGGCACATGATTTGGCTGCC
Microexon-tag Amino Acid seq WDNTSQVEGRKRKGKHVYLGSYVDEEQAAKAHDLAA
Transcript ID Zm00001d024468_T003
Gene ID Zm.6803
Gene Name AP2-EREBP-transcription factor 163
Pfam domain motif AP2
Motif E-value 2.2e-09
Motif start 93
Motif end 151
Protein seq >Zm00001d024468_T003
MATVHPQSPAGPTHLPQEERHGDAPVPPAVSGEPAAAAEAGGEIAALDKQLAVVGGGEERRPAGAGAGAASAGGGGKLVA
EAMRKYAAPRSSRFHGVTRLKWSGKYEAHLWDNTSQVEGRKRKGKHVYLGSYVDEEQAAKAHDLAALKYWGTGPNTKLNF
NISDYEKEIEVMKTMSQDEFVAYIRRQSSCFSRGTSSYRGVTRRKDGKWQARIGRIGESRDTKDIYLGTFETEEEAAEAY
DIAAIELRGVHAVTNFDISNYCEDGLRKLEGPSEVAKLGSPSEVVKLAGQ*
CDS seq >Zm00001d024468_T003
ATGGCCACCGTCCACCCTCAATCCCCGGCGGGTCCCACCCATCTCCCGCAGGAGGAGCGACACGGGGACGCCCCGGTACC
GCCCGCCGTCTCCGGCGAACCCGCCGCCGCAGCGGAGGCGGGCGGCGAGATCGCCGCGCTCGACAAGCAGCTCGCCGTCG
TCGGCGGCGGCGAGGAGAGGAGGCCGGCCGGGGCCGGGGCCGGGGCCGCCAGCGCAGGCGGGGGAGGGAAGCTGGTGGCG
GAGGCCATGCGCAAGTACGCTGCCCCGCGGTCGTCGCGCTTCCACGGCGTCACCAGGCTCAAGTGGAGCGGCAAGTACGA
GGCGCACCTTTGGGACAACACCAGCCAGGTCGAAGGCCGCAAGCGCAAGGGCAAGCACGTGTACTTAGGCAGCTATGTCG
ATGAAGAGCAGGCTGCAAAGGCACATGATTTGGCTGCCCTTAAATATTGGGGCACAGGGCCAAACACCAAACTGAACTTC
AATATTTCTGATTATGAGAAAGAAATTGAGGTTATGAAGACCATGTCCCAAGATGAATTTGTGGCCTACATAAGGAGACA
AAGCAGTTGTTTCTCAAGAGGTACTTCATCATACCGGGGTGTAACCAGACGGAAGGATGGTAAATGGCAAGCAAGAATTG
GTAGGATCGGTGAGAGTAGAGACACCAAAGACATTTACCTTGGGACCTTTGAAACTGAAGAAGAGGCAGCAGAAGCTTAT
GACATTGCAGCGATCGAGCTTCGGGGTGTTCATGCAGTCACCAACTTTGACATTAGTAATTACTGTGAAGATGGTTTGAG
AAAATTAGAAGGCCCATCAGAGGTGGCTAAGCTTGGAAGTCCGTCGGAGGTTGTGAAGCTCGCTGGGCAATAG