
Microexon ID | Sb_4:58504364-58504372:+ |
Species | Sorghum Bicolor | Coordinates | 4:58504364..58504372 |
Microexon Cluster ID | MEP21 |
Size | 9 |
Phase | 1 |
Pfam Domain Motif | AP2 |
Structure of Microexon-tag (flanking exon, microexon, flanking exon sizes) | 49,9,50 |
Microexon location in the Microexon-tag | 2 |
Microexon-tag DNA Seq | TGGGAYAAYAGYWSYWGRARWGARRGYCARAVYARGAARGGAARRCAAGTTTAYYTRGGKGSWTATGAYRAKGARGARRMWGCWGCWMGRGCWTATGAYYTDGCWGCW |
Logo of Microexon-tag DNA Seq | ![]() |
Alignment of exons | ![]() |
Microexon DNA seq | TTTATCTAG |
Microexon Amino Acid seq | VYLG |
Microexon-tag DNA Seq | TGGGACAGTTCTTGCAGAGTAGAGGGACGTAGAAGGAAAGGGAAACAAGTTTATCTAGGAAGTTATGATACTGAGGAAAAAGCTGCCAGGGCCTATGATGTTGCTGCT |
Microexon-tag Amino Acid Seq | WDSSCRVEGRRRKGKQVYLGSYDTEEKAARAYDVAA |
Microexon-tag spanning region | 58502835-58504507 |
Microexon-tag prediction score | 0.9388 |
Overlapped with the annotated transcript (%) | 100 |
New Transcript ID | KXG30761x |
Reference Transcript ID | KXG30761 |
Gene ID | SORBI_3004G237100 |
Gene Name | NA |
Transcript ID | KXG30761 |
Protein ID | |
Gene ID | SORBI_3004G237100 |
Gene Name | |
Pfam domain motif | AP2 |
Motif E-value | 1.00E-11 |
Motif start | 180 |
Motif end | 237 |
Protein seq | >KXG30761 MEESDVGVNPGKQMEEDKAAGVSGDEGKIERSHSINLNRAPTVAVEARSTQGNVETHGAVVSGTKDAGTGKAEQSSGDGQ EKLPKCEQVDYESEIEGCVDDENPVKKAALVTLVGNEYCGGDDDERVQVLTIVKKDEPADDIGDCINPGTVAGYSEVKGA VGASAATSAVRPAGSRSSSFHGVTRHRWSGKYEAHLWDSSCRVEGRRRKGKQVYLGSYDTEEKAARAYDVAAIKYWGGNT RLNFPIEQYGKELEDIRDLSREECVTYLRRRSSCFSRGASIYRGVTRRQKDGRWQARIGLVAGTRDIYLGTFKTEEEAAE AYDIAAIEIRGKNAVTNFDRSNYVDKGMHCIEGEGLRLLASKPEE* |
CDS seq | >KXG30761 ATGGAGGAATCGGACGTAGGAGTTAATCCTGGGAAGCAAATGGAAGAGGATAAGGCTGCGGGAGTATCGGGAGATGAGGG TAAGATTGAGAGGAGTCACTCTATCAATCTGAATAGGGCGCCCACAGTTGCTGTGGAGGCGAGGAGCACTCAGGGGAATG TTGAGACGCACGGCGCAGTGGTGTCGGGAACTAAGGATGCAGGCACCGGAAAGGCAGAGCAATCCAGTGGTGATGGTCAG GAGAAGTTACCCAAGTGTGAGCAAGTCGACTACGAAAGTGAGATTGAAGGCTGTGTAGATGATGAGAACCCTGTCAAGAA GGCTGCTTTAGTTACTTTGGTTGGAAATGAATATTGTGGTGGTGATGATGATGAGAGAGTTCAAGTGCTCACCATTGTCA AGAAGGATGAACCTGCAGATGACATTGGCGACTGTATTAATCCTGGGACAGTTGCAGGGTACAGTGAAGTGAAGGGTGCT GTAGGTGCTTCTGCCGCCACTTCTGCAGTGCGACCTGCTGGCTCCCGATCATCCAGTTTCCACGGTGTGACCAGGCATAG ATGGAGTGGGAAATATGAAGCTCATTTGTGGGACAGTTCTTGCAGAGTAGAGGGACGTAGAAGGAAAGGGAAACAAGTTT ATCTAGGAAGTTATGATACTGAGGAAAAAGCTGCCAGGGCCTATGATGTTGCTGCTATTAAATACTGGGGCGGAAATACC AGACTAAACTTTCCGATTGAACAATATGGAAAGGAATTGGAGGACATAAGGGATTTGTCTCGAGAGGAATGTGTAACATA CTTGAGAAGGAGGAGCAGCTGCTTTTCAAGAGGAGCTTCTATTTACAGAGGAGTGACAAGAAGGCAGAAAGATGGGAGAT GGCAAGCACGCATAGGACTGGTTGCTGGAACTAGAGACATTTACCTGGGAACATTCAAAACGGAGGAAGAAGCTGCAGAG GCTTATGATATTGCTGCAATTGAGATACGTGGCAAAAATGCTGTGACTAATTTTGACCGAAGCAACTATGTCGACAAGGG TATGCACTGTATAGAAGGAGAAGGCTTGAGGCTGCTCGCATCCAAGCCAGAAGAATGA |
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